ClCG07G011330 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G011330
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr07: 27368328 .. 27369067 (+)
RNA-Seq ExpressionClCG07G011330
SyntenyClCG07G011330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATCCTTCTTTCTAAGACCTTCATTCTCTTCTTTTTCATCATCCTCATCTCCTCTTCCCTTCATTCAGGTACTCTTCTCCCTTTAATTCCCCCATTTTCAGTAACTTCATTATTATTGTTAATTCAAGTTTCAACCTACCCATTCCAATTCCTTTAATTACAAGATTAAAGAGAATTAAAGGGGAAAAAAAAAATAGTTGGTTTTGAACAACTCAAAATTCTATACAACCCTTTAACATCCAACAAATAAACTGTTAATATGAAACCAACACGAACCAAAAACAATAATGTCATTCGAACTCATTTCAAATGTGAACCATCATACTTCATTTGATTTTATTTTTTTCTTCTTCTTCTTATTTTTTTTGTTATCATTGAGAATAATCTCAATCTTAGAGTAAATACGTGGTTTATGATGATATTCCATTGCAGAAGGAGTTGACTGCCTGAGATTAAAGGAGGGTTTAAATGAAGAACCAAACCCTCGTGGTCAGGTATATTAAGCTAATTAATATATATATATATTTTTTTTCATTTTTTTAAGCATCAAAAGTTGAATTTATTTAAATTTGGTTGTGTTAATTAATTTAGCAGAGAATTGGGGAAGCAAAAGTGATGAGAAAGGTTTTGGGCATTGAAGCAATGTTGATGGATTATAATGAACCAAGTGCTAACCCAAGTCACGAGCCAAGAAAAGGAATCCCCGGAGGTCGACCAAACTTCAATCCATGA

mRNA sequence

ATGGCTTCCATCCTTCTTTCTAAGACCTTCATTCTCTTCTTTTTCATCATCCTCATCTCCTCTTCCCTTCATTCAGAAGGAGTTGACTGCCTGAGATTAAAGGAGGGTTTAAATGAAGAACCAAACCCTCGTGGTCAGCAGAGAATTGGGGAAGCAAAAGTGATGAGAAAGGTTTTGGGCATTGAAGCAATGTTGATGGATTATAATGAACCAAGTGCTAACCCAAGTCACGAGCCAAGAAAAGGAATCCCCGGAGGTCGACCAAACTTCAATCCATGA

Coding sequence (CDS)

ATGGCTTCCATCCTTCTTTCTAAGACCTTCATTCTCTTCTTTTTCATCATCCTCATCTCCTCTTCCCTTCATTCAGAAGGAGTTGACTGCCTGAGATTAAAGGAGGGTTTAAATGAAGAACCAAACCCTCGTGGTCAGCAGAGAATTGGGGAAGCAAAAGTGATGAGAAAGGTTTTGGGCATTGAAGCAATGTTGATGGATTATAATGAACCAAGTGCTAACCCAAGTCACGAGCCAAGAAAAGGAATCCCCGGAGGTCGACCAAACTTCAATCCATGA

Protein sequence

MASILLSKTFILFFFIILISSSLHSEGVDCLRLKEGLNEEPNPRGQQRIGEAKVMRKVLGIEAMLMDYNEPSANPSHEPRKGIPGGRPNFNP
Homology
BLAST of ClCG07G011330 vs. NCBI nr
Match: KAA0044962.1 (hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK16508.1 hypothetical protein E5676_scaffold21G003170 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-13
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 31 LRLKEGLNEE-PNPRGQQRIG-EAKVMRKVLG-IEAMLMDYNEPSANPSHEPRKGIPGGR 89
          + LKEGLNEE  NP GQ RIG + KVMRK+LG  E +LMDYNEPSANPSHEPR+G PGGR
Sbjct: 1  MSLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

BLAST of ClCG07G011330 vs. NCBI nr
Match: KAG6600410.1 (hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-11
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 11 ILFFFIILIS-SSLHSEGVDCLRLKEGLNEEPNPRGQQRIGEAKVMRKVLGIEAMLMDYN 70
          I+F F+I  S SS  + G     L+  LNE+PNP  Q+      VMRKVLG++A LMDY+
Sbjct: 7  IIFTFLIFTSPSSGRAHGPS---LQPDLNEKPNPYSQR-----IVMRKVLGMDATLMDYH 66

Query: 71 EPSANPSHEPRKGIPGGRPNFNP 93
          EP ANPSHEPR+G PGGR +FNP
Sbjct: 67 EPGANPSHEPRRGSPGGRASFNP 81

BLAST of ClCG07G011330 vs. NCBI nr
Match: KAG6577122.1 (hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 5.1e-09
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 50 GEAKVMRKVLGIEAMLMDYNEPSANPSHEPRKGIPGGRPNFNP 93
          G  +V RK+LG EA+LMDYNEPSANP HEPRKG PGGR +FNP
Sbjct: 27 GNVQVTRKLLGNEAILMDYNEPSANPRHEPRKGSPGGRASFNP 69

BLAST of ClCG07G011330 vs. NCBI nr
Match: KAG6600409.1 (hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 7.4e-08
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1  MASILLSKTFILFFFIILISSSLHSEGVDCLRLKEGLNEEPNPRGQQRIGEAKVMRKVLG 60
          MAS+   KTFI  F + +  +S  ++G   LRLKEGL + PNP GQ  I E K +RK+LG
Sbjct: 1  MASMAAFKTFIFIFLVFICPNSGDADG---LRLKEGL-KLPNPCGQVII-EKKGVRKLLG 60

Query: 61 IEAMLMDYNEPSANPSHEPRKGIPGGR 88
           E  L+DY  PS NP HEPR G PGGR
Sbjct: 61 AEE-LLDYASPSHNPRHEPRVGNPGGR 81

BLAST of ClCG07G011330 vs. NCBI nr
Match: KAG6577123.1 (hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 10 FILFFFIILISSSLHSEGVDCLRLKEGLNEEPNPRGQQRIGEAKVMRKVLGIEAMLMDYN 69
          F  FFFI L+ +  +S   D L LKEGL + PNP GQ R+ + KV RK+LG E    DY 
Sbjct: 7  FNTFFFIFLLFTYPNSGVADGLNLKEGL-KLPNPCGQVRVEKNKVARKLLGAEE-FSDYA 66

Query: 70 EPSANPSHEPRKGIPGGR 88
           P  N  HEPR G PGGR
Sbjct: 67 SPEHNRRHEPRIGSPGGR 82

BLAST of ClCG07G011330 vs. ExPASy TrEMBL
Match: A0A5A7TNM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003170 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-13
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 31 LRLKEGLNEE-PNPRGQQRIG-EAKVMRKVLG-IEAMLMDYNEPSANPSHEPRKGIPGGR 89
          + LKEGLNEE  NP GQ RIG + KVMRK+LG  E +LMDYNEPSANPSHEPR+G PGGR
Sbjct: 1  MSLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044962.15.8e-1373.77hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK1650... [more]
KAG6600410.14.2e-1155.42hypothetical protein SDJN03_05643, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577122.15.1e-0974.42hypothetical protein SDJN03_24696, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6600409.17.4e-0852.87hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577123.11.1e-0651.28hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TNM72.8e-1373.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G011330.2ClCG07G011330.2mRNA