ClCG07G011050 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G011050
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionNine-cis-epoxycarotenoid dioxygenase 4
LocationCG_Chr07: 26976737 .. 26978532 (-)
RNA-Seq ExpressionClCG07G011050
SyntenyClCG07G011050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAGATGACATATCCGTCGTCCTCCTCCGCTGCTGTCTCTTCGGAGCTTTCTGTTTCCCTCGGCACGAAAAACGGCTCGCCGCCGTAGCAACCAGGTCCAAAAATCCTACACGCGACGATGCAGTCTCGGCGTTCTTCCTGAGAAACGTCGAGCTTCACCACTCCCGAAATCTTCGGCATTGGATCTCCGATACCGGCGTAAACGAACCTGTTCTTCTTTCCGACGTACGACGGATGTATCACTCCGAAGTCTAGGTTTCTGGTGGACAATGGCCGCCGAGTTACTATTCCTGTTTTCAGGTCGATTCTGACTTTTTCCACTAAGGCGTGAACTAGATCCATCCTCTCCAGTGTGTGTTCGACGGAGAGAATGTTTGGCGCCACTAAAACCAGAGCATCGTCTTCATCCCAAGCGTTAATGGCATGAATCAAGTTGAATCCAGGTACATCGAACCATTTCATCTTCGATTCGTCATTAGCATATCGAGGAATTAGTCCTACTCTTGAAATTTTCGATGGATCTGATCCGACTGGAGATCGTCCTTCTATTATCATCTGCATAGGGTTAAATCCAATCTGAATCTCTGTAAATACAGCGTATTTTTTAGTAATTGCAAAATCGTGTAGGAACGAAGGTCGATTCATCGAAAATATCGGCACATCGGACTGTTTGGCTCCGTTTTTGTCGAATCGAAAGAAGGTTAAAAACGGAGGCAAAGGACCGTACCGAAACGCAAATGCTTCGCCCGTATCGGAATCTACTTTCGGATGAGCAGTCATACTCATAGAAAGCTTTCCGTCGAAGTCATGGCGGCCGAGTGTTTCAATATCGCCGTTCGGAGTCAATCGAATTGGATACGGTAAATCGGACTCACCTAGGGCGTAAAGACGGTTACCGAAGAAAGCCAGACTAGTGTTTGCAAGACCAATACCGTTAGCCGGATTAAACTGGCCGGTTAACATCCGGCCGGCGGCGACGGCACCACGTGCGGCGGAGGCGGTCAGGCCATTAAAGCCGGAAAATACGTTGGGGAAAACAGGATGGCCAGCTTCACGCTCCAAAGTGTATTTGTAAGTCTTCACGTAACGACTGCACAGAACGGCGCGGCCATTGGAGATTCGAAGAGAGTGAAGCATTCCGTCGCCGTCGAACAAGTGGTAGGGCCCACGAGGAAGGTACTGAGGATTCGGGCCGTTACGAATGTACGCACCGTTGAGAGATGAAGGCAACGAGCCTTGGATGACTTCACACTCCGTCGGTGGAAGCTCGTCCACCGGAGCGAAGTTGTCGGCGAGGACGTACCGTGGATCCACCGACGGACTCACCGGCGGATTAATGAAGTTATTGATCAAATCGTCGAAGGCGTTGAAGAATCTCGCCGGTAGAGATGGGTCGACTCGTCTGGTAGAAGAGCCCTTCGCCATTGCTGGAGGGGGAGGAGGTCGTCGGGGCAAAGATGGCGATGGAGAATCAGCATCTGGTCGGGGGGCGGTCTTTTTTACTGTTTCTTCAGTGAGAACGGAGTTTATGGCAGTTGAAATGGGCGGCCGGGAGATGGAAATTGGGGGAGAGAGAAGGAGATTTCTACCGGAGAGGAAAGGGGAAGAAATGGCGTCCATTGTTGGGGAAAAAAATGATTCGAAAGCGAGTGAAGATAAAGCTTTTTCAGACTCGCATTGAAGCCCACAACTTTTTCAGACTCGCATTGATAAAGCTTGGTCCCGCAACTCCTTTGAAAGGTGATGGGAATTTAAAGGCTGGGAAGGGTAAAATAGGAACTCAAATTTGTT

mRNA sequence

ATGTATGAGATGACATATCCGTCGTCCTCCTCCGCTGCTGTCTCTTCGGAGCTTTCTGTTTCCCTCGGCACGAAAAACGGCTCGCCGCCTCTCGGCGTTCTTCCTGAGAAACGTCGAGCTTCACCACTCCCGAAATCTTCGGCATTGGATCTCCGATACCGGCGTAAACGAACCTGTTCTTCTTTCCGACGTACGACGGATGTATCACTCCGAAGTCTAGGTTTCTGGTGGACAATGGCCGCCGAGTTACTATTCCTGAACGAAGGTCGATTCATCGAAAATATCGGCACATCGGACTGTTTGGCTCCGTTTTTGTCGAATCGAAAGAAGGTTAAAAACGGAGGCAAAGGACCGTACCGAAACGCAAATGCTTCGCCCGTATCGGAATCTACTTTCGGATGAGCAGTCATACTCATAGAAAGCTTTCCGTCGAAGTCATGGCGGCCGAGTGTTTCAATATCGCCGTTCGGAGTCAATCGAATTGGATACGGTAAATCGGACTCACCTAGGGCGTAAAGACGGTTACCGAAGAAAGCCAGACTAGTGTTTGCAAGACCAATACCGTTAGCCGGATTAAACTGGCCGGTTAACATCCGGCCGGCGGCGACGGCACCACGTGCGGCGGAGGCGGTCAGGCCATTAAAGCCGGAAAATACGTTGGGGAAAACAGGATGGCCAGCTTCACGCTCCAAAGTGTATTTGTAAGTCTTCACGTAACGACTGCACAGAACGGCGCGGCCATTGGAGATTCGAAGAGAGTGAAGCATTCCGTCGCCGTCGAACAAGTGGTAGGGCCCACGAGGAAGGTACTGAGGATTCGGGCCGTTACGAATGTACGCACCGTTGAGAGATGAAGGCAACGAGCCTTGGATGACTTCACACTCCGTCGGTGGAAGCTCGTCCACCGGAGCGAAGTTGTCGGCGAGGACGTACCGTGGATCCACCGACGGACTCACCGGCGGATTAATGAAGTTATTGATCAAATCGTCGAAGGCGTTGAAGAATCTCGCCGGTAGAGATGGGTCGACTCGTCTGGTAGAAGAGCCCTTCGCCATTGCTGGAGGGGGAGGAGGTCGTCGGGGCAAAGATGGCGATGGAGAATCAGCATCTGGTCGGGGGGCGGTCTTTTTTACTGTTTCTTCAGTGAGAACGGAGTTTATGGCAGTTGAAATGGGCGGCCGGGAGATGGAAATTGGGGGAGAGAGAAGGAGATTTCTACCGGAGAGGAAAGGGGAAGAAATGGCGTCCATTGTTGGGGAAAAAAATGATTCGAAAGCGAGTGAAGATAAAGCTTTTTCAGACTCGCATTGAAGCCCACAACTTTTTCAGACTCGCATTGATAAAGCTTGGTCCCGCAACTCCTTTGAAAGGTGATGGGAATTTAAAGGCTGGGAAGGGTAAAATAGGAACTCAAATTTGTT

Coding sequence (CDS)

ATGTATGAGATGACATATCCGTCGTCCTCCTCCGCTGCTGTCTCTTCGGAGCTTTCTGTTTCCCTCGGCACGAAAAACGGCTCGCCGCCTCTCGGCGTTCTTCCTGAGAAACGTCGAGCTTCACCACTCCCGAAATCTTCGGCATTGGATCTCCGATACCGGCGTAAACGAACCTGTTCTTCTTTCCGACGTACGACGGATGTATCACTCCGAAGTCTAGGTTTCTGGTGGACAATGGCCGCCGAGTTACTATTCCTGAACGAAGGTCGATTCATCGAAAATATCGGCACATCGGACTGTTTGGCTCCGTTTTTGTCGAATCGAAAGAAGGTTAAAAACGGAGGCAAAGGACCGTACCGAAACGCAAATGCTTCGCCCGTATCGGAATCTACTTTCGGATGA

Protein sequence

MYEMTYPSSSSAAVSSELSVSLGTKNGSPPLGVLPEKRRASPLPKSSALDLRYRRKRTCSSFRRTTDVSLRSLGFWWTMAAELLFLNEGRFIENIGTSDCLAPFLSNRKKVKNGGKGPYRNANASPVSESTFG
Homology
[Close]
BLAST of ClCG07G011050 vs. NCBI nr
Match: GFY95220.1 (nine-cis-epoxycarotenoid dioxygenase 4 [Actinidia rufa])

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-06
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 87  NEGRFIENIGTSDCLAPFLSNRKKVKNGGKGPYRNANASPVSESTFG 134
           N+G   E IGTS  L P  SNRKKV+NGG GPYR AN SPVS S FG
Sbjct: 7   NDGVVSEKIGTSGILFPEASNRKKVRNGGIGPYRKANDSPVSGSVFG 53

[Close]
BLAST of ClCG07G011050 vs. ExPASy TrEMBL
Match: A0A0A0KXA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056645 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-13
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 31  LGVLPEKRRASPLPKSSALDLRYRRKRTCSSFRRTTDVSLRSLGFWWTMAAELLFLNEGR 90
           L VLPE  RASPLPKS A DL++RRKRTC+S RRT DVSL+SLGFW TMA+ LLFL  GR
Sbjct: 43  LDVLPEISRASPLPKSWASDLQHRRKRTCASSRRTRDVSLQSLGFWSTMASALLFLFSGR 102

Query: 91  F 92
           F
Sbjct: 103 F 103

[Close]
BLAST of ClCG07G011050 vs. ExPASy TrEMBL
Match: A0A7J0F936 (Nine-cis-epoxycarotenoid dioxygenase 4 OS=Actinidia rufa OX=165716 GN=Acr_10g0006050 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 87  NEGRFIENIGTSDCLAPFLSNRKKVKNGGKGPYRNANASPVSESTFG 134
           N+G   E IGTS  L P  SNRKKV+NGG GPYR AN SPVS S FG
Sbjct: 7   NDGVVSEKIGTSGILFPEASNRKKVRNGGIGPYRKANDSPVSGSVFG 53

The following BLAST results are available for this feature:
BLAST of ClCG07G011050 vs. NCBI nr
Match NameE-valueIdentityDescription
GFY95220.17.6e-0665.96nine-cis-epoxycarotenoid dioxygenase 4 [Actinidia rufa][more]
BLAST of ClCG07G011050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG07G011050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXA43.1e-1373.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056645 PE=4 SV=1[more]
A0A7J0F9363.7e-0665.96Nine-cis-epoxycarotenoid dioxygenase 4 OS=Actinidia rufa OX=165716 GN=Acr_10g000... [more]
BLAST of ClCG07G011050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G011050.1ClCG07G011050.1mRNA