ClCG07G012530 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G012530
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Location	CG_Chr07: 28953506 .. 28953810 (-)
RNA-Seq Expression	ClCG07G012530
Synteny	ClCG07G012530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGGAGAACAGAGACTGAGAGTGGGAAAGCCATCTCCGGCCCAACTCTATTTATGAACTTACAAATAAAGCCTAAGGAATGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGCGGACTGTTAGCTAGTATGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGAAAGAGGTATGCATAAAAGTATTTGCCGCAAGGATAAATCCTAGAATTTCGTCTGCGAACAGGAAGGAGTTTACTTTTATTGA

mRNA sequence

ATGAAATGGAGAACAGAGACTGAGAGTGGGAAAGCCATCTCCGGCCCAACTCTATTTATGAACTTACAAATAAAGCCTAAGGAATGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGCGGACTGTTAGCTAGTATGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGAAAGAGGAAGGAGTTTACTTTTATTGA

Coding sequence (CDS)

ATGAAATGGAGAACAGAGACTGAGAGTGGGAAAGCCATCTCCGGCCCAACTCTATTTATGAACTTACAAATAAAGCCTAAGGAATGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGCGGACTGTTAGCTAGTATGTATCATCTTACGAGAATCGAGTATGGTATAGATCAACCGAAAGAGGAAGGAGTTTACTTTTATTGA

Protein sequence

MKWRTETESGKAISGPTLFMNLQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKEEGVYFY

Homology

[Close]

BLAST of ClCG07G012530 vs. NCBI nr
Match: KAG4914316.1 (hypothetical protein JHK87_051873 [Glycine soja])

HSP 1 Score: 117.1 bits (292), Expect = 7.2e-23
Identity = 51/58 (87.93%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKEEGV 80
          LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTR+EYGIDQP+EE +
Sbjct: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRLEYGIDQPEEESL 86

[Close]

BLAST of ClCG07G012530 vs. NCBI nr
Match: YP_009766596.1 (NADH dehydrogenase subunit J [Cadellia pentastylis] >QIS97131.1 NADH dehydrogenase subunit J [Cadellia pentastylis])

HSP 1 Score: 116.7 bits (291), Expect = 9.4e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Sbjct: 29 LQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. NCBI nr
Match: YP_009461730.1 (NADH dehydrogenase 19 kDa subunit [Chionanthus parkinsonii] >YP_009640261.1 NADH dehydrogenase 19 kDa subunit [Chionanthus mala-elengi] >QXE42745.1 NADH dehydrogenase 19 kDa subunit [Olea caudatilimba] >AUT83879.1 NADH dehydrogenase 19 kDa subunit [Chionanthus parkinsonii] >QBS50740.1 NADH dehydrogenase 19 kDa subunit [Chionanthus mala-elengi] >QXE42832.1 NADH dehydrogenase 19 kDa subunit [Olea caudatilimba] >QXE42919.1 NADH dehydrogenase 19 kDa subunit [Olea caudatilimba])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Sbjct: 29 LQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. NCBI nr
Match: YP_009635173.1 (NADH dehydrogenase 19 kDa subunit [Chionanthus brassii] >YP_009640349.1 NADH dehydrogenase 19 kDa subunit [Chionanthus quadristamineus] >YP_009641200.1 NADH dehydrogenase 19 kDa subunit [Chionanthus maxwellii] >YP_009644987.1 NADH dehydrogenase 19 kDa subunit [Olea paniculata] >QBS50298.1 NADH dehydrogenase 19 kDa subunit [Chionanthus brassii] >QBS50387.1 NADH dehydrogenase 19 kDa subunit [Chionanthus brassii] >QBS50827.1 NADH dehydrogenase 19 kDa subunit [Chionanthus maxwellii] >QBS51092.1 NADH dehydrogenase 19 kDa subunit [Chionanthus quadristamineus] >QBS53119.1 NADH dehydrogenase 19 kDa subunit [Olea paniculata])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Sbjct: 29 LQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. NCBI nr
Match: YP_009633419.1 (NADH dehydrogenase 19 kDa subunit [Noronhia brevituba] >QBS48362.1 NADH dehydrogenase 19 kDa subunit [Noronhia brevituba])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Sbjct: 29 LQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy Swiss-Prot
Match: Q4VZH2 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-25
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Sbjct: 29 LQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy Swiss-Prot
Match: B1NWF3 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Manihot esculenta OX=3983 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-25
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Sbjct: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy Swiss-Prot
Match: Q09X14 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Morus indica OX=248361 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-25
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Sbjct: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy Swiss-Prot
Match: B1A938 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Carica papaya OX=3649 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-25
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Sbjct: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy Swiss-Prot
Match: Q49KZ5 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-25
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Sbjct: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy TrEMBL
Match: A0A6H0E472 (NADH-quinone oxidoreductase subunit C OS=Cadellia pentastylis OX=32252 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Sbjct: 29 LQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy TrEMBL
Match: A0A4D5YC50 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Osmanthus delavayi OX=424906 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.0e-23
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Sbjct: 29 LQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy TrEMBL
Match: A0A2L0VCR9 (NADH-quinone oxidoreductase subunit C OS=Fraxinus chiisanensis OX=490838 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.0e-23
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKPK+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+DQP+E
Sbjct: 29 LQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy TrEMBL
Match: A0A218KG31 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.0e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Sbjct: 29 LQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. ExPASy TrEMBL
Match: A0A6H0ET75 (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=ndhJ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.0e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYGIDQP+E
Sbjct: 29 LQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEE 83

