ClCG07G006760 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G006760
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase subunit beta
LocationCG_Chr07: 13250963 .. 13251565 (+)
RNA-Seq ExpressionClCG07G006760
SyntenyClCG07G006760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTATTTGCAAAATGGAAGACCTGTTGATATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGCGGGGAGTTTGCTAGATAGACATTATCGAATAGTACCTTTTGATGAGAGATATGAACAAGAGGCTTCTAGAAAACTAGTCTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGAACCCGAGTATCTGCAAAAAAGCAGAATATTTTATGGAAGAACGAGAAATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAATCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGTTTGGGCTAAAACTCCTCTGCTGCCTTTTCTATTCTTTCTTCCTCCCTCATTTCCTCTTTGAATTCTAATGTAGCTTGGTCAATTTGACGATTAGGAGGCATATGCATCGAAGCTCCTTCTTTTTCCTTGTGAGGCTTTTTCTTTGTGA

mRNA sequence

ATGCCTTATTTGCAAAATGGAAGACCTGTTGATATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGCGGGGAGTTTGCTAGATAGACATTATCGAATAGTACCTTTTGATGAGAGATATGAACAAGAGGCTTCTAGAAAACTAGTCTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGAACCCGAGTATCTGCAAAAAAGCAGAATATTTTATGGAAGAACGAGAAATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAATCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGAGGCATATGCATCGAAGCTCCTTCTTTTTCCTTGTGAGGCTTTTTCTTTGTGA

Coding sequence (CDS)

ATGCCTTATTTGCAAAATGGAAGACCTGTTGATATGGTTTTCAATCCATTAGGAGTCCCCTCACGAATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGCGGGGAGTTTGCTAGATAGACATTATCGAATAGTACCTTTTGATGAGAGATATGAACAAGAGGCTTCTAGAAAACTAGTCTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGAACCCGAGTATCTGCAAAAAAGCAGAATATTTTATGGAAGAACGAGAAATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAATCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGAGGCATATGCATCGAAGCTCCTTCTTTTTCCTTGTGAGGCTTTTTCTTTGTGA

Protein sequence

MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQSLRGRAKQGGQRVGEMEEAYASKLLLFPCEAFSL
Homology
BLAST of ClCG07G006760 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. NCBI nr
Match: YP_009753166.1 (RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase subunit beta [Trichosanthes truncata])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. NCBI nr
Match: YP_009752827.1 (RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase subunit beta [Baijiania yunnanensis])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. NCBI nr
Match: AHM88854.1 (RNA polymerase beta subunit, partial [Lagenaria siceraria])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 827 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 886

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 887 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 946

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 947 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 977

BLAST of ClCG07G006760 vs. NCBI nr
Match: QJR52948.1 (RNA polymerase beta subunit [Herpetospermum pedunculosum])

HSP 1 Score: 297.7 bits (761), Expect = 6.1e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 8.0e-80
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. ExPASy Swiss-Prot
Match: A4QJA7 (DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium OX=434059 GN=rpoB PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.7e-77
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRK
Sbjct: 842 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 901

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTA+PWVFEPEY  KSRIF GRT +PFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 902 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 961

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGR+KQGGQRVGEME
Sbjct: 962 HGRSSGHYALVTQQPLRGRSKQGGQRVGEME 992

BLAST of ClCG07G006760 vs. ExPASy Swiss-Prot
Match: A4QJJ1 (DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflorum OX=72657 GN=rpoB PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.7e-77
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRK
Sbjct: 842 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 901

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTA+PWVFEPEY  KSRIF GRT +PFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 902 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 961

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGR+KQGGQRVGEME
Sbjct: 962 HGRSSGHYALVTQQPLRGRSKQGGQRVGEME 992

BLAST of ClCG07G006760 vs. ExPASy Swiss-Prot
Match: A4QK10 (DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta OX=78191 GN=rpoB PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.7e-77
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRK
Sbjct: 841 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 900

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTA+PWVFEPEY  KSRIF GRT +PFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 901 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 960

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGR+KQGGQRVGEME
Sbjct: 961 HGRSSGHYALVTQQPLRGRSKQGGQRVGEME 991

BLAST of ClCG07G006760 vs. ExPASy Swiss-Prot
Match: P50546 (DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB PE=3 SV=4)

HSP 1 Score: 290.0 bits (741), Expect = 1.7e-77
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRK
Sbjct: 841 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 900

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTA+PWVFEPEY  KSRIF GRT +PFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 901 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 960

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGR+KQGGQRVGEME
Sbjct: 961 HGRSSGHYALVTQQPLRGRSKQGGQRVGEME 991

BLAST of ClCG07G006760 vs. ExPASy TrEMBL
Match: A0A218KG28 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoB PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. ExPASy TrEMBL
Match: A0A6H0ETN6 (DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=rpoB PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. ExPASy TrEMBL
Match: A0A1X9Q1B9 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. ExPASy TrEMBL
Match: A0A249RZI0 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoB PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. ExPASy TrEMBL
Match: A0A1S4ETZ9 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK
Sbjct: 839 MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 898

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTASPWVFEPEY  KSRIF GRT NPFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 899 LVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKI 958

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGRAKQGGQRVGEME
Sbjct: 959 HGRSSGHYALVTQQPLRGRAKQGGQRVGEME 989

BLAST of ClCG07G006760 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-78
Identity = 141/151 (93.38%), Postives = 145/151 (96.03%), Query Frame = 0

Query: 1   MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
           MPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRK
Sbjct: 841 MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 900

Query: 61  LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
           LVFSELYEASKQTA+PWVFEPEY  KSRIF GRT +PFEQPVIIGKPYILKLIHQVDDKI
Sbjct: 901 LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI 960

Query: 121 HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
           HGRSSGHYALVTQQ LRGR+KQGGQRVGEME
Sbjct: 961 HGRSSGHYALVTQQPLRGRSKQGGQRVGEME 991

BLAST of ClCG07G006760 vs. TAIR 10
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 85.5 bits (210), Expect = 4.4e-17
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 0

Query: 1    MPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRK 60
            MP+   G   D++ NP  +PSRM +GQ+ EC +G   + + +     PF +      S+ 
Sbjct: 960  MPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK- 1019

Query: 61   LVFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKI 120
                 L++   Q      FE       R++ G T  P    + +G  Y  +L H VDDKI
Sbjct: 1020 ----ALHKCGYQMRG---FE-------RMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKI 1079

Query: 121  HGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
            H R  G   ++T+Q   GR++ GG R GEME
Sbjct: 1080 HSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1095

BLAST of ClCG07G006760 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 82.0 bits (201), Expect = 4.9e-16
Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 0

Query: 2    PYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKL 61
            P+ + G   D++ NP G PSRM VG++ E     AG    R +    F ER       + 
Sbjct: 936  PFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYGSAFGERSGHADKVET 995

Query: 62   VFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKIH 121
            + + L E              Y  K  ++ G +  P E  + +G  Y  KL H V DK+H
Sbjct: 996  ISATLVEKGF----------SYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMH 1055

Query: 122  GRSSGHYALVTQQSLRGRAKQGGQRVGEMEE----AYASKLLLF 162
             R SG   ++T+Q   G++K GG RVGEME     AY + +L++
Sbjct: 1056 ARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIY 1089

BLAST of ClCG07G006760 vs. TAIR 10
Match: AT1G29940.1 (nuclear RNA polymerase A2 )

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 41/150 (27.33%), Postives = 64/150 (42.67%), Query Frame = 0

Query: 7    GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERY-----EQEASRKL 66
            G   D++ NP   PSRM +  + E      GSL  +     PF +       E+E+   L
Sbjct: 925  GMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSL 984

Query: 67   VFSELYEASKQTASPWVFEPEYLQKSRIFYGRTRNPFEQPVIIGKPYILKLIHQVDDKIH 126
            +  +L    K+          +     ++ G      +  + +G  Y  +L H V DK  
Sbjct: 985  LVDDLGSMLKEKGF------NHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQ 1044

Query: 127  GRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
             RS+G    +T Q ++GR + GG R GEME
Sbjct: 1045 VRSTGQVDQLTHQPIKGRKRGGGIRFGEME 1068

BLAST of ClCG07G006760 vs. TAIR 10
Match: AT3G23780.1 (nuclear RNA polymerase D2A )

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-08
Identity = 41/161 (25.47%), Postives = 73/161 (45.34%), Query Frame = 0

Query: 2    PYLQNGRPVDMVFNPLGVPSRMNVGQIFECSL--GLAGSLLDRHYRIVPFDERYEQEASR 61
            P+   G   D+V NP   PSR   GQ+ E +L  G+A  +               Q+   
Sbjct: 934  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPI---------------QKEGS 993

Query: 62   KLVFSELYEASKQTASPWVFE-PEYLQKS--------RIFYGRTRNPFEQPVIIGKPYIL 121
               +++L   +   ++P V E  E L ++        R++ GR+       + +G  +  
Sbjct: 994  SAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQ 1053

Query: 122  KLIHQVDDKIHGRSSGHYALVTQQSLRGRAKQGGQRVGEME 152
            +L+H  +DK+  R++G    +T+Q +  R + GG + GEME
Sbjct: 1054 RLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1079

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AHM89856.16.1e-7796.69RNA polymerase beta subunit [Lagenaria siceraria][more]
YP_009753166.16.1e-7796.69RNA polymerase subunit beta [Trichosanthes truncata] >QIT06238.1 RNA polymerase ... [more]
YP_009752827.16.1e-7796.69RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase s... [more]
AHM88854.16.1e-7796.69RNA polymerase beta subunit, partial [Lagenaria siceraria][more]
QJR52948.16.1e-7796.69RNA polymerase beta subunit [Herpetospermum pedunculosum][more]
Match NameE-valueIdentityDescription
Q4VZP18.0e-8096.69DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
A4QJA71.7e-7793.38DNA-directed RNA polymerase subunit beta OS=Aethionema cordifolium OX=434059 GN=... [more]
A4QJJ11.7e-7793.38DNA-directed RNA polymerase subunit beta OS=Aethionema grandiflorum OX=72657 GN=... [more]
A4QK101.7e-7793.38DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta OX=78191 GN=rpoB PE=3... [more]
P505461.7e-7793.38DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB... [more]
Match NameE-valueIdentityDescription
A0A218KG283.0e-7796.69DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=3... [more]
A0A6H0ETN63.0e-7796.69DNA-directed RNA polymerase subunit beta OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A1X9Q1B93.0e-7796.69DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
A0A249RZI03.0e-7796.69DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3... [more]
A0A1S4ETZ93.0e-7796.69DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV... [more]
Match NameE-valueIdentityDescription
ATCG00190.11.2e-7893.38RNA polymerase subunit beta [more]
AT4G21710.14.4e-1732.45DNA-directed RNA polymerase family protein [more]
AT5G45140.14.9e-1632.32nuclear RNA polymerase C2 [more]
AT1G29940.12.4e-1027.33nuclear RNA polymerase A2 [more]
AT3G23780.12.9e-0825.47nuclear RNA polymerase D2A [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 1..149
e-value: 2.6E-49
score: 169.7
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 1..141
e-value: 6.1E-39
score: 134.2
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..151
NoneNo IPR availablePANTHERPTHR20856:SF30DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 1..151
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G006760.1ClCG07G006760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding