ClCG07G008400 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G008400
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMuDRA-like transposase
LocationCG_Chr07: 22399419 .. 22403381 (-)
RNA-Seq ExpressionClCG07G008400
SyntenyClCG07G008400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTTCAGATTTATAACTTTTCAGACTTCTGGTGGGAAAGGAGAAGATGTCAATTCGTATTTTTTCTACTTGAAAGGGACACCAAGGAAATGACAATTTTTCTGCAACTGAGTGCTTCAGGAACGAGTTCTAGAAAATCTGTACGGAAGGGTAGAGGCCCAGATGAATTTTGGCCCAACATTCAAAATTAGCTGAAAAAATGGCTTTTGTTTGTGTCACACTTATGTGAAGTTACCAAACTGACTCTAAGCGCAAGCAAGGAATTGCAACGGGACGATATTCTCACTTCTCATGCCTCACAACTACGTCTTGCTCTTCGTTCTCGTACCACATTAGACCGCTTAGATGCATTTTTAAACGGTCATCTCGTTCCTTTCTACAACCTCTTGCACCTCATTCTTGTGTTCTCGTTCCATACCAGACGCACGAGATTCTCGTTCTCGTTCAACGTAGAGGCACGATTTCGTTCCCACCAGTTTGCTGCTATTTAATGATCCTATACGAATTTCCCATAAAATGCAAAAAATTATGTCCTTCCATTATTCTTTCAAATCAATTTAAGAATGATTGAATGGATGTGTATTTAAAATGAACAACAAAAAAAAAGGATGGGATGAAAGAACCCTCGGTTGGCTATTGAAAATCCATTTTCTATTTAGCTACAACATATCAAAGAGCAAAGAAACCAACATTTGTTACATTATAAAGGTCGTTGAATCATCAGATACATCAGCCGAAGTAAGTAAATGTTAAGTCTTCATTGTTTTCATTATTCTTTACCATTTGTAATGAATACCTAGAGTGTCTCATATGTTACACAATTGATAGACTTTGACTGAGAGAAACTAGACAATAGGAGCAAGCGTAGAGAGGAAGAGATGGCAAGAACAATAGTTAGAATGAACGAGAAAGACCAGTAAGAGAGAGAAGAGAGAGCGAGTAACGCGAGCGAGAAACGAGACTTTGACAGAGTTGTGATTTGTAATTTTCTGGTTAAGTTTTTGGAAGAGAAGCAACTTTTCATTCGGTATGGTGGTACATGGGATGAAAAAGGACAGTGCTACAAGGGAGGTCTTAGAAAGGGTATCATGGTGTCAACCACATTGAATTATTGTGAATCGATCGCTACATTATGCGAACTCTCAAAGGTTAGCTCTCCAGACTTCAAAATCATATTGAGGGTCAAATACAAACTGGACTGTGAATGTCCTCTAGTGTGCATAATGGACGATGGTGATGTGAAATTTCTGCTTTCAGATATTGAGCGTAATAGACCTTCTATATTTATTAGTTTTGAGGAAATTAACGAGGATGGAACTTTTGAGGACACATTTGTTGAACATGAAACCAGGTCGACAGCATGTCACACCCTACTTTTAAGAAACTAATGCGTTGAAGAGTCTATGAAGAAAAGAAGTAAAAGACCATGTTGGGCGCATGGTCAGGACCAAGGTAACGCATGGTATGGGTGGACGCATGGAAGTAAACCGAGAAGGGAAAGAAGTGAAACGCATAAGAGAAGATGTAAGCATTGGCGACGGTAAGACGCATAAGCAAGAAAGGAATTAAGTCATGTCGTGAAGTGTTGAAAGAGATCTAAGTCTGGGAAAGGTAGAATACTATAACAAACTAAGTAACACATAGACTATTAGCAAGGGATGTTCTTGGGTGTTGGATAAAGTGGAAGGATGAGATTACAAGCTCAAAGATTGGAGCAAGAGATGGACGCATACTAAATTATCATCAGAGATATTTTGGTACAAGGAGAAGGTTAAATGAATAACCTTGGATTACAAGCATACGAACGCATAGAGGAGTAATCAAGAAATCTTCAAGGATAGGAGGAAGATCATGGACGCATGATAGTATGCGGTTCAGGCTGACGCATGATATTATACAGTAAGACAAACGCATAGTAGTGTGCGGTGGAAAAACGAGTTTAAGGGAAGTATGGCCAAGAAATAGGGAAGTAAATAATGAAGCTCAAATCTTAAAGGAAACTCATAACGCATGGGGGTGTTGTGTTGAATGAATAGTTGTTTATTGGAAAATATTAGACGCATAGGATAAGCTTATAAAGGCTATGTGGCTTCATATAAACTTGACACCTTAAAAGTAGGAGGTGTTAAAAAGGCATGTTAAGTGTCTCATGCAAGGTGACGCTTGGATTAATGCATGGTTAATTAAGCATGCAGCGTGACATGTGGCAAACAAGTGGCAAAAGGAGAGGAGAAGTTGGATGGAAAGCTCCCTATAAATAGAACCTTGAGGGAAACGAAGCGACTGATGACTTTGAAAGAAAAATTCTGGAGAGAAAGGGAAGAAAGAAGGCAGAAAGGAGGAATCCTTGCGTCCGTAGTAGGAGTCTGCGACCAAGAGAGAAGGTATTTTTGACAACTTAGCTATTTTATGTAAAAGAAGTCATCTTGCGTCGAAAGGAGGTTGGCCTTGCGTTAAAGACAAATACTACGTTCAAGGTGAACGCTGCGTCCAAAGATAGGTGATGCGTTCAAGTTGAACCTTGCGTCCAAGAGAGGTTGACGCATCCAAAAGAGAAGTAAGAAGAGTTGGCTACACTTTGCGGAAGTAATCAACCTTGCATTGAAGAGGGGATTGCGGTAGTTATCAACCTTGCGTTGAAGGGCAGGGTTGCGTCCAACCGAGCTGACAGAGGAATATGGAGCTTTGCGTTTCTGAGTTAGACCGATGCGTCCAAGAAGCTCGGGAAGAGAAAATAGAGGGAAGGAAGAGGAAATTATTCTTGGGCAAAGTACAGGTGAGTAACACCTGCGTTTTTCAAAATATAAATGAGTTCCTTATGAATATGATTTTATGGGTTTCTAATGAATTAATGCATGCATTTTATTTAAAAAGTTTTGAGTATGCTAGTTACTTGCTATAAGTTTATAAAACGCATGGTGATTGATTGATGCATGTTTTCATGATTTTGCTGAAAAGCATGGTGTTATATGATTTTAAGAAAGATTTGGAATTAAACTTGTTGAAAAGCATGTTGTTTGATATTAAAGCTTGAAATTGAATTTAGCATGCTGTTGATGTGAGATTTGGAAACGGTTAACTTACAAGTTATTAAAATAATGTTTCCAAAATATGTATTGTGTTTTATAAAACTTTGAAAAGTCACCTGAGGCTGAGGGACTTCGGAGAAGGCCAAAGGGTAGTCGGGATATAGCAATGGGACCCCAATGCTCAGGGACTCGAAGAAGGCATTGTGGGCGGCCCGAATTCTAGTACCTATGTGCACATAGAGGTCTATACGACGTTGATGTGTTGAGAATACTCCACACAGCTAAGGAAAATTGACGTTGAGGAGCGTTGAGCATTGCTCTGCCTCAACTAGGGAAAAAGTATTTTGAAATGAATGAGAGTTTTGAGTATTTACTCTTAAACAGATATGCATGTTTTAACAATGGTATTTGAGTATATTTTAATATGATTTGAAGTCTTATATTTTATGGCAGTTTAACCAGTTTTATAGTTAAAGTATAATGTTTTCAGAAAACCATTACTCACTGAGCTGTTAACTCACCATTTTTATATGTTTTCCATTTTCAGGTAGCATGACAGTTCCCATTGCCGATCGAAGTCGAGGTTTGTCAAGAGTGCCTTAATGGTATTACTGTCTTAGGAAGGATTTATATGTAAGTGAGGTGAATTTGACAGTAGGTTATGTGACAGGGTAGTTGGTAACTGCTGTCCTCACACTCCGTCTCGTGCTACGGGAGGGTAGTTCGGGGTGGGGTGTGACACAACAGATGTAAATGAGGATCCAAAGATTTCCTGCAATATTGTCTACGGCAAACGACAGTGTGAACCCATGGGATTCGTACTCTACCCAACCTTGTTCAGGCCGGAAGAGAGGTCGTGATGGCCGTGTTGGGGATCGCATTGCTGTTGATATTGTTGTTGGCAGTGGGACAAATGAAAGTACCACATAA

mRNA sequence

ATGCTCGTTCAGATTTATAACTTTTCAGACTTCTGGTGGGAAAGGAGAAGATGTCAATTCGTATTTTTTCTACTTGAAAGGGACACCAAGGAAATGACAATTTTTCTGCAACTGAGTGCTTCAGGAACGAGTTCTAGAAAATCTGTACGGAAGGTTACCAAACTGACTCTAAGCGCAAGCAAGGAATTGCAACGGGACGATATTCTCACTTCTCATGCCTCACAACTACGTCTTGCTCTTCGTTCTCGTACCACATTAGACCGCTTAGATGCATTTTTAAACGGTCATCTCGTTCCTTTCTACAACCTCTTGCACCTCATTCTTGTGTTCTCGTTCCATACCAGACGCACGAGATTCTCGTTCTCGTTCAACGTAGAGGCACGATTTCGTTCCCACCACTACAACATATCAAAGAGCAAAGAAACCAACATTTGTTACATTATAAAGGTCGTTGAATCATCAGATACATCAGCCGAATTTTTGGAAGAGAAGCAACTTTTCATTCGGTATGGTGGTACATGGGATGAAAAAGGACAGTGCTACAAGGGAGGTCTTAGAAAGGGTATCATGGTGTCAACCACATTGAATTATTGTGAATCGATCGCTACATTATGCGAACTCTCAAAGGTTAGCTCTCCAGACTTCAAAATCATATTGAGGGTCAAATACAAACTGGACTGTGAATGTCCTCTAGTGTGCATAATGGACGATGGTGATGTGAAATTTCTGCTTTCAGATATTGAGCGCCGGAAGAGAGGTCGTGATGGCCGTGTTGGGGATCGCATTGCTGTTGATATTGTTGTTGGCAGTGGGACAAATGAAAGTACCACATAA

Coding sequence (CDS)

ATGCTCGTTCAGATTTATAACTTTTCAGACTTCTGGTGGGAAAGGAGAAGATGTCAATTCGTATTTTTTCTACTTGAAAGGGACACCAAGGAAATGACAATTTTTCTGCAACTGAGTGCTTCAGGAACGAGTTCTAGAAAATCTGTACGGAAGGTTACCAAACTGACTCTAAGCGCAAGCAAGGAATTGCAACGGGACGATATTCTCACTTCTCATGCCTCACAACTACGTCTTGCTCTTCGTTCTCGTACCACATTAGACCGCTTAGATGCATTTTTAAACGGTCATCTCGTTCCTTTCTACAACCTCTTGCACCTCATTCTTGTGTTCTCGTTCCATACCAGACGCACGAGATTCTCGTTCTCGTTCAACGTAGAGGCACGATTTCGTTCCCACCACTACAACATATCAAAGAGCAAAGAAACCAACATTTGTTACATTATAAAGGTCGTTGAATCATCAGATACATCAGCCGAATTTTTGGAAGAGAAGCAACTTTTCATTCGGTATGGTGGTACATGGGATGAAAAAGGACAGTGCTACAAGGGAGGTCTTAGAAAGGGTATCATGGTGTCAACCACATTGAATTATTGTGAATCGATCGCTACATTATGCGAACTCTCAAAGGTTAGCTCTCCAGACTTCAAAATCATATTGAGGGTCAAATACAAACTGGACTGTGAATGTCCTCTAGTGTGCATAATGGACGATGGTGATGTGAAATTTCTGCTTTCAGATATTGAGCGCCGGAAGAGAGGTCGTGATGGCCGTGTTGGGGATCGCATTGCTGTTGATATTGTTGTTGGCAGTGGGACAAATGAAAGTACCACATAA

Protein sequence

MLVQIYNFSDFWWERRRCQFVFFLLERDTKEMTIFLQLSASGTSSRKSVRKVTKLTLSASKELQRDDILTSHASQLRLALRSRTTLDRLDAFLNGHLVPFYNLLHLILVFSFHTRRTRFSFSFNVEARFRSHHYNISKSKETNICYIIKVVESSDTSAEFLEEKQLFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKYKLDCECPLVCIMDDGDVKFLLSDIERRKRGRDGRVGDRIAVDIVVGSGTNESTT
Homology
BLAST of ClCG07G008400 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-09
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 0

Query: 164 KQLFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY 223
           K LFIR+GGTW++    Y GG  KGI+V  T+ Y E    L  L KV    + +++RV Y
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 224 KLDCECPLVCIMDDGDVKFLL 245
            L C+ P + + DD D++F L
Sbjct: 65  HLACDSPPMFVTDDDDLRFAL 85

BLAST of ClCG07G008400 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-08
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 0

Query: 147 IIKVVESSDTSAEFLEEKQLFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCE 206
           ++ +V     S + + EK +  RYG  WDE    Y GG   GI+V  TL Y E  A +  
Sbjct: 106 LVSLVFVETWSQKRMTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYR 165

Query: 207 LSKVSSPDFKIILRVKYKLDCECPLVCIMDDGDVKFLL 245
           ++ V+  +F +++RVKYKLD E P + I +D DV   L
Sbjct: 166 VANVNCLEFDVVMRVKYKLDFEAPPLYIQNDDDVYIFL 203

BLAST of ClCG07G008400 vs. NCBI nr
Match: XP_022156834.1 (uncharacterized protein LOC111023667 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-06
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 164 KQLFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY 223
           ++LF+ YGG W+E G  Y+GG+  G+ V  T+ Y   ++ L  L+++    F +I++  Y
Sbjct: 22  RRLFVIYGGKWNEAGTMYEGGVMGGLDVDETITYANLVSALHMLTRIDPDQFDLIVQCVY 81

Query: 224 KLD--CECPLVCIMDDGDVKFLLS 246
           + D   E P   I DD  +KF L+
Sbjct: 82  RFDFRYEVPNYLIFDDSSLKFYLN 105

BLAST of ClCG07G008400 vs. NCBI nr
Match: XP_031742427.1 (uncharacterized protein LOC116404353 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 9.3e-06
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 166 LFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY-- 225
           + +RYGG WDE+ + Y+GG+ KGI+VS  + + +  A L +L++V    F +++R  Y  
Sbjct: 6   MLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIRCIYEI 65

Query: 226 KLDCECPLVCIMDDGDVKFLL 245
           K++ E P   + +D D+KF L
Sbjct: 66  KVEHEAPTFELSNDRDLKFYL 86

BLAST of ClCG07G008400 vs. NCBI nr
Match: XP_031745961.1 (uncharacterized protein LOC116406387 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 9.3e-06
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 166 LFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY-- 225
           + +RYGG WDE+ + Y+GG+ KGI+VS  + + +  A L +L++V    F +++R  Y  
Sbjct: 6   MLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIRCIYEI 65

Query: 226 KLDCECPLVCIMDDGDVKFLL 245
           K++ E P   + +D D+KF L
Sbjct: 66  KVEHEAPTFELSNDRDLKFYL 86

BLAST of ClCG07G008400 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-09
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 0

Query: 164 KQLFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY 223
           K LFIR+GGTW++    Y GG  KGI+V  T+ Y E    L  L KV    + +++RV Y
Sbjct: 5   KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 224 KLDCECPLVCIMDDGDVKFLL 245
            L C+ P + + DD D++F L
Sbjct: 65  HLACDSPPMFVTDDDDLRFAL 85

BLAST of ClCG07G008400 vs. ExPASy TrEMBL
Match: A0A6J1DUS4 (uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023667 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 164 KQLFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY 223
           ++LF+ YGG W+E G  Y+GG+  G+ V  T+ Y   ++ L  L+++    F +I++  Y
Sbjct: 22  RRLFVIYGGKWNEAGTMYEGGVMGGLDVDETITYANLVSALHMLTRIDPDQFDLIVQCVY 81

Query: 224 KLD--CECPLVCIMDDGDVKFLLS 246
           + D   E P   I DD  +KF L+
Sbjct: 82  RFDFRYEVPNYLIFDDSSLKFYLN 105

BLAST of ClCG07G008400 vs. ExPASy TrEMBL
Match: A0A2I7YUI4 (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-06
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 166 LFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY-- 225
           + +RYGG WDE+ + Y+GG+ KGI+VS  + + +  A L +L++V    F +++R  Y  
Sbjct: 6   MLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIRCIYEI 65

Query: 226 KLDCECPLVCIMDDGDVKFLL 245
           K++ E P   + +D D+KF L
Sbjct: 66  KVEHEAPTFELSNDRDLKFYL 86

BLAST of ClCG07G008400 vs. ExPASy TrEMBL
Match: A0A6N0C346 (MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-06
Identity = 30/81 (37.04%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 166 LFIRYGGTWDEKGQCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKIILRVKY-- 225
           + +RYGG WDE+ + Y+GG+ KGI+VS  + + +  A L +L++V    F +++R  Y  
Sbjct: 6   MLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIRCIYEI 65

Query: 226 KLDCECPLVCIMDDGDVKFLL 245
           K++ E P   + +D D+KF L
Sbjct: 66  KVEHEAPTFELSNDRDLKFYL 86

BLAST of ClCG07G008400 vs. ExPASy TrEMBL
Match: A0A5C7IS68 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000759 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-05
Identity = 33/89 (37.08%), Postives = 44/89 (49.44%), Query Frame = 0

Query: 161 LEEKQLFIRYGGTWDEKG---QCYKGGLRKGIMVSTTLNYCESIATLCELSKVSSPDFKI 220
           +E  +L I Y G WD+       YKGG  KG+ V   L Y E +  +  L  V    FK 
Sbjct: 1   MEYARLIINYNGQWDKSTYGFYNYKGGSSKGMRVPKNLTYAELLERIHSLVNVDLSKFKF 60

Query: 221 ILRVKYKLDCECPLVCIMDDGDVKFLLSD 247
            L+  ++     PLV I DD DV+FLL +
Sbjct: 61  KLKSVFQTSYRSPLVDIKDDNDVEFLLCE 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154925.15.3e-0941.98uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038888098.12.6e-0837.76uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_022156834.14.2e-0634.52uncharacterized protein LOC111023667 [Momordica charantia][more]
XP_031742427.19.3e-0637.04uncharacterized protein LOC116404353 [Cucumis sativus][more]
XP_031745961.19.3e-0637.04uncharacterized protein LOC116406387 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DL082.6e-0941.98uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DUS42.0e-0634.52uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A2I7YUI44.5e-0637.04MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A6N0C3464.5e-0637.04MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A5C7IS686.5e-0537.08CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00075... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G008400.1ClCG07G008400.1mRNA