ClCG07G013410 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G013410
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein trichome birefringence-like 39
Location	CG_Chr07: 29865961 .. 29866337 (+)
RNA-Seq Expression	ClCG07G013410
Synteny	ClCG07G013410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGCTCATCTTCAACACTGCGCATTGGATCTCTTATACTCTCTCCTCCCTCTCCATTGCTAAACGCTTGGAAGGAAATGGACATGCTCATCTTCAACACTGCGCATTGGTGGACTCACATTGGAACTTCTCAGATGTAAGAAATTTCTTCAACTGCTAATCTCTCTGTTTTTCCGTTCTTCTACAATTCTTATGGTTTCAACAAAACAAATCAGGTGGGATTACATTCAAGACGAGAACAGAGTAATGAAGGACATGAATGGTTACGTGGCCTATTACAAAGGCCTCATCAATTGGGCCAGATGGGTTAATCTCAATGTCGATCCTTTCAAAACCATTGTCTTCTTCCTCAGAATCTCCCCCACACATTGC

mRNA sequence

ATGGACATGCTCATCTTCAACACTGCGCATTGGATCTCTTATACTCTCTCCTCCCTCTCCATTGCTAAACGCTTGGAAGGAAATGGACATGCTCATCTTCAACACTGCGCATTGGTGGACTCACATTGGAACTTCTCAGATAAATTTCTTCAACTGCTAATCTCTCTGTTTTTCCGTTCTTCTACAATTCTTATGGTTTCAACAAAACAAATCAGGTGGGATTACATTCAAGACGAGAACAGAGTAATGAAGGACATGAATGGTTACGTGGCCTATTACAAAGGCCTCATCAATTGGGCCAGATGGGTTAATCTCAATGTCGATCCTTTCAAAACCATTGTCTTCTTCCTCAGAATCTCCCCCACACATTGC

Coding sequence (CDS)

ATGGACATGCTCATCTTCAACACTGCGCATTGGATCTCTTATACTCTCTCCTCCCTCTCCATTGCTAAACGCTTGGAAGGAAATGGACATGCTCATCTTCAACACTGCGCATTGGTGGACTCACATTGGAACTTCTCAGATAAATTTCTTCAACTGCTAATCTCTCTGTTTTTCCGTTCTTCTACAATTCTTATGGTTTCAACAAAACAAATCAGGTGGGATTACATTCAAGACGAGAACAGAGTAATGAAGGACATGAATGGTTACGTGGCCTATTACAAAGGCCTCATCAATTGGGCCAGATGGGTTAATCTCAATGTCGATCCTTTCAAAACCATTGTCTTCTTCCTCAGAATCTCCCCCACACATTGC

Protein sequence

MDMLIFNTAHWISYTLSSLSIAKRLEGNGHAHLQHCALVDSHWNFSDKFLQLLISLFFRSSTILMVSTKQIRWDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTHC

Homology

[Close]

BLAST of ClCG07G013410 vs. NCBI nr
Match: XP_038900997.1 (protein trichome birefringence-like 39 [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-17
Identity = 44/51 (86.27%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRVMKDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 216 WDYIQDGNRVMKDMNRYVAYYKGLTTWARWVNLNVDPSKTTVFFLGISPTH 266

[Close]

BLAST of ClCG07G013410 vs. NCBI nr
Match: XP_022149744.1 (protein trichome birefringence-like 39 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-17
Identity = 44/51 (86.27%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRVMKDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 212 WDYIQDGNRVMKDMNRYVAYYKGLTTWARWVNLNVDPSKTKVFFLGISPTH 262

[Close]

BLAST of ClCG07G013410 vs. NCBI nr
Match: XP_004149371.1 (protein trichome birefringence-like 39 [Cucumis sativus] >KGN47239.1 hypothetical protein Csa_016982 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 6.9e-17
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRV+KDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 223 WDYIQDGNRVLKDMNRYVAYYKGLTTWARWVNLNVDPSKTTVFFLGISPTH 273

[Close]

BLAST of ClCG07G013410 vs. NCBI nr
Match: XP_023512589.1 (protein trichome birefringence-like 39 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRV+KDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 210 WDYIQDGNRVVKDMNRYVAYYKGLTTWARWVNLNVDPSKTKVFFLGISPTH 260

[Close]

BLAST of ClCG07G013410 vs. NCBI nr
Match: XP_022986000.1 (protein trichome birefringence-like 39 [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRV+KDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 210 WDYIQDGNRVVKDMNRYVAYYKGLTTWARWVNLNVDPTKTKVFFLGISPTH 260

[Close]

BLAST of ClCG07G013410 vs. ExPASy Swiss-Prot
Match: Q9SIN2 (Protein trichome birefringence-like 39 OS=Arabidopsis thaliana OX=3702 GN=TBL39 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-14
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDY++D NR+ KDMN  VA+YKG+  WARWVN  VDP KT VFF  +SPTH
Sbjct: 218 WDYMEDGNRLYKDMNRLVAFYKGMTTWARWVNAYVDPSKTKVFFNGVSPTH 268

[Close]

BLAST of ClCG07G013410 vs. ExPASy Swiss-Prot
Match: Q67XC4 (Protein trichome birefringence-like 40 OS=Arabidopsis thaliana OX=3702 GN=TBL40 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-12
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDY+++ N++ KDMN  VAYYKGL  WARW+N N+ P +T VFF  +SP H
Sbjct: 216 WDYMREGNQLYKDMNRLVAYYKGLNTWARWINNNIVPSRTQVFFQGVSPVH 266

[Close]

BLAST of ClCG07G013410 vs. ExPASy Swiss-Prot
Match: Q8VY22 (Protein trichome birefringence-like 38 OS=Arabidopsis thaliana OX=3702 GN=TBL38 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.0e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYI+D + +++DMN   A+YKGL  WARWV+ NVD  KT VFF  ISPTH
Sbjct: 233 WDYIRDGSSLVRDMNRLDAFYKGLSTWARWVDQNVDTAKTRVFFQGISPTH 283

[Close]

BLAST of ClCG07G013410 vs. ExPASy Swiss-Prot
Match: Q6DR10 (Protein trichome birefringence-like 43 OS=Arabidopsis thaliana OX=3702 GN=TBL43 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-09
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WD I   N  +KDM+  VAY K ++ WA+W++ N+DP KT VFF  ISP H
Sbjct: 216 WDAIMSGNVTVKDMDRLVAYEKAMMTWAKWIDQNIDPSKTKVFFQGISPDH 266

[Close]

BLAST of ClCG07G013410 vs. ExPASy Swiss-Prot
Match: Q940H3 (Protein trichome birefringence-like 36 OS=Arabidopsis thaliana OX=3702 GN=TBL36 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-09
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 56  LFFRSSTILMVSTKQIRWDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVF 115
           L F S+     S +   WDY  D N++ K M+  VAY +GL  WA+WV +N+DP KT V 
Sbjct: 206 LVFDSAHWWTHSQRWSSWDYYMDGNKIFKAMDPMVAYERGLTTWAKWVEINLDPSKTKVI 265

Query: 116 FLRISP 122
           F  +SP
Sbjct: 266 FRTVSP 271

[Close]

BLAST of ClCG07G013410 vs. ExPASy TrEMBL
Match: A0A6J1D7Y2 (protein trichome birefringence-like 39 OS=Momordica charantia OX=3673 GN=LOC111018100 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 44/51 (86.27%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRVMKDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 212 WDYIQDGNRVMKDMNRYVAYYKGLTTWARWVNLNVDPSKTKVFFLGISPTH 262

[Close]

BLAST of ClCG07G013410 vs. ExPASy TrEMBL
Match: A0A0A0KEH7 (PMR5N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G227020 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRV+KDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 223 WDYIQDGNRVLKDMNRYVAYYKGLTTWARWVNLNVDPSKTTVFFLGISPTH 273

[Close]

BLAST of ClCG07G013410 vs. ExPASy TrEMBL
Match: A0A6J1JCU6 (protein trichome birefringence-like 39 OS=Cucurbita maxima OX=3661 GN=LOC111483865 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRV+KDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 210 WDYIQDGNRVVKDMNRYVAYYKGLTTWARWVNLNVDPTKTKVFFLGISPTH 260

[Close]

BLAST of ClCG07G013410 vs. ExPASy TrEMBL
Match: A0A1S3CTT0 (protein trichome birefringence-like 39 OS=Cucumis melo OX=3656 GN=LOC103504406 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.7e-17
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD NRV+KDMN YVAYYKGL  WARWVNLNVDP +T VFFL ISPTH
Sbjct: 44  WDYIQDGNRVVKDMNRYVAYYKGLTTWARWVNLNVDPSRTTVFFLGISPTH 94

[Close]

BLAST of ClCG07G013410 vs. ExPASy TrEMBL
Match: A0A6J1FXP7 (protein trichome birefringence-like 39 OS=Cucurbita moschata OX=3662 GN=LOC111448647 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYIQD N+V+KDMN YVAYYKGL  WARWVNLNVDP KT VFFL ISPTH
Sbjct: 210 WDYIQDGNKVVKDMNRYVAYYKGLTTWARWVNLNVDPSKTKVFFLGISPTH 260

[Close]

BLAST of ClCG07G013410 vs. TAIR 10
Match: AT2G42570.1 (TRICHOME BIREFRINGENCE-LIKE 39 )

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-15
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDY++D NR+ KDMN  VA+YKG+  WARWVN  VDP KT VFF  +SPTH
Sbjct: 218 WDYMEDGNRLYKDMNRLVAFYKGMTTWARWVNAYVDPSKTKVFFNGVSPTH 268

[Close]

BLAST of ClCG07G013410 vs. TAIR 10
Match: AT2G31110.2 (Plant protein of unknown function (DUF828) )

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-13
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDY+++ N++ KDMN  VAYYKGL  WARW+N N+ P +T VFF  +SP H
Sbjct: 216 WDYMREGNQLYKDMNRLVAYYKGLNTWARWINNNIVPSRTQVFFQGVSPVH 266

[Close]

BLAST of ClCG07G013410 vs. TAIR 10
Match: AT2G31110.1 (Plant protein of unknown function (DUF828) )

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-13
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDY+++ N++ KDMN  VAYYKGL  WARW+N N+ P +T VFF  +SP H
Sbjct: 68  WDYMREGNQLYKDMNRLVAYYKGLNTWARWINNNIVPSRTQVFFQGVSPVH 118

[Close]

BLAST of ClCG07G013410 vs. TAIR 10
Match: AT1G29050.1 (TRICHOME BIREFRINGENCE-LIKE 38 )

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-13
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WDYI+D + +++DMN   A+YKGL  WARWV+ NVD  KT VFF  ISPTH
Sbjct: 233 WDYIRDGSSLVRDMNRLDAFYKGLSTWARWVDQNVDTAKTRVFFQGISPTH 283

[Close]

BLAST of ClCG07G013410 vs. TAIR 10
Match: AT2G30900.1 (TRICHOME BIREFRINGENCE-LIKE 43 )

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 73  WDYIQDENRVMKDMNGYVAYYKGLINWARWVNLNVDPFKTIVFFLRISPTH 124
           WD I   N  +KDM+  VAY K ++ WA+W++ N+DP KT VFF  ISP H
Sbjct: 216 WDAIMSGNVTVKDMDRLVAYEKAMMTWAKWIDQNIDPSKTKVFFQGISPDH 266

The following BLAST results are available for this feature:

BLAST of ClCG07G013410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900997.1	3.1e-17	86.27	protein trichome birefringence-like 39 [Benincasa hispida]	[more]
XP_022149744.1	5.3e-17	86.27	protein trichome birefringence-like 39 [Momordica charantia]	[more]
XP_004149371.1	6.9e-17	84.31	protein trichome birefringence-like 39 [Cucumis sativus] >KGN47239.1 hypothetica...	[more]
XP_023512589.1	1.5e-16	84.31	protein trichome birefringence-like 39 [Cucurbita pepo subsp. pepo]	[more]
XP_022986000.1	1.5e-16	84.31	protein trichome birefringence-like 39 [Cucurbita maxima]	[more]

BLAST of ClCG07G013410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIN2	4.3e-14	64.71	Protein trichome birefringence-like 39 OS=Arabidopsis thaliana OX=3702 GN=TBL39 ...	[more]
Q67XC4	4.0e-12	56.86	Protein trichome birefringence-like 40 OS=Arabidopsis thaliana OX=3702 GN=TBL40 ...	[more]
Q8VY22	9.0e-12	60.78	Protein trichome birefringence-like 38 OS=Arabidopsis thaliana OX=3702 GN=TBL38 ...	[more]
Q6DR10	3.2e-09	50.98	Protein trichome birefringence-like 43 OS=Arabidopsis thaliana OX=3702 GN=TBL43 ...	[more]
Q940H3	4.2e-09	43.94	Protein trichome birefringence-like 36 OS=Arabidopsis thaliana OX=3702 GN=TBL36 ...	[more]

BLAST of ClCG07G013410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7Y2	2.5e-17	86.27	protein trichome birefringence-like 39 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0KEH7	3.3e-17	84.31	PMR5N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G227020 PE=3 ...	[more]
A0A6J1JCU6	7.4e-17	84.31	protein trichome birefringence-like 39 OS=Cucurbita maxima OX=3661 GN=LOC1114838...	[more]
A0A1S3CTT0	9.7e-17	82.35	protein trichome birefringence-like 39 OS=Cucumis melo OX=3656 GN=LOC103504406 P...	[more]
A0A6J1FXP7	1.6e-16	82.35	protein trichome birefringence-like 39 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of ClCG07G013410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42570.1	3.1e-15	64.71	TRICHOME BIREFRINGENCE-LIKE 39	[more]
AT2G31110.2	2.9e-13	56.86	Plant protein of unknown function (DUF828)	[more]
AT2G31110.1	2.9e-13	56.86	Plant protein of unknown function (DUF828)	[more]
AT1G29050.1	6.4e-13	60.78	TRICHOME BIREFRINGENCE-LIKE 38	[more]
AT2G30900.1	2.3e-10	50.98	TRICHOME BIREFRINGENCE-LIKE 43	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026057	PC-Esterase	PFAM	PF13839	PC-Esterase	coord: 69..123 e-value: 3.4E-9 score: 36.8
None	No IPR available	PANTHER	PTHR32285:SF71	PROTEIN TRICHOME BIREFRINGENCE-LIKE 39	coord: 66..123
IPR029962	Trichome birefringence-like family	PANTHER	PTHR32285	PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED	coord: 66..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G013410.1	ClCG07G013410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0016413	O-acetyltransferase activity