ClCG07G016260 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G016260
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr07: 32644821 .. 32645043 (+)
RNA-Seq ExpressionClCG07G016260
SyntenyClCG07G016260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTACAATGCTACTTCCACATCGTTGACAGTCAACGCCTACGTGGCAACCCTTTCTGTTAAAGTCCAAAAATACCCTGCACGGTTTCTCCGCTCCCACCACGTGTCTTTCTCTTATTGGACCACTCTCTCCGACCTACCATTTTAAAACCCCTCCCAACCTTCCTCCTCATTTCCTGCTAATTTCCCAATCTCTCTCTCTCTGGGCTCGATTTTCTCGA

mRNA sequence

ATGAAGTACAATGCTACTTCCACATCGTTGACAGTCAACGCCTACGTGGCAACCCTTTCTTCCAAAAATACCCTGCACGGTTTCTCCGCTCCCACCACGTGTCTTTCTCTTATTGGACCACTCTCTCCGACCTACCATTTTAAAACCCCTCCCAACCTTCCTCCTCATTTCCTGCTAATTTCCCAATCTCTCTCTCTCTGGGCTCGATTTTCTCGA

Coding sequence (CDS)

ATGAAGTACAATGCTACTTCCACATCGTTGACAGTCAACGCCTACGTGGCAACCCTTTCTTCCAAAAATACCCTGCACGGTTTCTCCGCTCCCACCACGTGTCTTTCTCTTATTGGACCACTCTCTCCGACCTACCATTTTAAAACCCCTCCCAACCTTCCTCCTCATTTCCTGCTAATTTCCCAATCTCTCTCTCTCTGGGCTCGATTTTCTCGA

Protein sequence

MKYNATSTSLTVNAYVATLSSKNTLHGFSAPTTCLSLIGPLSPTYHFKTPPNLPPHFLLISQSLSLWARFSR
Homology
BLAST of ClCG07G016260 vs. NCBI nr
Match: KGN53639.1 (hypothetical protein Csa_014541 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 40/69 (57.97%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 1  MKYNATSTSLTVNAYVATLSSKNTLHG----FSAPTTCLSLIGPLSPTYHFKTPPNLPPH 60
          MKYNATSTSLTVNAYV TLS K   +        P     L   L  T   K  PNLPPH
Sbjct: 1  MKYNATSTSLTVNAYVTTLSVKVQKYPARFLLYLPRVFFLLDHSLQSTI-LKPLPNLPPH 60

Query: 61 FLLISQSLS 66
          FLLISQSLS
Sbjct: 61 FLLISQSLS 68

BLAST of ClCG07G016260 vs. ExPASy TrEMBL
Match: A0A0A0KXR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G094510 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 40/69 (57.97%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 1  MKYNATSTSLTVNAYVATLSSKNTLHG----FSAPTTCLSLIGPLSPTYHFKTPPNLPPH 60
          MKYNATSTSLTVNAYV TLS K   +        P     L   L  T   K  PNLPPH
Sbjct: 1  MKYNATSTSLTVNAYVTTLSVKVQKYPARFLLYLPRVFFLLDHSLQSTI-LKPLPNLPPH 60

Query: 61 FLLISQSLS 66
          FLLISQSLS
Sbjct: 61 FLLISQSLS 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53639.11.3e-0457.97hypothetical protein Csa_014541 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXR66.4e-0557.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G094510 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G016260.1ClCG07G016260.1mRNA