ClCG07G008120 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G008120
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	zf-RVT domain-containing protein
Location	CG_Chr07: 21610419 .. 21611350 (-)
RNA-Seq Expression	ClCG07G008120
Synteny	ClCG07G008120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGACAAGTGCGGGTGGCACTTTGATAAAGAAAGGAGAGTATACAGTCAAGAGTGGATACAAAAGTGAAATTTTAAAACGTTTTGCGATTAGAGGTACATGTTCATCCCAGCTAGCAGATTGGTGGAGTCGATCGTGGAAGCTCCGTATTCCTTCTGAAGTGGCAATTTTTGTGTCGAAGTCGTGGTTTGAATGTCTCCCCTCAAGGATCGGGCTGTGTAAGCATGGTATGGAAATTTGTCCATGGTGCTTGTGTAAATATAAGGAAGAGTTGGTAAGTCATGCTCTTTTTTGGTGTTCCAGAGTTAAACAAAATTGATATGTTGTTTTTCCAAGAAGGTGGCCAGATTTGTCCAAAATGATACAACGTCTTGATATTTGGAGGGTAGTAATTAAGAATTTTAATGATAGTGATTTGGCTACAGCTTGTATCACTACTTGGGCAATCTAGACTGACAAGAATAAGGTTCTCCATTTAATTTTGATCTTGTCATTGGAATTTCGTTGTGAATGGATTTTGAATTATGCAAAATGTGCGAGTAGTAGACATTTTGAAGAAAAGGCAGTTGTGAAAGGGTGTCAAAACAAGATAGTTCATTTGAGTAGTCAAATGAGTGTTATTCATGTTGATGATGCTTGTTCAGAAAATTCCAGGAGGTTTGGTTTTGGTGGGGTTTTGGGTAATGCATCTAGCTATATTGTGCATCCCTTAATGGGTACCGTGATTTTTTCTTTAGTGTGTTGGGTGTTGAAGCCATGGCTACTTATGAAGGCCTTCGTTTGGCTAGCAAAATGGATATTTCTTATATTATGATTATATCGAACTCGCTGACTATGATCCAGATTCTTCAACGAACTTCAGAGCCTCTTCTGGAAGTGGCTAATCAAGTAACTGATATTAAGAATAGTCTTGCCTTTGTTCCATAA

mRNA sequence

ATGGGGAAGACAAGTGCGGGTGGCACTTTGATAAAGAAAGGAGAGTATACAGTCAAGAGTGGATACAAAAGTGAAATTTTAAAACGTTTTGCGATTAGAGGTACATGTTCATCCCAGCTAGCAGATTGGTGGAGTCGATCGTGGAAGCTCCGTATTCCTTCTGAAGTGGCAATTTTTGTGTCGAAGTCGTGGTTTGAATGTCTCCCCTCAAGGATCGGGCTGTGTAAGCATGGTATGGAAATTTGTCCATGGTGCTTGTGTAAATATAAGGAAGAGTTGACTGACAAGAATAAGGTTCTCCATTTAATTTTGATCTTGTCATTGGAATTTCGTTGTGAATGGATTTTGAATTATGCAAAATGTGCGAGTAGTAGACATTTTGAAGAAAAGGCAGTTGTGAAAGGGTGTCAAAACAAGATAGTTCATTTGAGTAGTCAAATGAGTGTTATTCATGTTGATGATGCTTGTTCAGAAAATTCCAGGAGTGTGTTGGGTGTTGAAGCCATGGCTACTTATGAAGGCCTTCGTTTGGCTAGCAAAATGGATATTTCTTATATTATGATTATATCGAACTCGCTGACTATGATCCAGATTCTTCAACGAACTTCAGAGCCTCTTCTGGAAGTGGCTAATCAAGTAACTGATATTAAGAATAGTCTTGCCTTTGTTCCATAA

Coding sequence (CDS)

ATGGGGAAGACAAGTGCGGGTGGCACTTTGATAAAGAAAGGAGAGTATACAGTCAAGAGTGGATACAAAAGTGAAATTTTAAAACGTTTTGCGATTAGAGGTACATGTTCATCCCAGCTAGCAGATTGGTGGAGTCGATCGTGGAAGCTCCGTATTCCTTCTGAAGTGGCAATTTTTGTGTCGAAGTCGTGGTTTGAATGTCTCCCCTCAAGGATCGGGCTGTGTAAGCATGGTATGGAAATTTGTCCATGGTGCTTGTGTAAATATAAGGAAGAGTTGACTGACAAGAATAAGGTTCTCCATTTAATTTTGATCTTGTCATTGGAATTTCGTTGTGAATGGATTTTGAATTATGCAAAATGTGCGAGTAGTAGACATTTTGAAGAAAAGGCAGTTGTGAAAGGGTGTCAAAACAAGATAGTTCATTTGAGTAGTCAAATGAGTGTTATTCATGTTGATGATGCTTGTTCAGAAAATTCCAGGAGTGTGTTGGGTGTTGAAGCCATGGCTACTTATGAAGGCCTTCGTTTGGCTAGCAAAATGGATATTTCTTATATTATGATTATATCGAACTCGCTGACTATGATCCAGATTCTTCAACGAACTTCAGAGCCTCTTCTGGAAGTGGCTAATCAAGTAACTGATATTAAGAATAGTCTTGCCTTTGTTCCATAA

