ClCG07G011090 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G011090
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	SWIB domain-containing protein
Location	CG_Chr07: 27041272 .. 27043004 (+)
RNA-Seq Expression	ClCG07G011090
Synteny	ClCG07G011090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTCAAGCTCTATCAACCTCAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCATGATTTTGCAGATTTTTTTAAGCTACTAATGCCTGAGAAACTCATGTGGTTTATTTCAGGAACGATTTCCCTTTCTTCTAGTTTTGGAGCTTAGGTTATAATGTAGTGATATTCTGATGAAGAAAACCTAACATATCGAGTGTACTAGATTCAAATTTTGAGTTTACAAGACTAGTTTCTACCTTCTGCTTCCCCTTCTTTATGAACAGACGCTTTTTCTCTTACTTTCCAGATTGTACTGGTGCAAATATCACTGTTATTATTGCTTGTTTTGAACTTCTCTTCGATCCTGTAGTCTGTTGTCTTGATGTTAATGCATCACTTTGATCAGTTATATTCTACGTCTGTTTGCTTAGGTAGCACTTCGTTTTATTGCTATTGTCTCATCTACTGTTCTCTTTGAGCTATTGCCTTAATGTAAATCTTTATTCACATGTTATATTGTCTTATCAGATTAATTAAATTAAAATTCTTTGCTAATAAGGGATCGGTTCTCTTTATTCCTGTTCCCACTACCTTAGTATTTGTATCATACTGCTTTAAGATGCGACAATTGAGGAGATTTATTTTTCTATGGAAATTTATTTATATCTCCATCTTAGTGAACGAGGATCAAGTGGAGAGGGACAAGTTGGTTGAGAGTGATTGGTAAAATAATATTCCAATTCTAATGTTGAACTATGTTATGGGACAACTTTTAAGCCTTTAAGATTAATGGTAAGTGGCTGATGGTTGTTGTACTTCAGAAAGGAAAGGGAGAATGTGACTGCAGTGCAGAAATTGGCAAACGCTTATTGGAGAAAAGGGAAGACTGGAATTGGAGAGAAGTAAAAATGCTTTATTAATTAAGTGGTTAGTTTGTTTGAACAGATGACTTTTCTGTGTATTGGGATTACTGGAAGATAAAGACCGTATGGTGAATTTACTACGCTGATAATTTCAGTTGACTGTTCCTTCCGGAATAGAGGCATAGAGAGATGGAAAGAGAGAAGCTTAATTAGATTCAAACTTGAAGACCTCAAATAACTCAAACTGGGTGGAAGCAAATCCTAAAATAAAACAAATGCTGCTGTAAATTATTGGCAAACACTGAAATTATTACTCATAATACCTTGTAGTTTTAGTTATCAGGAAAAGTGTTTTAGATTTCGTCCTTCAAATAGGATTTTTTCCGACTAAACTTCTGTTCCCAATCAACTTTGCTTAGTCTCACATTTGTTTTAGATTTGGCTTGTTCACTAAAAGGTATCAGTTAGAAATATTTGCTTGCTTGTGTATTTCTTTTTGGGATGGGATGGTTGATGTGCTGAAAAGTTCTTTGGTTTGCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATTGTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA

mRNA sequence

ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTCAAGCTCTATCAACCTCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATTGTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA

Coding sequence (CDS)

ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTCAAGCTCTATCAACCTCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATTGTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA

Protein sequence

MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNRSSGIYLGFSIVLYMFKPHVKPLDLCP

Homology

[Close]

BLAST of ClCG07G011090 vs. NCBI nr
Match: XP_022136393.1 (uncharacterized protein LOC111008113 [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-32
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1   MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILH 60
           ++  K+Q K  L KFLGIPLVSPRGDIPILISKFLKLYQPQSPG+ KD+ WEENLKAIL 
Sbjct: 12  ILSKKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQSPGLRKDRIWEENLKAILC 71

Query: 61  GKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR 96
           GK G+G+  VNKILSPQFND SLRNMEM RQKD R
Sbjct: 72  GKDGVGMPEVNKILSPQFNDSSLRNMEMERQKDIR 106

[Close]

BLAST of ClCG07G011090 vs. NCBI nr
Match: KAG7015106.1 (hypothetical protein SDJN02_22739 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILH 60
          ++  KIQLK  L KFLGIPL++PRGDIPILI+KFLK YQ QSPGIGKD  WEENLKA LH
Sbjct: 12 LLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLH 71

Query: 61 G 62
          G
Sbjct: 72 G 72

[Close]

BLAST of ClCG07G011090 vs. NCBI nr
Match: KAG6577105.1 (hypothetical protein SDJN03_24679, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 5  KIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHG 62
          KIQLK  L KFLGIPLV+PRGDIPILI+KFLK YQ QSPGIGKD  WEENLKA LHG
Sbjct: 35 KIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG 91

[Close]

BLAST of ClCG07G011090 vs. NCBI nr
Match: XP_030947627.1 (uncharacterized protein LOC115971741 [Quercus lobata])

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-12
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +LHGK   G+  
Sbjct: 57  SEFRKFLNIPGTS-RSENALLISKFLKLYTAQSPGIKKDKIWEDNLNKLLHGKDRAGLPE 116

Query: 70  VNKILSPQFNDPSLRNMEMARQKDNR 96
           + K+LSPQFN     N E ++  DN+
Sbjct: 117 IAKLLSPQFNQQGGMNSE-SKTDDNK 140

[Close]

BLAST of ClCG07G011090 vs. NCBI nr
Match: KAF3951992.1 (hypothetical protein CMV_022410 [Castanea mollissima])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +LHGK   G+  
Sbjct: 56  SEFRKFLNIPGTS-RSENALLISKFLKLYTAQSPGIKKDKIWEDNLNKLLHGKDRAGLPE 115

Query: 70  VNKILSPQFNDPSLRNMEMARQKDNR 96
           + K+LSPQFN     N E ++  DN+
Sbjct: 116 IAKLLSPQFNQQGGMNSE-SKTVDNK 139

[Close]

BLAST of ClCG07G011090 vs. ExPASy TrEMBL
Match: A0A6J1C7G5 (uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008113 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1   MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILH 60
           ++  K+Q K  L KFLGIPLVSPRGDIPILISKFLKLYQPQSPG+ KD+ WEENLKAIL 
Sbjct: 12  ILSKKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQSPGLRKDRIWEENLKAILC 71

Query: 61  GKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR 96
           GK G+G+  VNKILSPQFND SLRNMEM RQKD R
Sbjct: 72  GKDGVGMPEVNKILSPQFNDSSLRNMEMERQKDIR 106

[Close]

BLAST of ClCG07G011090 vs. ExPASy TrEMBL
Match: A0A2N9FY31 (SWIB domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23399 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFLGIP  S R    +LISKFLKLY  QSPGI KD  WE+NL  +LHGK  +G+  
Sbjct: 55  SEFRKFLGIPGTS-RSPNALLISKFLKLYTAQSPGIKKDNIWEDNLNKLLHGKDRVGLPE 114

Query: 70  VNKILSPQFNDPSLRNMEMARQKDNR 96
           + K+LSPQFN     N E ++ +DN+
Sbjct: 115 IAKLLSPQFNQKGGMNAE-SKTEDNK 138

[Close]

BLAST of ClCG07G011090 vs. ExPASy TrEMBL
Match: A0A7N2N264 (SWIB domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.8e-13
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +LHGK   G+  
Sbjct: 57  SEFRKFLNIPGTS-RSENALLISKFLKLYTAQSPGIKKDKIWEDNLNKLLHGKDRAGLPE 116

Query: 70  VNKILSPQFNDPSLRNMEMARQKDNR 96
           + K+LSPQFN     N E ++  DN+
Sbjct: 117 IAKLLSPQFNQQGGMNSE-SKTDDNK 140

[Close]

BLAST of ClCG07G011090 vs. ExPASy TrEMBL
Match: A0A6A1WNV5 (SWIB domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR1G019542 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFLGIP  + R    +LISKF++LY  +SPGI KD  WEENLK +LHGK  +G+  
Sbjct: 41  SEFRKFLGIP-PNSRSQNALLISKFIRLYTFRSPGIHKDHVWEENLKRLLHGKDRVGLPE 100

Query: 70  VNKILSPQFNDP 82
           + K+LSPQFN P
Sbjct: 101 IAKVLSPQFNQP 111

[Close]

BLAST of ClCG07G011090 vs. ExPASy TrEMBL
Match: A0A4P1QT43 (SWIB domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25457 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S L KF+GIP  S R +I ++ISKFLKLY  +SPGI KDK WE+NL+ +L GK  IG   
Sbjct: 45  SELCKFIGIPQQS-RSEIALIISKFLKLYNFKSPGIKKDKIWEQNLQTLLRGKNSIGFPE 104

Query: 70  VNKILSPQFNDPSLRNME 88
           V KILSP+F+  ++   E
Sbjct: 105 VAKILSPEFSQGAINIKE 121

[Close]

BLAST of ClCG07G011090 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 20/55 (36.36%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 24  RGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQF 79
           RG     + +++KL+  Q+P   K+ + ++ LK I  GK  +GIT + K+LSP F
Sbjct: 54  RGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

The following BLAST results are available for this feature:

BLAST of ClCG07G011090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136393.1	2.5e-32	76.84	uncharacterized protein LOC111008113 [Momordica charantia]	[more]
KAG7015106.1	2.3e-17	75.41	hypothetical protein SDJN02_22739 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577105.1	3.0e-17	82.46	hypothetical protein SDJN03_24679, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_030947627.1	1.0e-12	52.33	uncharacterized protein LOC115971741 [Quercus lobata]	[more]
KAF3951992.1	1.3e-12	52.33	hypothetical protein CMV_022410 [Castanea mollissima]	[more]

BLAST of ClCG07G011090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G011090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7G5	1.2e-32	76.84	uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A2N9FY31	1.7e-13	52.33	SWIB domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23399 PE=...	[more]
A0A7N2N264	4.8e-13	52.33	SWIB domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A1WNV5	1.4e-12	55.56	SWIB domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR1G019542 PE...	[more]
A0A4P1QT43	1.4e-12	53.85	SWIB domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25457...	[more]

BLAST of ClCG07G011090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31760.1	1.4e-04	36.36	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 7..93
None	No IPR available	PANTHER	PTHR13844:SF42	TRANSCRIPTION REGULATOR SWI/SNF-BAF60B FAMILY-RELATED	coord: 7..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G011090.2	ClCG07G011090.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus