ClCG07G013920 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATATTTACATTGCTTCTGCAGGTATGGCAGAGCCTAGAAAAAAAGGGGGGTGGCTGTTATGCTGGGGCCTGCCCTTGTAGGGATCACTGTATTGGTTCATTTACTAGACTGATTTGGCAGTGAGTGAAAGAGAGAGGCTGGATCTTATTGGAAGGCGACAAAATCAAAAAAAAAAAAAAAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGGGGATTTCAACAGCTCATTTCTTGCACTCTTGCAATTGCAAGGTTCTCTTCTCTATGTCCATGGTGAGTTGTCAAATGATATGAGGTGGAGTGGAGAGACTTTGCTTCGCTTTGCTTCAGAACTCTTTGATAAGAAAACTGGAATCGATCACTTGTTTGTAACGCAAAATCTCTTTGCCAGTCCTAAGCTAGACCCTGGAAGAGTAAGAAACCAAACAAAACAAAACAATATATATATGTATAGAGAGAGAGAGAGAGAGAGGCTCTGACTTCGGGTACGGGGAAACGTGAACCTGCTTGTTAGTCTTGAGTTTCCCCCACCTTCTTAATTCTTATAGCCCAAATCATTTTCCATTTTATCCACTCACCATCTCATTCCCACCATAATCATCATTATCATTTTGGCTTTTGAAGACATGAAAGCAGCATACTGGTTTTTTGTATTGATTCTGCAATTAGCCTGTTGGGTTTCTGCTGCAGCCAGAACTTTTGCTCCAAATCATGCTCTCCTTCCTCATAAACAACAAGGTTTGTTTGTTACCAATATACTTAGATTTTATTTCCTCTCTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCTATCTCATTCCAATTATTACATCTACTTATCCATATGTCTGCCTTTTTAACTCAACTTGCTTGTTGTTTTGTTGCTACCAGGTCTCATCTCAAGCTCTTTGGATTCAAAGGAGGTCAGCCCCCCTCCCCCCTTTTATATCTTTGTATGTGCTCTGTTTGGTGAAATAATTCATTTTTGCTCTCTGTAAAGGCTGTTAAAGGTGTAAATGAAGAAGCATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCGCCGAGCTGTGAACACAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACCACCAACAGGCGCAGCCATGTGGGGGTCCAATACACTAACTATGAGCCTGAGGGATGGAAGTGCAAGTGTGGCCCTTCTTTTTACAGCCCTTGA ATGAATATTTACATTGCTTCTGCAGGTTCTCTTCTCTATGTCCATGGTGAGTTGTCAAATGATATGAGGTGGAGTGGAGAGACTTTGCTTCGCTTTGCTTCAGAACTCTTTGATAAGAAAACTGGAATCGATCACTTGTTTGTAACGCAAAATCTCTTTGCCAGTCCTAAGCTAGACCCTGGAAGACCCAAATCATTTTCCATTTTATCCACTCACCATCTCATTCCCACCATAATCATCATTATCATTTTGGCTTTTGAAGACATGAAAGCAGCATACTGGTTTTTTGTATTGATTCTGCAATTAGCCTGTTGGGTTTCTGCTGCAGCCAGAACTTTTGCTCCAAATCATGCTCTCCTTCCTCATAAACAACAAGGTCTCATCTCAAGCTCTTTGGATTCAAAGGAGGCTGTTAAAGGTGTAAATGAAGAAGCATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCGCCGAGCTGTGAACACAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACCACCAACAGGCGCAGCCATGTGGGGGTCCAATACACTAACTATGAGCCTGAGGGATGGAAGTGCAAGTGTGGCCCTTCTTTTTACAGCCCTTGA ATGAATATTTACATTGCTTCTGCAGGTTCTCTTCTCTATGTCCATGGTGAGTTGTCAAATGATATGAGGTGGAGTGGAGAGACTTTGCTTCGCTTTGCTTCAGAACTCTTTGATAAGAAAACTGGAATCGATCACTTGTTTGTAACGCAAAATCTCTTTGCCAGTCCTAAGCTAGACCCTGGAAGACCCAAATCATTTTCCATTTTATCCACTCACCATCTCATTCCCACCATAATCATCATTATCATTTTGGCTTTTGAAGACATGAAAGCAGCATACTGGTTTTTTGTATTGATTCTGCAATTAGCCTGTTGGGTTTCTGCTGCAGCCAGAACTTTTGCTCCAAATCATGCTCTCCTTCCTCATAAACAACAAGGTCTCATCTCAAGCTCTTTGGATTCAAAGGAGGCTGTTAAAGGTGTAAATGAAGAAGCATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCGCCGAGCTGTGAACACAAGTGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACCACCAACAGGCGCAGCCATGTGGGGGTCCAATACACTAACTATGAGCCTGAGGGATGGAAGTGCAAGTGTGGCCCTTCTTTTTACAGCCCTTGA MNIYIASAGSLLYVHGELSNDMRWSGETLLRFASELFDKKTGIDHLFVTQNLFASPKLDPGRPKSFSILSTHHLIPTIIIIIILAFEDMKAAYWFFVLILQLACWVSAAARTFAPNHALLPHKQQGLISSSLDSKEAVKGVNEEAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTTNRRSHVGVQYTNYEPEGWKCKCGPSFYSP Homology
BLAST of ClCG07G013920 vs. NCBI nr
Match: XP_038904354.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 isoform X1 [Benincasa hispida]) HSP 1 Score: 240.7 bits (613), Expect = 1.1e-59 Identity = 112/120 (93.33%), Postives = 113/120 (94.17%), Query Frame = 0
BLAST of ClCG07G013920 vs. NCBI nr
Match: XP_004146810.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652342.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >KAE8651286.1 hypothetical protein Csa_001818 [Cucumis sativus]) HSP 1 Score: 218.4 bits (555), Expect = 5.8e-53 Identity = 103/120 (85.83%), Postives = 105/120 (87.50%), Query Frame = 0
BLAST of ClCG07G013920 vs. NCBI nr
Match: XP_008447616.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447617.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447618.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >KAA0036717.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa] >TYK03693.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa]) HSP 1 Score: 214.2 bits (544), Expect = 1.1e-51 Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0
BLAST of ClCG07G013920 vs. NCBI nr
Match: XP_022152671.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Momordica charantia] >XP_022152672.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Momordica charantia]) HSP 1 Score: 185.3 bits (469), Expect = 5.5e-43 Identity = 91/123 (73.98%), Postives = 99/123 (80.49%), Query Frame = 0
BLAST of ClCG07G013920 vs. NCBI nr
Match: XP_023526549.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 179.5 bits (454), Expect = 3.0e-41 Identity = 87/114 (76.32%), Postives = 93/114 (81.58%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 7.0e-17 Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.7e-10 Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08 Identity = 40/137 (29.20%), Postives = 57/137 (41.61%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06 Identity = 23/54 (42.59%), Postives = 28/54 (51.85%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 1.6e-05 Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy TrEMBL
Match: A0A1S3BIS6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030 PE=3 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 5.3e-52 Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy TrEMBL
Match: A0A5D3BVF6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00550 PE=3 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 5.3e-52 Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy TrEMBL
Match: A0A6J1DIF6 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111020335 PE=3 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 2.6e-43 Identity = 91/123 (73.98%), Postives = 99/123 (80.49%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy TrEMBL
Match: A0A6J1IUG9 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480029 PE=3 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 2.5e-41 Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0
BLAST of ClCG07G013920 vs. ExPASy TrEMBL
Match: A0A6J1GTM4 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111457464 PE=3 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40 Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = 0
BLAST of ClCG07G013920 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 89.0 bits (219), Expect = 5.0e-18 Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 0
BLAST of ClCG07G013920 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11 Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 0
BLAST of ClCG07G013920 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 60.5 bits (145), Expect = 1.9e-09 Identity = 40/137 (29.20%), Postives = 57/137 (41.61%), Query Frame = 0
BLAST of ClCG07G013920 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 59.3 bits (142), Expect = 4.2e-09 Identity = 28/66 (42.42%), Postives = 33/66 (50.00%), Query Frame = 0
BLAST of ClCG07G013920 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 53.5 bits (127), Expect = 2.3e-07 Identity = 23/54 (42.59%), Postives = 28/54 (51.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|