ClCG07G010090 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G010090
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Trichome birefringence-like family
Location	CG_Chr07: 25810804 .. 25812179 (+)
RNA-Seq Expression	ClCG07G010090
Synteny	ClCG07G010090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACATGACAACTTGGGGTAAATGGCTCGACTCCAATATTGATCCTTCAAAGACCACTGTTTTTTTTTTTTCAAAGTGTTTCTATTTCTGCAATTCATATTGAGTAAATTTATGTGTATACTCATCACGCATAGGGTTGTTTTCAAATATAGTAAAATAACCAAAATATTTGTAAATATACCAAAATATCACTGACATTGACAGACTATTATCATTTATTACTGTTTCTTAGTGATAGACAATTACATTTTGCTATATATTGGAAAATATCGTTTTACTATTTAAAATAATTACCCTCAGACATATTTATATACATATATGATTTTTTTTATAAAAAAAAAACTTTATCTACTCAAATATATGCTTGTGTTTACCTTTTATATAATTAAAAAAGTTGTTTACATATATAGCAAAATGAGTTAACTTATTTACAAATATAGCAAAATGGCAACAAGTAGTCGATCACTGTCTATCAGTGATAAACACTAATAGATAAATAGTGATAGATGATAGTAGTCTATCACTATCTATAAATTTGAAATTTTTTTTTAACTATATTTGAAACTATTTCCAACAATATTGTCATTTAAAACAATTAGCCTAATTAAACTCGCTTTATTCTTTAAAAAAAGAAAAAAAACTCGCTTATCTTACTACTTTTAAAATTGTAGGATAACTAAAATGAAATTTAAGTAACATTGATTCATTACATTCTAAAATTTTGTAGTGTTTAATAATCACTCAAAATAGATTTTGAATCATGAGTATTTATTTTAAATACTTCTTATTTTATCAAAAATGTTTAAATGAAAATAATGAATTTTCTGAAGAAAAAAAAATTGTTTTTTAAGTTAATTCAAACGGACCCTTAATTTGGAGTTTGTTCAATTTTAATCCTTAGAGTTCTAATAAATCTAAAATTTAGTCTAGTTTATTGTTGATTTTTTCTTTTTAGTATTTTTACTCCAAATTATAAAAAAAAAAATTCAAATATTGCAGCTCTTTGCATGAAAATTCTTATTAAGTTATTATTATTAAGTTCATTTCGAGAAGAATTAACTTTAAAAAATTAAAATTAAGATTTATTTAAAATACATAAATTTAGATGAAATATTTTAAAATATAACAATATTTTAAATTAAAGTTTTATATACGATTAACTACTACTAAATTTTAATATTTCACATGCTACACACGTATTATTATGCATATATACATGCATGCATACAAAGTAATGATATTTGATAATTTTTATGAAAAAGATTAAATTTTCATCTCCTTATACTGACTCAACTAAGAAAAGATGGATATCCTTCCAATTCTATCCTTCTTGATTGTAGCCGCTGGTGCCTTCCTTGTGTTCCTGATATTTAG

mRNA sequence

ATGTACATGACAACTTGGGGTAAATGGCTCGACTCCAATATTGATCCTTCAAAGACCACTGTTTTTTTTTTTTCAAAATTAAATTTTCATCTCCTTATACTGACTCAACTAAGAAAAGATGGATATCCTTCCAATTCTATCCTTCTTGATTGTAGCCGCTGGTGCCTTCCTTGTGTTCCTGATATTTAG

Coding sequence (CDS)

ATGTACATGACAACTTGGGGTAAATGGCTCGACTCCAATATTGATCCTTCAAAGACCACTGTTTTTTTTTTTTCAAAATTAAATTTTCATCTCCTTATACTGACTCAACTAAGAAAAGATGGATATCCTTCCAATTCTATCCTTCTTGATTGTAGCCGCTGGTGCCTTCCTTGTGTTCCTGATATTTAG

Protein sequence

MYMTTWGKWLDSNIDPSKTTVFFFSKLNFHLLILTQLRKDGYPSNSILLDCSRWCLPCVPDI

Homology

[Close]

BLAST of ClCG07G010090 vs. NCBI nr
Match: XP_018503637.1 (PREDICTED: protein trichome birefringence-like 43 [Pyrus x bretschneideri])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 4   TTWGKWLDSNIDPSKTTVFFF----SKLNFHLLILTQLRKDGYPSNSIL-----LDCSRW 62
           TTW KW+DSN+D +KT VFF     +   +H+ +L+QLR DG+PS   L      DCS W
Sbjct: 263 TTWSKWVDSNVDANKTKVFFQGISPTHYVYHIYLLSQLRMDGHPSVYGLDGKHGNDCSHW 322

[Close]

BLAST of ClCG07G010090 vs. NCBI nr
Match: XP_008451728.1 (PREDICTED: protein trichome birefringence-like 42 [Cucumis melo] >TYK16262.1 protein trichome birefringence-like 42 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 42/118 (35.59%), Postives = 48/118 (40.68%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTWGKWLDSNI+PSKT VFF      H+                               
Sbjct: 237 LTTWGKWLDSNINPSKTIVFFQGVSAVHIDGNDWGEISTKNCQGEKQPIKGSKYPGPSLE 296

[Close]

BLAST of ClCG07G010090 vs. NCBI nr
Match: PON69831.1 (Trichome birefringence-like family [Parasponia andersonii])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 39/111 (35.14%), Postives = 45/111 (40.54%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTW  W+DSNIDPS T+VFF      HL                               
Sbjct: 234 LTTWANWVDSNIDPSNTSVFFQGVSAVHLNGKEWKDPKARNCRGQTQPVKGSRYPGEAIV 293

[Close]

BLAST of ClCG07G010090 vs. NCBI nr
Match: XP_042948305.1 (protein trichome birefringence-like 42 [Carya illinoinensis] >KAG6637134.1 hypothetical protein CIPAW_11G158500 [Carya illinoinensis])

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 39/116 (33.62%), Postives = 46/116 (39.66%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHLL------------------------------ 62
           +TTWGKW+DSNIDPSKT VFF      H++                              
Sbjct: 226 LTTWGKWIDSNIDPSKTRVFFQGVSASHIVGKEWNDPKAKDCRAETQPVEGSKYPGPKNP 285

[Close]

BLAST of ClCG07G010090 vs. NCBI nr
Match: KAG2681638.1 (hypothetical protein I3760_11G153700 [Carya illinoinensis] >KAG6689081.1 hypothetical protein I3842_11G157200 [Carya illinoinensis] >KAG7957039.1 hypothetical protein I3843_11G154300 [Carya illinoinensis])

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 39/116 (33.62%), Postives = 46/116 (39.66%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHLL------------------------------ 62
           +TTWGKW+DSNIDPSKT VFF      H++                              
Sbjct: 226 LTTWGKWIDSNIDPSKTRVFFQGVSASHIVGKEWNDPKAKDCRAETQPVEGSKYPGPKNP 285

[Close]

BLAST of ClCG07G010090 vs. ExPASy Swiss-Prot
Match: Q9ZV89 (Protein trichome birefringence-like 42 OS=Arabidopsis thaliana OX=3702 GN=TBL42 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-07
Identity = 35/115 (30.43%), Postives = 42/115 (36.52%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTW KW+D NIDPSKT VF+      HL                               
Sbjct: 232 LTTWSKWIDHNIDPSKTRVFYQGVSPVHLNGGEWGKPGKTCLGETVPVQGPSYPGRPNEG 291

[Close]

BLAST of ClCG07G010090 vs. ExPASy Swiss-Prot
Match: Q9SIN2 (Protein trichome birefringence-like 39 OS=Arabidopsis thaliana OX=3702 GN=TBL39 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-04
Identity = 34/114 (29.82%), Postives = 42/114 (36.84%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFS------------------------------------- 62
           MTTW +W+++ +DPSKT VFF                                       
Sbjct: 241 MTTWARWVNAYVDPSKTKVFFNGVSPTHYEGKDWGEPMNSCRSQTQPFYGRKYPGGTPMA 300

[Close]

BLAST of ClCG07G010090 vs. ExPASy Swiss-Prot
Match: Q9FG35 (Protein trichome birefringence OS=Arabidopsis thaliana OX=3702 GN=TBR PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.5e-04
Identity = 34/123 (27.64%), Postives = 47/123 (38.21%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFF--FSKLNF------------------------------- 62
           +TTWG+W++ N++P+K+ VFF  +S  +F                               
Sbjct: 462 LTTWGRWVEKNVNPAKSLVFFRGYSASHFSGGQWNSGGACDSETEPIKNDTYLTPYPSKM 521

[Close]

BLAST of ClCG07G010090 vs. ExPASy Swiss-Prot
Match: Q9LHL6 (Protein trichome birefringence-like 1 OS=Arabidopsis thaliana OX=3702 GN=TBL1 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.7e-04
Identity = 34/123 (27.64%), Postives = 45/123 (36.59%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFF--FSKLNF------------------------------- 62
           +TTWG+W+D N++P K+ VFF  +S  +F                               
Sbjct: 403 LTTWGRWVDKNVNPKKSLVFFRGYSPSHFSGGQWNAGGACDDETEPIKNETYLTPYMLKM 462

[Close]

BLAST of ClCG07G010090 vs. ExPASy Swiss-Prot
Match: Q67XC4 (Protein trichome birefringence-like 40 OS=Arabidopsis thaliana OX=3702 GN=TBL40 PE=2 SV=2)

HSP 1 Score: 43.9 bits (102), Expect = 7.7e-04
Identity = 35/114 (30.70%), Postives = 45/114 (39.47%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFF--------------------------------------- 62
           + TW +W+++NI PS+T VFF                                       
Sbjct: 239 LNTWARWINNNIVPSRTQVFFQGVSPVHYDGREWNEPLKSCNGQTQPFMGQRYPGGLPLG 298

[Close]

BLAST of ClCG07G010090 vs. ExPASy TrEMBL
Match: A0A5D3CXL9 (Protein trichome birefringence-like 42 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00310 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.1e-08
Identity = 42/118 (35.59%), Postives = 48/118 (40.68%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTWGKWLDSNI+PSKT VFF      H+                               
Sbjct: 237 LTTWGKWLDSNINPSKTIVFFQGVSAVHIDGNDWGEISTKNCQGEKQPIKGSKYPGPSLE 296

[Close]

BLAST of ClCG07G010090 vs. ExPASy TrEMBL
Match: A0A1S3BSZ2 (protein trichome birefringence-like 42 OS=Cucumis melo OX=3656 GN=LOC103492934 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.1e-08
Identity = 42/118 (35.59%), Postives = 48/118 (40.68%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTWGKWLDSNI+PSKT VFF      H+                               
Sbjct: 237 LTTWGKWLDSNINPSKTIVFFQGVSAVHIDGNDWGEISTKNCQGEKQPIKGSKYPGPSLE 296

[Close]

BLAST of ClCG07G010090 vs. ExPASy TrEMBL
Match: A0A2P5D954 (Trichome birefringence-like family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_086150 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 39/111 (35.14%), Postives = 45/111 (40.54%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTW  W+DSNIDPS T+VFF      HL                               
Sbjct: 234 LTTWANWVDSNIDPSNTSVFFQGVSAVHLNGKEWKDPKARNCRGQTQPVKGSRYPGEAIV 293

[Close]

BLAST of ClCG07G010090 vs. ExPASy TrEMBL
Match: A0A2P5FL55 (Trichome birefringence-like family OS=Trema orientale OX=63057 GN=TorRG33x02_057610 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 39/116 (33.62%), Postives = 45/116 (38.79%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTW  W+DSNIDPSKT VFF      HL                               
Sbjct: 234 LTTWANWVDSNIDPSKTKVFFQGVSAVHLNGKEWNDPKARNCKGQTQPVKGSRYPVPNHP 293

[Close]

BLAST of ClCG07G010090 vs. ExPASy TrEMBL
Match: A0A2I4GYP1 (protein trichome birefringence-like 42 OS=Juglans regia OX=51240 GN=LOC109012037 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 39/116 (33.62%), Postives = 45/116 (38.79%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFH-------------------------------- 62
           +TTWGKW+DSNIDPSKT VFF      H                                
Sbjct: 228 LTTWGKWIDSNIDPSKTRVFFQGVSAAHIDGKEWNDPKAKDCHAETQPVEGSKYPGPKNP 287

[Close]

BLAST of ClCG07G010090 vs. TAIR 10
Match: AT1G78710.1 (TRICHOME BIREFRINGENCE-LIKE 42 )

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-08
Identity = 35/115 (30.43%), Postives = 42/115 (36.52%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFSKLNFHL------------------------------- 62
           +TTW KW+D NIDPSKT VF+      HL                               
Sbjct: 232 LTTWSKWIDHNIDPSKTRVFYQGVSPVHLNGGEWGKPGKTCLGETVPVQGPSYPGRPNEG 291

[Close]

BLAST of ClCG07G010090 vs. TAIR 10
Match: AT2G42570.1 (TRICHOME BIREFRINGENCE-LIKE 39 )

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 34/114 (29.82%), Postives = 42/114 (36.84%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFFFS------------------------------------- 62
           MTTW +W+++ +DPSKT VFF                                       
Sbjct: 241 MTTWARWVNAYVDPSKTKVFFNGVSPTHYEGKDWGEPMNSCRSQTQPFYGRKYPGGTPMA 300

[Close]

BLAST of ClCG07G010090 vs. TAIR 10
Match: AT5G06700.1 (Plant protein of unknown function (DUF828) )

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 34/123 (27.64%), Postives = 47/123 (38.21%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFF--FSKLNF------------------------------- 62
           +TTWG+W++ N++P+K+ VFF  +S  +F                               
Sbjct: 462 LTTWGRWVEKNVNPAKSLVFFRGYSASHFSGGQWNSGGACDSETEPIKNDTYLTPYPSKM 521

[Close]

BLAST of ClCG07G010090 vs. TAIR 10
Match: AT2G31110.2 (Plant protein of unknown function (DUF828) )

HSP 1 Score: 43.9 bits (102), Expect = 5.5e-05
Identity = 35/114 (30.70%), Postives = 45/114 (39.47%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFF--------------------------------------- 62
           + TW +W+++NI PS+T VFF                                       
Sbjct: 239 LNTWARWINNNIVPSRTQVFFQGVSPVHYDGREWNEPLKSCNGQTQPFMGQRYPGGLPLG 298

[Close]

BLAST of ClCG07G010090 vs. TAIR 10
Match: AT2G31110.1 (Plant protein of unknown function (DUF828) )

HSP 1 Score: 43.9 bits (102), Expect = 5.5e-05
Identity = 35/114 (30.70%), Postives = 45/114 (39.47%), Query Frame = 0


Query: 3   MTTWGKWLDSNIDPSKTTVFF--------------------------------------- 62
           + TW +W+++NI PS+T VFF                                       
Sbjct: 91  LNTWARWINNNIVPSRTQVFFQGVSPVHYDGREWNEPLKSCNGQTQPFMGQRYPGGLPLG 150

The following BLAST results are available for this feature:

BLAST of ClCG07G010090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018503637.1	1.9e-07	49.25	PREDICTED: protein trichome birefringence-like 43 [Pyrus x bretschneideri]	[more]
XP_008451728.1	1.9e-07	35.59	PREDICTED: protein trichome birefringence-like 42 [Cucumis melo] >TYK16262.1 pro...	[more]
PON69831.1	1.2e-06	35.14	Trichome birefringence-like family [Parasponia andersonii]	[more]
XP_042948305.1	2.7e-06	33.62	protein trichome birefringence-like 42 [Carya illinoinensis] >KAG6637134.1 hypot...	[more]
KAG2681638.1	2.7e-06	33.62	hypothetical protein I3760_11G153700 [Carya illinoinensis] >KAG6689081.1 hypothe...	[more]

BLAST of ClCG07G010090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV89	7.4e-07	30.43	Protein trichome birefringence-like 42 OS=Arabidopsis thaliana OX=3702 GN=TBL42 ...	[more]
Q9SIN2	3.5e-04	29.82	Protein trichome birefringence-like 39 OS=Arabidopsis thaliana OX=3702 GN=TBL39 ...	[more]
Q9FG35	3.5e-04	27.64	Protein trichome birefringence OS=Arabidopsis thaliana OX=3702 GN=TBR PE=1 SV=1	[more]
Q9LHL6	7.7e-04	27.64	Protein trichome birefringence-like 1 OS=Arabidopsis thaliana OX=3702 GN=TBL1 PE...	[more]
Q67XC4	7.7e-04	30.70	Protein trichome birefringence-like 40 OS=Arabidopsis thaliana OX=3702 GN=TBL40 ...	[more]

BLAST of ClCG07G010090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXL9	9.1e-08	35.59	Protein trichome birefringence-like 42 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BSZ2	9.1e-08	35.59	protein trichome birefringence-like 42 OS=Cucumis melo OX=3656 GN=LOC103492934 P...	[more]
A0A2P5D954	5.9e-07	35.14	Trichome birefringence-like family OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A2P5FL55	2.2e-06	33.62	Trichome birefringence-like family OS=Trema orientale OX=63057 GN=TorRG33x02_057...	[more]
A0A2I4GYP1	2.2e-06	33.62	protein trichome birefringence-like 42 OS=Juglans regia OX=51240 GN=LOC109012037...	[more]

BLAST of ClCG07G010090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78710.1	5.3e-08	30.43	TRICHOME BIREFRINGENCE-LIKE 42	[more]
AT2G42570.1	2.5e-05	29.82	TRICHOME BIREFRINGENCE-LIKE 39	[more]
AT5G06700.1	2.5e-05	27.64	Plant protein of unknown function (DUF828)	[more]
AT2G31110.2	5.5e-05	30.70	Plant protein of unknown function (DUF828)	[more]
AT2G31110.1	5.5e-05	30.70	Plant protein of unknown function (DUF828)	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G010090.1	ClCG07G010090.1	mRNA