ClCG07G008650 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G008650
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr07: 22860697 .. 22861293 (+)
RNA-Seq Expression	ClCG07G008650
Synteny	ClCG07G008650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGTACCTTCTGTGGAGTATCGTTGTGAGTGGATTTATGAGTATTCGGAGGAAGTTGGGATTGTATCGAAGGAACAATTTATCTCTAGTTTAGGCTTCCTAGTATATGACATCTCTGATCGTCAGTTAAGTATATTGCATGTTGATACAACGTGCAAAATGGGATTCCCAATGGTGGACTTTGGAGGGGTAACTGGGTCCTCTTCAGGATCTATGGTGGCTTTTATGCATTGTTTTTAGAAGTTATCTTTGACCCCAACAGGTGCTGAAGTGTTGGCTATTTATGAGGGTCTAAGATTGGCGGTTAGATTAGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAGATGCTCAGAGGCATAAGGAGAGTTTAGGTGGATTTAGCTAATTATGTGGCTGATATTATAAAGATTGCAGCTTCTTTCCAGTATGTGGTGTTCCACTATGTGACTCGTTCGTCAAATTCAGTGGCTGATGAGTTGACAAGGACGAGGGGTCAAGTGCTCTGTGGCGTGATTGCTTCCCCTCAAGGATTGTCTCTATGTACTCACATGATTTTTTTTTCTGACCAATTGTAG

mRNA sequence

ATGGAAGATGTACCTTCTGTGGAGTATCGTTGTGAGTGGATTTATGAGTATTCGGAGGAAGTTGGGATTGTATCGAAGGAACAATTTATCTCTAGTTTAGGCTTCCTAGTATATGACATCTCTGATCGTCAGTTAAGTATATTGCATGTTGATACAACGTGCAAAATGGGATTCCCAATGGTGGACTTTGGAGGGAAGTTATCTTTGACCCCAACAGGTGCTGAAGTGTTGGCTATTTATGAGGGTCTAAGATTGGCGGTTAGATTAGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAGATGCTCAGAGGCATAAGGAGAATTGCAGCTTCTTTCCAGTATGTGGTGTTCCACTATGTGACTCGTTCGTCAAATTCAGTGGCTGATGAGTTGACAAGGACGAGGGGTCAAGTGCTCTGTGGCGTGATTGCTTCCCCTCAAGGATTGTCTCTATGTACTCACATGATTTTTTTTTCTGACCAATTGTAG

Coding sequence (CDS)

ATGGAAGATGTACCTTCTGTGGAGTATCGTTGTGAGTGGATTTATGAGTATTCGGAGGAAGTTGGGATTGTATCGAAGGAACAATTTATCTCTAGTTTAGGCTTCCTAGTATATGACATCTCTGATCGTCAGTTAAGTATATTGCATGTTGATACAACGTGCAAAATGGGATTCCCAATGGTGGACTTTGGAGGGAAGTTATCTTTGACCCCAACAGGTGCTGAAGTGTTGGCTATTTATGAGGGTCTAAGATTGGCGGTTAGATTAGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAGATGCTCAGAGGCATAAGGAGAATTGCAGCTTCTTTCCAGTATGTGGTGTTCCACTATGTGACTCGTTCGTCAAATTCAGTGGCTGATGAGTTGACAAGGACGAGGGGTCAAGTGCTCTGTGGCGTGATTGCTTCCCCTCAAGGATTGTCTCTATGTACTCACATGATTTTTTTTTCTGACCAATTGTAG

Protein sequence

MEDVPSVEYRCEWIYEYSEEVGIVSKEQFISSLGFLVYDISDRQLSILHVDTTCKMGFPMVDFGGKLSLTPTGAEVLAIYEGLRLAVRLELSHMLVLFDSLVVIQMLRGIRRIAASFQYVVFHYVTRSSNSVADELTRTRGQVLCGVIASPQGLSLCTHMIFFSDQL

Homology

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BLAST of ClCG07G008650 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-04
Identity = 52/176 (29.55%), Postives = 79/176 (44.89%), Query Frame = 0


Query: 4   VPSVEYRCEWIYEYSEEV----------GIVSKEQFISSLGFLVYDISDRQLS------- 63
           +P    + EWI +Y+EEV           I    ++   LG +V   +D  +S       
Sbjct: 32  IPEALIKVEWILKYAEEVRMKYHNGMKRRIPRVNEWRPPLGGVVKMNTDAAVSEEGSGVG 91

Query: 64  ILHVDTTCKMGFPMVDFGGKLSLTPTGAEVLAIYEGLRLAVRLELSHMLVLFDSLVVIQM 123
           +L  +   ++   MVDF   +  TP  A++LAI EGL LA RL +  ++V  DSL  + +
Sbjct: 92  VLLREGNAEIVGAMVDF--HMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNL 151

Query: 124 L--------------RGIRRIAASFQYVVFHYVTRSSNSVADELTRTRGQVLCGVI 149
           +                IR  A  FQ + F +V R SN+VA  L R    + CG +
Sbjct: 152 IGDKSPWKGEAVSWVEDIRAFARDFQEICFQHVFRESNAVAYHLGRETISLRCGFL 205

The following BLAST results are available for this feature:

BLAST of ClCG07G008650 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG07G008650 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG07G008650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZK3	5.7e-04	29.55	uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of ClCG07G008650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 69..137 e-value: 1.8E-7 score: 31.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 53..142 e-value: 5.4E-6 score: 28.4
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 70..138 e-value: 7.75726E-10 score: 51.9312
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 65..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G008650.1	ClCG07G008650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity