ClCG07G010700 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G010700
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
LocationCG_Chr07: 26586130 .. 26592720 (+)
RNA-Seq ExpressionClCG07G010700
SyntenyClCG07G010700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCATTCATGGAGTGCCACGTGTCCCCTAGCGATCACATTTCTCAGATTATCAAGCTCCAGTTCCGTTTTGCGCCATTGCAGATTTTCGAGCTAAAGAAGAAGAAGAAGAAGAAGAAGAGAAGCTAATCGATCGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGTCCCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTATGGTAAAATTAGCCACCGATTGATGCGATTTTTGGCTTATTGGAGACGGTTAGGGGTTTAGTTTTTGGTTTATTTACGATTCTGACTCGTATAGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGAAGGGGCAAGGTTGGTATTCGGATCTCTGAATGTCTTCTTTCCATCGATGAAACTGGCGTTTTAGTAATCTTATTAGCTACTCTGCAACTTCAATTTGATACTGTTTTCGAATTTGATTGATTTAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGGGCCAATGTCGATGGCTACAGGTGAAACATCTGGCTCTGGTTTTGTTCAACCTGAATTCAAAGCGTTACTGTTTATGTTTAATTTGAAATCTTCCATTATCATCGTATCAACAAACCTCATGTGTCTTGTATTCTCAACTTTTGCAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGACGTCTATGTTGGTGGTAAGTTCTTCCACCACTTTTGAATCTGCAATCCTTTTCCTTTTGAATCGTTCATATAATGTATACAATTACAGGATTGAGTTTTATACGTTAGCAATTTGAATTGAATGTGCCTGCTGAATGAATCTATGATTGATTATTCATTTTGTGAATTTGTTACCACATAGGCATCTAATCTACTTTCAGTAGACATTACAGGAATTGTAAAGAGCTGAAATCATGAGTAATATGAGTTGAAAAGTGGGTTTTCAAATTCTAATGTTTTCTCAGTCAGAATCATTGATTTTTTTTTTTTTTTAATCATGAATTTCTTTTGTTGATCTACTTCGGCTATTAATGGAGTTCATCTATCTTCTTCATAAACCTTAAAAGTTATATTTTATTATTATTATTAGTTTGTTTTAGCGTAACAAATACATTTTTAAAAACATTATATCATTTTTGTATTTAAGGAAGTTCTAGGTCAATAAGTCTTATTCATTTTATGCATAAAAAATTGACTTCTCTGACAAGCATTAGAACATACATCACCACTAGAGTTCACTTGACGACATAAAAGCTACAGATTATGACAGGCCATTCATTTCGTATATTCTTAACCATCTCTTTCATATAATAGGTTTGAATAATAATTCAAAAATAAAGTATTGATATAAAATAGATAACATTGTTTGGATTGAATTCGACCATTCTTACTTTATAAGTAGCAACTAGCATGTTAAATTACTTTTTGATCCAACTATGTGCATTTGATTTTGATTAATTTAGAGTTAGTTTTCATGTAAATATCCATGCAGAGGACTTACATCAAAATTATCATAACAAACAGAAGTTAATATCAATACCTTGCGTGAAACATTAAAAACCAAACATTAAGGGATAAAATTGAGATATGGAATATTGCATTGGGATAAAACATGAACATATTTGTTGATATATTGTGGACAACATTGAATTTTAGGTACTACTGGATTGGCCATTTGGGCAGCGACCTTGGCTGGCCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACTAGTGCTTTGGTGCAGTAAGCTGGAGGAAAGTTGAACTGGTTTTTTTTTTTTTTTTTTTTTTTTTACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTGTGTAATTATCTGGACAATTGCGTCGTAAATGCTTGGTAAGATGTTTCTTCTCTTTCCCATCTTTTCTTCTTGTTCTTTCCTTTACTCTGTATATTAGGGATGAAATGACTTTGAAATCACTTTTGGAAAGAGTACTTTTTAGCTCAAACAATTCTTTTACTGGTACTTTTTAACACTAGTTAAAGTGCTTTTTAAGGGGCGTTTGAAGAGAAATTTTGTACGGATTAGTCTTTTTTGAGATGTCCAAATAAAAATGGTCTACGATTAAAAAATGCTCGAAAAATGGTCTTTTGCTTACGTTAGCCACGTGGAAAAGTATTCATTTGACTCCAAAATGTGCAAATGGGTATGACATCTCGTTCCTTCTTCTCGCGTTTTCCACTTGGAGGAGGAGTAGGTAGAAGAAATAATCGTTGACTAAAGAAAAGTGTAGATCAAGAGTGAGTAGTGAAGAGATGAAAGAAAGAATTGGGGTGATTTTGGTGATTTCATGAGGGAATGGCGAAGCAAAAGGCCAAAAAAAAAAAAAAAAACATTTGTTTTCAAAACCTAGGTCAAATCACTAACTATAATAATCAATTTTGGGCTATTCATACCATTTTTAAGTGTTTGAGGTGTTAAATTGATTATTATAATCAGCGATTTATAATAGTTGGTAGGTATATAGTTTGTATTATAGATTATTATAGTTTGTAATTTATAATAGTTGGGAACGCCATCTACTAAGTTGGAGCCCTCAAACATGTAATAAATTATCATGGCCCACTCTACTCACTTGAAGTCGGTGGCCCAAGCACCCTAAATGTTTATTTTTCATGAATGTTTAAATCCACCCTAATTAATAACCTAATTAAATAGACTAATTACAAGAATGTCTTAAATTCACAATTTTGTTTTTCATGAATGACCTAATGAGTTACAATATTACATACAAGTTAATTCCAAAAGTCTATAACATAACACCGCCCCTTAAAAAAAAAAAAATTACAATTCGAAAAGACACATATATGAAAAAAAAATTATGTAAATCATGTGCATCAAATTGGCTTCTTCCAAAACTATTTATTTTCTCTCCCCTTTGCCCCATTTTTTCCCACTCATTCACCCACCACCTATGACACCTTCTCCACCTTCTCTCCCACTCTCCATTTTTCTTCTCGCTCTACCAGCAACGACCCCTTACCATCAGTCCTCCTCAAAACGAGATGCTTTAGACACGACAGATTTGAGGTGAACTGCAAATGGCCGACACCAAATTTGAGGCATACCACAAACGAATGACACCAAATCTGAGGTCAGAGTGACAGATCTGAAGTCGGGTCTGAGGTTGTAGAGCTCTACGAATGGACGTTCACAATGGATATGGGTTGATCGACGCTAGATATGGTGGGCGACGTCGAATTTGAGGTAGCAGAGCTCCACGAATGAATGGCGGATTTGAGCAGAGCATGATTTCGCCAACACTCATGGTGTTGCTTCTAAGCCGGACATCGTTGCTGCTCCAAACCACCAGCACATGAAACTCATATGTAATGCCTAATATATATGTGGTTTATTTTTTATTTTTTATTATTTTTTTTAGTTTCAAATATGTTTTAGTTTATTTCAAATAATAGCTTATGCGCTAATTTATCATGTTAGCACTTAGCATTATTATTATATGATAAGAAGTTTATATTTGTAAAATAACTAAATATACAGTGTATATACGGAATATGATGCACCTCCTATCCCTCTTCTAGTATCTCATTAAAAAAAAATGTTGAATATATATATATATATATATATATATATATATATATATATATATATATATATAATACTAAAATTAAAATATGGAGTATATATTAGTCCCATTTGAAATAAACTTATATATATATATTAAGTAAACATTGTATATATACATAGAAAAATGAAACACTAATGAAAATGAAGATTAGTAACCATAATGATGCATTAAATGTGGTCCACCAAATTTGGGGATTCTAAATTTTAAGTTAAAATCTGAAATTTTTTAAAAAAGAAAAAATATATATTTGCAAAAATACTAAATATATAAGAAGATTACTATAAATAGAAAAAATATCAAACTATTTATAAATATAGAAGAATTTTAGTGTCTATTCACTTCTATTACTTGAGCAATAGAAGTTTATTGCAGTCTATAACTCAAGCGATAGACGTCTATCGTTGTCTATCGCTGATAGACAATGAAAATTTTTTATATATTTGTAAATAGTTTGACTCATTTTGCTATATTTGAAAACATCCCAAATATATATGTGTGTGTATATGATAAAGTATGTGAAATATATATCTCAATAGAAACGATATTAAAATTAAAATATGAAGTATATATTATATGACAACCTTAAATATGTACTTTTCTAAACGTATTTGAAATAATCTAGTGTATGTCTGAAATAACATTGTAATATTTGAAATAAACAAAGTTGAATGATTTAACCTTAAATATTCATATAATAATATAAAGAAGAACCCACCATCGGACACAAAAAGAAATGTGATTTTGGCCATTAACGGAAGAAAGCTCATATATAATTAACATATCATATTCCTTAATTTCAGAGAAATATACCATATTAGTTAATAATAAAATAGAAAATCGCTAAATGAGAACCGATAATTAATTATGATATATTGTGTAATTAATGATTATTAAAATAATAAAATTTCTAAATAATAATTAAAATTAAATACGGTTTGAAATTTTTAAATATTTTAATTATAAAATAATAAAAAATTTAATATGAGAGAGGTTGTATAGCATAGTTAAAATTGTAAAGAAAACCTCATAAATATTGCTATGAAATATAATTAAAATTTAGAATAATTTAATATGTAGATCATTCCTCTAAATCTTTCTTATTTTAAATTGAGGTGTTGTGCATTTTTAGCTTAAAATATATACAAGATCAGAGTGTTTGGATTTCTCACTTCAAATCTCGTGTTGGACTTAGTCATTAATTAATCACTTCTCGTTTTGTGATAACTATCATATGATCGAGATAAATATATTATATGAATTTCTTATCAAGTATCTCGATGATAGTTTCAATTTTGTTAGTTTTACAATTTTTAGTATGAGCTTTTATCAGATTTCATGTCGTAATGAGGACATTGACAAATTTATCTAACCACGAATATTTGAACTTTCAAACATGTTTAGTAGGTTATTTGACTTTTAATATTGTGGATAATAAGTCTTTAGATTTAATATAATATATGGTTATTTTCAAATATAGCAAAATGAACCAAAATATTTATAAATATAACAAAATATCATTATCTATTAGTGATCACTGATAGACTACTATCATTTATCACTGTTTATCAACGATGATAGTGACATTTTGCTATATTTCAAAATATTTTTAATAGTTTTGTCATTTAAAACGTATATTAATAATTTTTTAATAAAAAAATTGAATATATGAACGAACTTTCTTACCATCAAATTGTTTCAAATCCCCGAATTCGACCCTGGACTCCCAGGAAATTTGTTATAAACTTACACTTGAGTTTTTAATAGGAAAACTTGCATTTCATTGAATAATTTTTACATAATTTCAACGCGGCATAAGACTAAATTAATGCCTCATTTTCAATTAATTTTCAACGCAACACTCACTCACTTGCGAACTGTGATTGAATCAGTTGTCTTCCTCGACAATGTGGATCAAGGAAGTCCCCACCCGGGCCTACTCTGCTCTTCAAAATAGTTGCCCATATCTATGGTTTTTCCCCCATTTTCTTAGTTTTTGTCTTTTCTTATGTTGTTATTTGTATCGAGTGAGATAAAAGATAGTATATATATAGATATATGATAGAATCTGAAATGTGCTATTTTTCTTGGCTTAACTCGGGATCGTTATGTTATCTAATGTCTTAAATTTGTTATTTTGTAGGTACCGAACACCTAGGAGGTAGAATCGAGAGTTAGGGAGCAAATGGAACTAAAACAAATCAACTCAGAGCACTAACAAAACAACCATGTCAAATGGAAGAGGAAAATGTGAAAATGCCCCTTAGGGCAGGCACCACGCAACGTTATGACGCCGTGCGTGACGCCTAGGACAAAATGAAGGCCAAACAAAGGGCTGACGCTACGACGTTGTCCTGTGGTGCTGCAACACCCATCACACGACATAGGAACATCAGAGGTGCGTGCAACATGCGCATCACTAGGTCGTCGAAACACCGCAACGCTGCAACATGATGCTTCGATAGAGGGTAGCAATGCTGCGACATTGTGCCAAGGGCTGCAGCGCTGTGATACATCTTAA

mRNA sequence

GCCATTCATGGAGTGCCACGTGTCCCCTAGCGATCACATTTCTCAGATTATCAAGCTCCAGTTCCGTTTTGCGCCATTGCAGATTTTCGAGCTAAAGAAGAAGAAGAAGAAGAAGAAGAGAAGCTAATCGATCGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGTCCCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTATGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGAAGGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGGGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGACGTCTATGTTGGTGGTACTACTGGATTGGCCATTTGGGCAGCGACCTTGGCTGGCCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACTAGTGCTTTGGTGCAGCCAAACAAAGGGCTGACGCTACGACGTTGTCCTGTGGTGCTGCAACACCCATCACACGACATAGGAACATCAGAGGTGCGTGCAACATGCGCATCACTAGGTCGTCGAAACACCGCAACGCTGCAACATGATGCTTCGATAGAGGGTAGCAATGCTGCGACATTGTGCCAAGGGCTGCAGCGCTGTGATACATCTTAA

Coding sequence (CDS)

ATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGTCCCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTATGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGAAGGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGGGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGACGTCTATGTTGGTGGTACTACTGGATTGGCCATTTGGGCAGCGACCTTGGCTGGCCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACTAGTGCTTTGGTGCAGCCAAACAAAGGGCTGACGCTACGACGTTGTCCTGTGGTGCTGCAACACCCATCACACGACATAGGAACATCAGAGGTGCGTGCAACATGCGCATCACTAGGTCGTCGAAACACCGCAACGCTGCAACATGATGCTTCGATAGAGGGTAGCAATGCTGCGACATTGTGCCAAGGGCTGCAGCGCTGTGATACATCTTAA

Protein sequence

MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLAGLLAGGALLVYNTSALVQPNKGLTLRRCPVVLQHPSHDIGTSEVRATCASLGRRNTATLQHDASIEGSNAATLCQGLQRCDTS
Homology
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BLAST of ClCG07G010700 vs. NCBI nr
Match: XP_038876356.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 265.0 bits (676), Expect = 5.3e-67
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSA+GLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DG+DASGR+GKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWA TLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

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BLAST of ClCG07G010700 vs. NCBI nr
Match: XP_022136536.1 (photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia])

HSP 1 Score: 258.1 bits (658), Expect = 6.5e-65
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSA+GLPSLAR S  FKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DG+DASGR+GKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWA TLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

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BLAST of ClCG07G010700 vs. NCBI nr
Match: XP_008451826.1 (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK16392.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 3.2e-64
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSARGLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DGVDASGR+ KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWA TLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

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BLAST of ClCG07G010700 vs. NCBI nr
Match: XP_023553544.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.0 bits (650), Expect = 5.5e-64
Identity = 130/138 (94.20%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DGVDASGR+GKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWA TLA
Sbjct: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

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BLAST of ClCG07G010700 vs. NCBI nr
Match: KAA0062951.1 (photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 7.2e-64
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKSARGLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASMMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DGVDASGR+ KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWA TLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

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BLAST of ClCG07G010700 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 9.8e-56
Identity = 113/139 (81.29%), Postives = 127/139 (91.37%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSA-RGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM   SLKPAPF+VEK+A +GLPSLAR+S  F+V+ASG KK+KTDKPYGINGSM+L
Sbjct: 1   MASTVM---SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSL 60

Query: 61  RDGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATL 120
           RDGVDASGR+ KGKGVYQFVDKYGANVDGYSPIY+T DWSPSGDVYVGGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLV+NTSAL Q
Sbjct: 121 VGILAGGALLVFNTSALAQ 136

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BLAST of ClCG07G010700 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-54
Identity = 112/139 (80.58%), Postives = 125/139 (89.93%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK S +GLPSLAR+S  FKV ASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATL 120
           RDGVDASGR+ KGKGVYQ+VDKYGANVDGYSPIY+T +WSPSGDVYVGGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLVYNTSAL Q
Sbjct: 121 VGILAGGALLVYNTSALAQ 138

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BLAST of ClCG07G010700 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 7.0e-54
Identity = 111/139 (79.86%), Postives = 124/139 (89.21%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEK-SARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK S +GLPSL R+S  FKV ASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATL 120
           RDGVDASGR+ KGKGVYQ+VDKYGANVDGYSPIY+T +WSPSGDVYVGGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLVYNTSAL Q
Sbjct: 121 LGILAGGALLVYNTSALAQ 138

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BLAST of ClCG07G010700 vs. ExPASy Swiss-Prot
Match: P27202 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.8e-52
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 0 

Query: 1   MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK +ARGLPSL R    FK+ ASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAAT 120
           LRDGVDASGR+GKG GVY++VDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWA T
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALVQ 139
           LAG+LAGGALLVYNTSAL Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

[Close]
BLAST of ClCG07G010700 vs. ExPASy Swiss-Prot
Match: P49108 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 GN=PSBR PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-51
Identity = 111/141 (78.72%), Postives = 123/141 (87.23%), Query Frame = 0 

Query: 1   MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNS-VPFKVEASGGKKIKTDKPYGINGSM 60
           MAASVM +SV+LKPA FTVEK SARGLPSL R S   F++ ASG KKIKTDKP+G+NGSM
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 61  NLRDGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAA 120
           +LRDGVDASGR+GKG GVY+FVDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWA 
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 121 TLAGLLAGGALLVYNTSALVQ 139
           TLAG+LAGGALLVYNTSAL Q
Sbjct: 121 TLAGILAGGALLVYNTSALAQ 141

[Close]
BLAST of ClCG07G010700 vs. ExPASy TrEMBL
Match: A0A6J1C3S3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008214 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.1e-65
Identity = 131/138 (94.93%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSA+GLPSLAR S  FKVEASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DG+DASGR+GKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWA TLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]
BLAST of ClCG07G010700 vs. ExPASy TrEMBL
Match: A0A5D3CXX1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001860 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.6e-64
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSARGLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DGVDASGR+ KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWA TLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]
BLAST of ClCG07G010700 vs. ExPASy TrEMBL
Match: A0A1S3BSD1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492995 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.6e-64
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSARGLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DGVDASGR+ KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWA TLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]
BLAST of ClCG07G010700 vs. ExPASy TrEMBL
Match: A0A5A7VB86 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00450 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.5e-64
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKSARGLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASMMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DGVDASGR+ KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWA TLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]
BLAST of ClCG07G010700 vs. ExPASy TrEMBL
Match: A0A0A0KXH3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G064020 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.5e-64
Identity = 130/138 (94.20%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSA GLPSLAR S  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAATLA 120
           DG+DASGR+GKGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAATLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]
BLAST of ClCG07G010700 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R )

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-53
Identity = 110/140 (78.57%), Postives = 122/140 (87.14%), Query Frame = 0 

Query: 1   MAASVM-TSVSLKPAPFTVEK-SARGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK +ARGLPSL R    FK+ ASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRRGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAAT 120
           LRDGVDASGR+GKG GVY++VDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWA T
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALVQ 139
           LAG+LAGGALLVYNTSAL Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

The following BLAST results are available for this feature:
BLAST of ClCG07G010700 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876356.15.3e-6797.10photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida][more]
XP_022136536.16.5e-6594.93photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia][more]
XP_008451826.13.2e-6494.93PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK1... [more]
XP_023553544.15.5e-6494.20photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAA0062951.17.2e-6494.20photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa][more]
BLAST of ClCG07G010700 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q405199.8e-5681.29Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN... [more]
P061831.8e-5480.58Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN... [more]
Q401637.0e-5479.86Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081... [more]
P272023.8e-5278.57Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
P491081.9e-5178.72Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 ... [more]
BLAST of ClCG07G010700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3S33.1e-6594.93Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 ... [more]
A0A5D3CXX11.6e-6494.93Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3BSD11.6e-6494.93Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A5A7VB863.5e-6494.20Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=... [more]
A0A0A0KXH34.5e-6494.20Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis sativus OX=3659 GN=C... [more]
BLAST of ClCG07G010700 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79040.12.7e-5378.57photosystem II subunit R [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006814Photosystem II PsbRPFAMPF04725PsbRcoord: 40..136
e-value: 1.1E-49
score: 166.7
IPR006814Photosystem II PsbRPANTHERPTHR34369PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTICcoord: 1..138
NoneNo IPR availablePANTHERPTHR34369:SF8BNAANNG27100D PROTEINcoord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G010700.2ClCG07G010700.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010270 photosystem II oxygen evolving complex assembly
biological_process GO:0015979 photosynthesis
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0042651 thylakoid membrane
molecular_function GO:0003729 mRNA binding