[Close]

BLAST of ClCG07G012530 vs. TAIR 10
Match: ATCG00420.1 (NADH dehydrogenase subunit J )

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-24
Identity = 48/55 (87.27%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 22 LQIKPKEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASMYHLTRIEYGIDQPKE 77
          LQIKP++WHSIAVILYVYGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG++Q +E
Sbjct: 29 LQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEE 83

The following BLAST results are available for this feature:

BLAST of ClCG07G012530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4914316.1	7.2e-23	87.93	hypothetical protein JHK87_051873 [Glycine soja]	[more]
YP_009766596.1	9.4e-23	94.55	NADH dehydrogenase subunit J [Cadellia pentastylis] >QIS97131.1 NADH dehydrogena...	[more]
YP_009461730.1	1.2e-22	92.73	NADH dehydrogenase 19 kDa subunit [Chionanthus parkinsonii] >YP_009640261.1 NADH...	[more]
YP_009635173.1	1.2e-22	92.73	NADH dehydrogenase 19 kDa subunit [Chionanthus brassii] >YP_009640349.1 NADH deh...	[more]
YP_009633419.1	1.2e-22	92.73	NADH dehydrogenase 19 kDa subunit [Noronhia brevituba] >QBS48362.1 NADH dehydrog...	[more]

BLAST of ClCG07G012530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH2	1.6e-25	94.55	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus OX=36...	[more]
B1NWF3	3.6e-25	92.73	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Manihot esculenta OX=...	[more]
Q09X14	3.6e-25	92.73	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Morus indica OX=24836...	[more]
B1A938	4.7e-25	90.91	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Carica papaya OX=3649...	[more]
Q49KZ5	4.7e-25	90.91	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Eucalyptus globulus s...	[more]

BLAST of ClCG07G012530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0E472	4.6e-23	94.55	NADH-quinone oxidoreductase subunit C OS=Cadellia pentastylis OX=32252 GN=ndhJ P...	[more]
A0A4D5YC50	6.0e-23	92.73	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Osmanthus delavayi OX...	[more]
A0A2L0VCR9	6.0e-23	92.73	NADH-quinone oxidoreductase subunit C OS=Fraxinus chiisanensis OX=490838 GN=ndhJ...	[more]
A0A218KG31	6.0e-23	94.55	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cucumis sativus var. ...	[more]
A0A6H0ET75	6.0e-23	94.55	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Trichosanthes kirilow...	[more]

BLAST of ClCG07G012530 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00420.1	1.1e-24	87.27	NADH dehydrogenase subunit J	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037232	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	SUPERFAMILY	143243	Nqo5-like	coord: 21..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G012530.1	ClCG07G012530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding