ClCG07G009865 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G009865
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
LocationCG_Chr07: 25519755 .. 25520545 (-)
RNA-Seq ExpressionClCG07G009865
SyntenyClCG07G009865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCATTAATCCTTCACGTTTCGACTTGGATACTTGCAGCACTTGGAGTGACTACTGCATAAGAAGGTGTTTGGGTGTGCACTGAATCAAAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATATTAGGTCAGTCGGGATTCGGCTGGAACGTGGAGTTCAAATGTGTCCAGGTTGAGAGGGAGATTTTCGATCTTTGGGTTTGGGTAAGATTCTAAAAAAAAAAAAAAAAAATTTACTCGTACGTGTTTAAAATGTAAATATTAATAATGTGTACGTGTATTAATGTAGAGTCATCCCAGTGTGAAGAGGATGTGGAACAAACCGTTTCCCCATTACGATGACCTCTCCACCGTCTTTGATAAAGATAGAGCTATCGGACAATCAAGTGAGGACCCACACGTGATGGCGAGTAATGCATTCAGAGAGTTTGAAGATGAGATTCGACTTGGATCGTAGAACTGTCACACACCTAATGTTCGCCAGTCAGATTCACCATTAAATCCGGATGGAATGATGAAGAGACAACAGAGCAATCTACAGGTAGAGCGACACTTATCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCAACATCATGAGATCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCGTGGCAGAAGGAGAAGTATGAGCTAGAGTTCAGTTGTCGGAAAGAAGTAGTAAACGCCATATACAGCATTGACGGCTTGAATGAGGATGACTAG

mRNA sequence

ATGCTCATTAATCCTTCACGTTTCGACTTGGATACTTGCAGCACTTGGAGTGACTACTGCATAAGAAGGTGTTTGGTATCAGAGATATTAGGTCAGTCGGGATTCGGCTGGAACGTGGAGTTCAAATGTGTCCAGGTTGAGAGGGAGATTTTCGATCTTTGGGTTTGGAGTCATCCCAGTGTGAAGAGGATGTGGAACAAACCGTTTCCCCATTACGATGACCTCTCCACCGTCTTTGATAAAGATAGAGCTATCGGACAATCAATCAGATTCACCATTAAATCCGGATGGAATGATGAAGAGACAACAGAGCAATCTACAGGTAGAGCGACACTTATCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCAACATCATGAGATCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCGTGGCAGAAGGAGAAGTATGAGCTAGAGTTCAGTTGTCGGAAAGAAGTAGTAAACGCCATATACAGCATTGACGGCTTGAATGAGGATGACTAG

Coding sequence (CDS)

ATGCTCATTAATCCTTCACGTTTCGACTTGGATACTTGCAGCACTTGGAGTGACTACTGCATAAGAAGGTGTTTGGTATCAGAGATATTAGGTCAGTCGGGATTCGGCTGGAACGTGGAGTTCAAATGTGTCCAGGTTGAGAGGGAGATTTTCGATCTTTGGGTTTGGAGTCATCCCAGTGTGAAGAGGATGTGGAACAAACCGTTTCCCCATTACGATGACCTCTCCACCGTCTTTGATAAAGATAGAGCTATCGGACAATCAATCAGATTCACCATTAAATCCGGATGGAATGATGAAGAGACAACAGAGCAATCTACAGGTAGAGCGACACTTATCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCAACATCATGAGATCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCGTGGCAGAAGGAGAAGTATGAGCTAGAGTTCAGTTGTCGGAAAGAAGTAGTAAACGCCATATACAGCATTGACGGCTTGAATGAGGATGACTAG

Protein sequence

MLINPSRFDLDTCSTWSDYCIRRCLVSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSIRFTIKSGWNDEETTEQSTGRATLIESSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD
Homology
BLAST of ClCG07G009865 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 120/161 (74.53%), Postives = 129/161 (80.12%), Query Frame = 0

Query: 26  VSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAI 85
           VSE+L QSGFGWN EFKCVQVE+EIFDLWV SH + K MWNK F HYDDLSTVF KDRA 
Sbjct: 79  VSEMLSQSGFGWNEEFKCVQVEKEIFDLWVRSHLNAKGMWNKSFLHYDDLSTVFGKDRAN 138

Query: 86  GQS-----IRFTIKSGWNDEETTEQSTGRAT-LIESSRGSKRKRPSFQAEMINIMRSTVE 145
             +         +     DEE  EQSTGRA+ L ESSRGSKRKRPSFQAEMI+IMRSTVE
Sbjct: 139 CHTPEVCQAESPLNQDEIDEEPAEQSTGRASVLAESSRGSKRKRPSFQAEMIDIMRSTVE 198

Query: 146 MQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
           MQ+THMGRLASWQKEKYELEF  RKEVVNAIYSIDGL+EDD
Sbjct: 199 MQSTHMGRLASWQKEKYELEFGRRKEVVNAIYSIDGLDEDD 239

BLAST of ClCG07G009865 vs. NCBI nr
Match: XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-54
Identity = 118/194 (60.82%), Postives = 137/194 (70.62%), Query Frame = 0

Query: 7   RFDLDTCSTWSDYCIRRC--------------------LVSEILGQSGFGWNVEFKCVQV 66
           RFD DT +T S++C+ +C                     +SE+L QSGF WN EFKCVQV
Sbjct: 27  RFDQDTYNTLSEFCMIKCPALNQNTIECKVRSLKKQYNAISEMLSQSGFDWNEEFKCVQV 86

Query: 67  EREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSIRFTIKSGWNDEETTEQS 126
           EREIF+LWV SHP+ K MWNKPFPHYDDLST  D        I   +     DEE TEQS
Sbjct: 87  EREIFNLWVRSHPNAKGMWNKPFPHYDDLST--DCHTPEVCQIESLLNQDEIDEEPTEQS 146

Query: 127 TGRATL-IESSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKE 180
           TGR ++ +ESSRGSKRKR SFQ EMI+IMRSTVEM +THMGRLASWQK+KYELEF  +KE
Sbjct: 147 TGRTSIPVESSRGSKRKRSSFQVEMIDIMRSTVEMHSTHMGRLASWQKKKYELEFGRQKE 206

BLAST of ClCG07G009865 vs. NCBI nr
Match: XP_038899910.1 (uncharacterized protein LOC120087100 [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-50
Identity = 116/186 (62.37%), Postives = 131/186 (70.43%), Query Frame = 0

Query: 29  ILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQS 88
           +L QSGFGWN EFKCVQVE+EIF+    SHP+ K MWNK FPHYDDLSTVF KDRA+GQS
Sbjct: 1   MLSQSGFGWNEEFKCVQVEKEIFNR---SHPNAKGMWNKSFPHYDDLSTVFGKDRAVGQS 60

Query: 89  ------------------------------IRFT---IKSGWNDEETTEQSTGRATL-IE 148
                                         +R T   +     DEE  EQSTGRA++ +E
Sbjct: 61  SEDPYVMAKNAFREFEDEIRLGSQDCRTAEVRQTESPLNQDEIDEEPAEQSTGRASVPVE 120

Query: 149 SSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSID 181
           +S+GSKRKRPSFQAEMI+IMRSTVEMQ+THMGRLASWQKEKYELEF   KEVVNAIYSID
Sbjct: 121 TSQGSKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEKYELEFEHWKEVVNAIYSID 180

BLAST of ClCG07G009865 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 208.8 bits (530), Expect = 4.0e-50
Identity = 112/161 (69.57%), Postives = 125/161 (77.64%), Query Frame = 0

Query: 26  VSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAI 85
           VSE+L QSGF WN EFKCVQVEREIFDLWV SHP+ K MW KPFPHYDDLS VF KDRA 
Sbjct: 79  VSEMLSQSGFNWNEEFKCVQVEREIFDLWVRSHPNAKGMWKKPFPHYDDLSAVFGKDRAD 138

Query: 86  GQS--IRFT---IKSGWNDEETTEQSTGRATL-IESSRGSKRKRPSFQAEMINIMRSTVE 145
             +  +R T   +     DEE  EQSTGRA++  ESSRGSKRKR SFQ EMI+I++STVE
Sbjct: 139 CHTPEVRQTESPLNQDEIDEEPAEQSTGRASVPTESSRGSKRKRSSFQVEMIDIVKSTVE 198

Query: 146 MQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
           MQ+THMGRLASWQ EKYELE    KEVVNAIY+ID L E+D
Sbjct: 199 MQSTHMGRLASWQNEKYELEL---KEVVNAIYNIDDLEEND 236

BLAST of ClCG07G009865 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-36
Identity = 88/155 (56.77%), Postives = 101/155 (65.16%), Query Frame = 0

Query: 26  VSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAI 85
           VSE+L QSGF WN EFKCVQVEREIFD WV SHP+ K MWNKPFPHYDDLSTVF K +A+
Sbjct: 117 VSEMLSQSGFDWNEEFKCVQVEREIFDPWVRSHPNAKGMWNKPFPHYDDLSTVFGKYKAV 176

Query: 86  GQSIRFTIKSGWNDEETTEQSTGRATLIESSRGSKRKRPSFQAEMINIMRSTVEMQNTHM 145
           GQS           E+    +T                  F+ E+    +     ++THM
Sbjct: 177 GQS----------SEDPYVMTTNAFR-------------EFEDEIRLGSQDCHTPESTHM 236

Query: 146 GRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
           GRLASWQKEKYELEF  RKEVVNAIY+IDGL+EDD
Sbjct: 237 GRLASWQKEKYELEFGRRKEVVNAIYNIDGLDEDD 248