Protein sequence

MGKTSAGGTLIKKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSRIGLCKHGMEICPWCLCKYKEELTDKNKVLHLILILSLEFRCEWILNYAKCASSRHFEEKAVVKGCQNKIVHLSSQMSVIHVDDACSENSRSVLGVEAMATYEGLRLASKMDISYIMIISNSLTMIQILQRTSEPLLEVANQVTDIKNSLAFVP

Homology

[Close]

BLAST of ClCG07G008120 vs. NCBI nr
Match: TXG50764.1 (hypothetical protein EZV62_023288 [Acer yangbiense])

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-08
Identity = 44/158 (27.85%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 12  KKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSR 71
           KKG++++KS YK  +  +   + +CS  L  WW + W L +PS++ IF  K+  E LP+ 
Sbjct: 180 KKGKFSIKSAYKVALADQLNDQASCSYGLLTWWKKLWSLELPSKIRIFYWKACKEILPTM 239

Query: 72  IGLCKHGM---EICPWCLCKYKEELTDKNKVLHLILILSLEFRCEWILNYAKCASSRHFE 131
           + L K GM   ++CP+C     +E    +  L  +L LSL    + ++++   A    F 
Sbjct: 240 LLLYKRGMVVSDLCPFC----GDEPESVDHALWRVLWLSLLGNKDVLMHFLVTAWLLWFR 299

Query: 132 EKAVVKGCQNKIVHLSSQMSVIHVDDACSENSRSVLGV 167
                   +N+++H       + V+D+C + +  +L V
Sbjct: 300 --------RNRLLH----GGTVPVNDSCWDQASEMLKV 321

[Close]

BLAST of ClCG07G008120 vs. NCBI nr
Match: KAF7829689.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-07
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 9   TLIKKGEYTVKSGYKS-EILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFEC 68
           +L   G YTVKSGYK    +K   I  +   Q  D W R WKL++P+++  F+ ++  E 
Sbjct: 155 SLTPNGHYTVKSGYKELRKIKLPNIHDSFFHQFTDVWKRVWKLKLPAKIKFFIWRACREI 214

Query: 69  LPSRIGLCKHGMEICPWC-LCKYKEELTDKNKVLH 102
           LP    L K G+++  WC +CK +EE +  + VLH
Sbjct: 215 LPVCSNLIKKGVDVDMWCPVCKEEEE-SVSHAVLH 248

[Close]

BLAST of ClCG07G008120 vs. NCBI nr
Match: TXG65555.1 (hypothetical protein EZV62_006830 [Acer yangbiense])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-06
Identity = 27/77 (35.06%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 12  KKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSR 71
           KKG+++VKS YK  +  + + + +CS     WW + W L +PS++  F  K+    LP++
Sbjct: 49  KKGKFSVKSAYKVALADQLSDQASCSYGPLAWWKKLWSLELPSKIRFFCWKANKVILPTK 108

Query: 72  IGLCKHGM---EICPWC 86
           + LCK G+   ++CP+C
Sbjct: 109 LLLCKKGLVVSDLCPFC 125

[Close]

BLAST of ClCG07G008120 vs. NCBI nr
Match: XP_042974792.1 (uncharacterized protein LOC122306430 [Carya illinoinensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-05
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 12  KKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSR 71
           K G YTV+S Y  EI +R   RG  S++  + W + W L IP  V +FV K+   CLP++
Sbjct: 846 KNGLYTVRSAYHVEINRRRRERGEMSNKSGEVWRKVWLLNIPGVVKVFVWKTMLNCLPTK 905

Query: 72  IGLCKHGM---EICPWCL 87
           + L K  +     CP CL
Sbjct: 906 MNLMKRSVVKEATCPVCL 923

[Close]

BLAST of ClCG07G008120 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-05
Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 14   GEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSRIG 73
            G Y VKSGY   +        TCS+ +  WWS  WKL++P +V IFV K +   LP    
Sbjct: 1022 GVYNVKSGYHFAVSLAEQDDSTCSNSIEHWWSNFWKLKLPPKVRIFVWKVFHTSLPVAAE 1081

Query: 74   LCKHGMEICPWC-LCKYKEE 93
            L +  +   P+C +C   EE
Sbjct: 1082 LYRRHIAFSPYCTICNSCEE 1101

[Close]

BLAST of ClCG07G008120 vs. ExPASy TrEMBL
Match: A0A5C7H1A9 (zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_023288 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 44/158 (27.85%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 12  KKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSR 71
           KKG++++KS YK  +  +   + +CS  L  WW + W L +PS++ IF  K+  E LP+ 
Sbjct: 180 KKGKFSIKSAYKVALADQLNDQASCSYGLLTWWKKLWSLELPSKIRIFYWKACKEILPTM 239

Query: 72  IGLCKHGM---EICPWCLCKYKEELTDKNKVLHLILILSLEFRCEWILNYAKCASSRHFE 131
           + L K GM   ++CP+C     +E    +  L  +L LSL    + ++++   A    F 
Sbjct: 240 LLLYKRGMVVSDLCPFC----GDEPESVDHALWRVLWLSLLGNKDVLMHFLVTAWLLWFR 299

Query: 132 EKAVVKGCQNKIVHLSSQMSVIHVDDACSENSRSVLGV 167
                   +N+++H       + V+D+C + +  +L V
Sbjct: 300 --------RNRLLH----GGTVPVNDSCWDQASEMLKV 321

[Close]

BLAST of ClCG07G008120 vs. ExPASy TrEMBL
Match: A0A5C7I8M1 (zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_006830 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.6e-07
Identity = 27/77 (35.06%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 12  KKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSR 71
           KKG+++VKS YK  +  + + + +CS     WW + W L +PS++  F  K+    LP++
Sbjct: 49  KKGKFSVKSAYKVALADQLSDQASCSYGPLAWWKKLWSLELPSKIRFFCWKANKVILPTK 108

Query: 72  IGLCKHGM---EICPWC 86
           + LCK G+   ++CP+C
Sbjct: 109 LLLCKKGLVVSDLCPFC 125

[Close]

BLAST of ClCG07G008120 vs. ExPASy TrEMBL
Match: A0A5C7HBR6 (zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018852 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-05
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 12  KKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSR 71
           K G YT+KSGYK           +C+  +  WW   W+LRIP ++ IF+ K++   L + 
Sbjct: 67  KNGVYTIKSGYKVGKALGCQTSSSCNIGVEWWWKCLWRLRIPVKIRIFIWKAYHTWLSTL 126

Query: 72  IGLCKHGMEICPWC-LCKYKEELT 95
           + L KHG+     C +C  K E T
Sbjct: 127 VNLAKHGVPTETRCGVCSKKSETT 150

[Close]

BLAST of ClCG07G008120 vs. ExPASy TrEMBL
Match: A0A5C7IC57 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007694 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 27/85 (31.76%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 12  KKGEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSR 71
           K G Y+V+SGY+           +  +    WW   W+L++ S++ +F+ K+W   +P+R
Sbjct: 705 KSGNYSVRSGYRLACNSLEIPSCSGLNLFESWWKFFWRLKLLSKIKLFIWKAWNNWIPTR 764

Query: 72  IGLCKHGMEI---CPWCLCKYKEEL 94
           + L  HGM +   CP CL K K  +
Sbjct: 765 VNLALHGMRLEVTCPICLNKAKSTM 789

[Close]

BLAST of ClCG07G008120 vs. ExPASy TrEMBL
Match: A0A803QJN9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-05
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 14  GEYTVKSGYKSEILKRFAIRGTCSSQLADWWSRSWKLRIPSEVAIFVSKSWFECLPSRIG 73
           G YTVKSGY+  +    +     S+ L  WW++ WKL++PS++ IFV K +   LP    
Sbjct: 805 GCYTVKSGYQFAVSLADSHETNTSTTLDSWWTKFWKLKLPSKIRIFVWKVFHNALPVASE 864

Query: 74  LCKHGMEICPWC-LCKYKEE 93
           L +  +   P+C LCK  +E
Sbjct: 865 LHRKHIAETPFCPLCKVHKE 884

The following BLAST results are available for this feature:

BLAST of ClCG07G008120 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG50764.1	6.2e-08	27.85	hypothetical protein EZV62_023288 [Acer yangbiense]	[more]
KAF7829689.1	6.8e-07	37.89	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
TXG65555.1	2.0e-06	35.06	hypothetical protein EZV62_006830 [Acer yangbiense]	[more]
XP_042974792.1	1.3e-05	39.74	uncharacterized protein LOC122306430 [Carya illinoinensis]	[more]
XP_030508852.1	3.7e-05	37.50	uncharacterized protein LOC115723496 [Cannabis sativa]	[more]

BLAST of ClCG07G008120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G008120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7H1A9	3.0e-08	27.85	zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_023288 P...	[more]
A0A5C7I8M1	9.6e-07	35.06	zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_006830 P...	[more]
A0A5C7HBR6	1.8e-05	35.71	zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018852 P...	[more]
A0A5C7IC57	2.4e-05	31.76	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007694 PE=4 SV=1	[more]
A0A803QJN9	4.0e-05	37.50	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of ClCG07G008120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G008120.1	ClCG07G008120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity