ClCG07G009090 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G009090
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr07: 24017673 .. 24018308 (-)
RNA-Seq ExpressionClCG07G009090
SyntenyClCG07G009090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCAATATTGGGAATCCGCAAGCCTCCAAGAATTGGTCCTGGAAGAGTAAATTTCAAAGTAAACGACATTAACAGAATCAAAAGGGACAGCGCAGACAAGTTGGAAGTGGGAGTAGAAGTTGTAAGTGGAGGGAGTAAAAGCGAGGGCAAGGGCAGTGGCAGAGCCGTGGAAGAGAGTGGGTTCAGGGAGTTTTGTCCATTGTTGGGTGGTGGGATTAGTGATGAAATAAGTGTTTTCTTGGAAAGTGCTTTTGCAGCAGAGGAGGCCGTGGGAAGTGGTTCTGATGGTGGAGGATTCCGGGAGGAAGAAGAGGGAAGTGGAGGAAGGGAAGCCGTGAGAGTGGTGGTGGAGAGGGATGAAGAAGGGGCAGAGACGGTGGTTGGATTGAGAGACGAAGCCGGAGGTTTTAGTGAAGTGAGTTGCCTGTTGGTGGGCGAAGAAGGGGGAACTGATCCAATTGTACCAGTTTTTGGAGACGGATTTGAATCTGATCAACGATTTTGCTGGGACGAAACGAAGAACGTGCTTCAATATTGCTTCCTCAATCTCCATTTTTCTCCTGCATATTGCATTTTCAACACCATCTTTACATCCATTTTTTCAAACTGCTTCAAATCATTTCTTAAGTGA

mRNA sequence

ATGGTAGCAATATTGGGAATCCGCAAGCCTCCAAGAATTGGTCCTGGAAGAGTAAATTTCAAAGTAAACGACATTAACAGAATCAAAAGGGACAGCGCAGACAAGTTGGAAGTGGGAGTAGAAGTTGTAAGTGGAGGGAGTAAAAGCGAGGGCAAGGGCAGTGGCAGAGCCGTGGAAGAGAGTGGGTTCAGGGAGTTTTGTCCATTGTTGGGTGGTGGGATTAGTGATGAAATAAGTGTTTTCTTGGAAAGTGCTTTTGCAGCAGAGGAGGCCGTGGGAAGTGGTTCTGATGGTGGAGGATTCCGGGAGGAAGAAGAGGGAAGTGGAGGAAGGGAAGCCGTGAGAGTGGTGGTGGAGAGGGATGAAGAAGGGGCAGAGACGGTGGTTGGATTGAGAGACGAAGCCGGAGGTTTTAGTGAAGTGAGTTGCCTGTTGGTGGGCGAAGAAGGGGGAACTGATCCAATTGTACCAGTTTTTGGAGACGGATTTGAATCTGATCAACGATTTTGCTGGGACGAAACGAAGAACGTGCTTCAATATTGCTTCCTCAATCTCCATTTTTCTCCTGCATATTGCATTTTCAACACCATCTTTACATCCATTTTTTCAAACTGCTTCAAATCATTTCTTAAGTGA

Coding sequence (CDS)

ATGGTAGCAATATTGGGAATCCGCAAGCCTCCAAGAATTGGTCCTGGAAGAGTAAATTTCAAAGTAAACGACATTAACAGAATCAAAAGGGACAGCGCAGACAAGTTGGAAGTGGGAGTAGAAGTTGTAAGTGGAGGGAGTAAAAGCGAGGGCAAGGGCAGTGGCAGAGCCGTGGAAGAGAGTGGGTTCAGGGAGTTTTGTCCATTGTTGGGTGGTGGGATTAGTGATGAAATAAGTGTTTTCTTGGAAAGTGCTTTTGCAGCAGAGGAGGCCGTGGGAAGTGGTTCTGATGGTGGAGGATTCCGGGAGGAAGAAGAGGGAAGTGGAGGAAGGGAAGCCGTGAGAGTGGTGGTGGAGAGGGATGAAGAAGGGGCAGAGACGGTGGTTGGATTGAGAGACGAAGCCGGAGGTTTTAGTGAAGTGAGTTGCCTGTTGGTGGGCGAAGAAGGGGGAACTGATCCAATTGTACCAGTTTTTGGAGACGGATTTGAATCTGATCAACGATTTTGCTGGGACGAAACGAAGAACGTGCTTCAATATTGCTTCCTCAATCTCCATTTTTCTCCTGCATATTGCATTTTCAACACCATCTTTACATCCATTTTTTCAAACTGCTTCAAATCATTTCTTAAGTGA

Protein sequence

MVAILGIRKPPRIGPGRVNFKVNDINRIKRDSADKLEVGVEVVSGGSKSEGKGSGRAVEESGFREFCPLLGGGISDEISVFLESAFAAEEAVGSGSDGGGFREEEEGSGGREAVRVVVERDEEGAETVVGLRDEAGGFSEVSCLLVGEEGGTDPIVPVFGDGFESDQRFCWDETKNVLQYCFLNLHFSPAYCIFNTIFTSIFSNCFKSFLK
Homology
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BLAST of ClCG07G009090 vs. NCBI nr
Match: KAG6600607.1 (hypothetical protein SDJN03_05840, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-31
Identity = 90/160 (56.25%), Postives = 107/160 (66.88%), Query Frame = 0 

Query: 28  IKRDSADKLEVGVEVVSGGSKSEGKGSGRAVEESGFREFCPLLGGGISDEISVFLESAFA 87
           +K DS   LEVG +V SGGS+S+G G   ++++ G  E  P    G++ EI   LESA A
Sbjct: 1   MKGDSTGNLEVGFKVESGGSESKGNGRDISMKQRGLAELSPFHSSGVAYEIDAVLESALA 60

Query: 88  AEEAVGSGSDGGGFREEEEGSGGREAVRVVVERDEEGAETVVGLRDEAGGFSEVSCLLVG 147
           AEEAVGSGSDG GFREE +G    +A+ V VERDEE A   VGL +EAG F  V+ LLVG
Sbjct: 61  AEEAVGSGSDGSGFREEGKGREW-DAMGVRVERDEE-AVLAVGLGEEAGDFVVVNGLLVG 120

Query: 148 EEGGTDPIVPVFGDGFESDQRFCWDETKNVLQYCFLNLHF 188
           EEG  DP+VPVF DGFES Q F WDETK V  Y  L+ HF
Sbjct: 121 EEGRRDPLVPVFRDGFESAQGFGWDETKYVRLYHVLDAHF 158

The following BLAST results are available for this feature:
BLAST of ClCG07G009090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600607.11.3e-3156.25hypothetical protein SDJN03_05840, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of ClCG07G009090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG07G009090 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG07G009090 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G009090.1ClCG07G009090.1mRNA