BLAST of ClCG07G009865 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-21
Identity = 60/178 (33.71%), Postives = 92/178 (51.69%), Query Frame = 0

Query: 34  GFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSI---- 93
           GFGWN + KC++ E+E+FD WV SHP+ K + NKP PHYDDL+  F KDRA G ++    
Sbjct: 4   GFGWNDDHKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPV 63

Query: 94  ---------------------------RFTIKSGWNDEETTEQSTGRATLIESSRGSKRK 153
                                       F       +E+     T + T+  SS GSKRK
Sbjct: 64  DMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRK 123

Query: 154 RPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
           R  + +EM++++R+ + MQ  H+ ++A+W  +K E + + RK V + +  I  L  +D
Sbjct: 124 RSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEAND 180

BLAST of ClCG07G009865 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 64/179 (35.75%), Postives = 89/179 (49.72%), Query Frame = 0

Query: 33  SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIG------ 92
           SGFGWN EF+C+  ER++FD W+ SHP+ K + +K FP+YDDLS VF KDRA G      
Sbjct: 90  SGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF 149

Query: 93  QSIRFTIKSGWND----------EETTEQSTG-----------RATLIESSRG----SKR 152
            ++   + + +ND          +  T  S G           RA      R     SKR
Sbjct: 150 PNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKR 209

Query: 153 KRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
           KR S + E + ++RS +E  N  +  +A W KEK  +E   R +VV  +  I  L   D
Sbjct: 210 KRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQD 268

BLAST of ClCG07G009865 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 64/179 (35.75%), Postives = 89/179 (49.72%), Query Frame = 0

Query: 33  SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIG------ 92
           SGFGWN EF+C+  ER++FD W+ SHP+ K + +K FP+YDDLS VF KDRA G      
Sbjct: 90  SGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF 149

Query: 93  QSIRFTIKSGWND----------EETTEQSTG-----------RATLIESSRG----SKR 152
            ++   + + +ND          +  T  S G           RA      R     SKR
Sbjct: 150 PNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKR 209

Query: 153 KRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
           KR S + E + ++RS +E  N  +  +A W KEK  +E   R +VV  +  I  L   D
Sbjct: 210 KRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQD 268

BLAST of ClCG07G009865 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 56/186 (30.11%), Postives = 97/186 (52.15%), Query Frame = 0

Query: 26  VSEILGQ--SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDR 85
           ++E++G   SGFGWN   KC++VE+ +FD WV  HP+ + + NKPFP++ DL  VF +DR
Sbjct: 189 IAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDR 248

Query: 86  AIGQSIRFTIKSGWNDEETTEQSTGRATLIE----------------------------- 145
           A G   +  ++        TE+      L +                             
Sbjct: 249 ATGGRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAG 308

Query: 146 SSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSID 181
           SSR SK++R S+  ++++  R+++   +  +G++A+WQ+EK E+E S  K +   + +I 
Sbjct: 309 SSRPSKKRR-SYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIP 368

BLAST of ClCG07G009865 vs. ExPASy TrEMBL
Match: A0A5D3CH30 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00140 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.4e-18
Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = 0

Query: 33  SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSIRFT 92
           SGFGWN E KC+  E+E+FD   WSHP+VK + NK F HYD+LS VF KDRA G      
Sbjct: 85  SGFGWNDEKKCIVAEKEVFD--DWSHPTVKGLLNKSFVHYDELSYVFGKDRATGGRAESF 144

Query: 93  IKSGWNDEETTEQSTGRATLIESSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQ 152
              G ND   T + + R  +   S GSKRKR     +  +I+R+ +E  N  + R+A W 
Sbjct: 145 ADIGSNDPAGTARVSERRNV---SSGSKRKRTGHAIDSGDIVRTAIEYGNEQLHRIAEWL 204

Query: 153 KEKYELEFSCRKEVVNAIYSIDGL 177
             + +     R+E+V  + +I  L
Sbjct: 205 ILQRQDATQTRQEIVRQLEAIPEL 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896380.11.1e-5574.53uncharacterized protein LOC120084641 [Benincasa hispida][more]
XP_038877407.14.6e-5460.82uncharacterized protein LOC120069696 [Benincasa hispida][more]
XP_038899910.12.3e-5062.37uncharacterized protein LOC120087100 [Benincasa hispida][more]
XP_038887234.14.0e-5069.57uncharacterized protein LOC120077425 [Benincasa hispida][more]
XP_038895773.11.1e-3656.77uncharacterized protein LOC120083935 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DW733.2e-2133.71uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7U0H78.8e-1935.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L38.8e-1935.75uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5D3C7T42.6e-1830.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CH307.4e-1840.28Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..114
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 25..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G009865.1ClCG07G009865.1mRNA