ClCG07G016260 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G016260
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr07: 32644821 .. 32645043 (+)
RNA-Seq Expression	ClCG07G016260
Synteny	ClCG07G016260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAATGCTACTTCCACATCGTTGACAGTCAACGCCTACGTGGCAACCCTTTCTGTTAAAGTCCAAAAATACCCTGCACGGTTTCTCCGCTCCCACCACGTGTCTTTCTCTTATTGGACCACTCTCTCCGACCTACCATTTTAAAACCCCTCCCAACCTTCCTCCTCATTTCCTGCTAATTTCCCAATCTCTCTCTCTCTGGGCTCGATTTTCTCGA

mRNA sequence

ATGAAGTACAATGCTACTTCCACATCGTTGACAGTCAACGCCTACGTGGCAACCCTTTCTTCCAAAAATACCCTGCACGGTTTCTCCGCTCCCACCACGTGTCTTTCTCTTATTGGACCACTCTCTCCGACCTACCATTTTAAAACCCCTCCCAACCTTCCTCCTCATTTCCTGCTAATTTCCCAATCTCTCTCTCTCTGGGCTCGATTTTCTCGA

Coding sequence (CDS)

ATGAAGTACAATGCTACTTCCACATCGTTGACAGTCAACGCCTACGTGGCAACCCTTTCTTCCAAAAATACCCTGCACGGTTTCTCCGCTCCCACCACGTGTCTTTCTCTTATTGGACCACTCTCTCCGACCTACCATTTTAAAACCCCTCCCAACCTTCCTCCTCATTTCCTGCTAATTTCCCAATCTCTCTCTCTCTGGGCTCGATTTTCTCGA

Protein sequence

MKYNATSTSLTVNAYVATLSSKNTLHGFSAPTTCLSLIGPLSPTYHFKTPPNLPPHFLLISQSLSLWARFSR

Homology

[Close]

BLAST of ClCG07G016260 vs. NCBI nr
Match: KGN53639.1 (hypothetical protein Csa_014541 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 40/69 (57.97%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 1  MKYNATSTSLTVNAYVATLSSKNTLHG----FSAPTTCLSLIGPLSPTYHFKTPPNLPPH 60
          MKYNATSTSLTVNAYV TLS K   +        P     L   L  T   K  PNLPPH
Sbjct: 1  MKYNATSTSLTVNAYVTTLSVKVQKYPARFLLYLPRVFFLLDHSLQSTI-LKPLPNLPPH 60

Query: 61 FLLISQSLS 66
          FLLISQSLS
Sbjct: 61 FLLISQSLS 68

[Close]

BLAST of ClCG07G016260 vs. ExPASy TrEMBL
Match: A0A0A0KXR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G094510 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.4e-05
Identity = 40/69 (57.97%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 1  MKYNATSTSLTVNAYVATLSSKNTLHG----FSAPTTCLSLIGPLSPTYHFKTPPNLPPH 60
          MKYNATSTSLTVNAYV TLS K   +        P     L   L  T   K  PNLPPH
Sbjct: 1  MKYNATSTSLTVNAYVTTLSVKVQKYPARFLLYLPRVFFLLDHSLQSTI-LKPLPNLPPH 60

Query: 61 FLLISQSLS 66
          FLLISQSLS
Sbjct: 61 FLLISQSLS 68

The following BLAST results are available for this feature:

BLAST of ClCG07G016260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53639.1	1.3e-04	57.97	hypothetical protein Csa_014541 [Cucumis sativus]	[more]

BLAST of ClCG07G016260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G016260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXR6	6.4e-05	57.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G094510 PE=4 SV=1	[more]

BLAST of ClCG07G016260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G016260.1	ClCG07G016260.1	mRNA