ClCG07G006140 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G006140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrotrans_gag domain-containing protein
Location	CG_Chr07: 10340986 .. 10341916 (-)
RNA-Seq Expression	ClCG07G006140
Synteny	ClCG07G006140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATATTATATGATGGTTTGACCGAGGCTTCTCAGACCGCTGCAAATGCTGCCGCAGCGGGAGGACTACTGGATAAAACTTATACTGAGGCCAAGAAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGCAGGCAAAACAATGCGACGGGAGCACCAGAGCATAATAGTGTTGTTGCGTTACAAGCTCAAGTCACCACCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGTGAACGCCGCAGGATGCGTTGGATGCAGGGAGCCGCATGCATATGAGGTATGTCCACAGAACCCTCAATCTGTATGTTTTATACGCAATAACTCCTATTCCAACACCTACAACCCTGGCTGGAGGAATCATCCAAATTTCTCATGGGGTGGTAACCGCCAGCCTGATCAGCAAGGTGCGCCCACGCACGAAAGGGGTGGATCATCTGGATTCCTCCATGGGCATTAGAGGCAAATTTCACACCAATCAGCGCCTAGTCCATCATCATCAATGGAAGCTCTTCTGAAGGAATATATACAGAAGAATGACGCCTTGTTGCAAACCCAGGCGTCATCCATCCGAAATTTAGAGGTTCAGATTGGCCAGATTGCTAGAGAATTTAAGACGCGGCAGAAAGGTTCTCTTCCGAGCAACACCAAAGCCCCACGCGGTACGGGCAGTTCAGGTAAAGAACAATGTCAAGCTGTGACATTGCGAAGTGGAAGAACTATGAATGAACTTCCCCGCCCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTAACCCATCAACGCAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGACG

mRNA sequence

ATGGAGATATTATATGATGGTTTGACCGAGGCTTCTCAGACCGCTGCAAATGCTGCCGCAGCGGGAGGACTACTGGATAAAACTTATACTGAGGCCAAGAAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGCAGGCAAAACAATGCGACGGGAGCACCAGAGCATAATAGTGTTGTTGCGTTACAAGCTCAAGTCACCACCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGTGAACGCCGCAGGATGCAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTAACCCATCAACGCAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGACG

Coding sequence (CDS)

ATGGAGATATTATATGATGGTTTGACCGAGGCTTCTCAGACCGCTGCAAATGCTGCCGCAGCGGGAGGACTACTGGATAAAACTTATACTGAGGCCAAGAAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGATCTGGCCGCAGGCAAAACAATGCGACGGGAGCACCAGAGCATAATAGTGTTGTTGCGTTACAAGCTCAAGTCACCACCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAGGAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGTGAACGCCGCAGGATGCAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTAACCCATCAACGCAACAAAAACAAGCTGACATGCAAAGAAGTTTATCAGGGAAAGACG

Protein sequence

MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGGGGQVNAVNQVNAAGCRTLNQQFIFPIPQLILTHQRNKNKLTCKEVYQGKT

Homology

[Close]

BLAST of ClCG07G006140 vs. NCBI nr
Match: XP_038896708.1 (uncharacterized protein LOC120084968 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNN 60
           ME  Y+GL  ++Q  ANA+AAGG +DKTYTEAK ILDRISRN +DWED GY   G  +  
Sbjct: 103 METFYNGLDRSTQVVANASAAGGFMDKTYTEAKVILDRISRNTDDWEDDGYRGRGPERRK 162

Query: 61  ATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGGQVNAVNQV 107
           A  A    N++  L AQ+  +T+LL  MA+NQ ++  G  Q NA+ QV
Sbjct: 163 AESAIVPANTMTTLAAQMAAVTSLLHMMAINQGSLSQGAAQANALAQV 210

[Close]

BLAST of ClCG07G006140 vs. NCBI nr
Match: XP_038896595.1 (uncharacterized protein LOC120084850 [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-15
Identity = 59/135 (43.70%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNN 60
           ME  Y+GL  + Q  A+A+ A GL+DKTYTEAK ILDRISRN ++W  +GY   G  Q  
Sbjct: 126 METCYNGLDRSMQVVADASTAEGLIDKTYTEAKIILDRISRNTDEWFYNGYEERGSEQRR 185

Query: 61  ATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGGQVNAVNQVNAAGC------- 120
             GA    +++  L  Q+TTMT LLQTMA+ Q ++     Q NA+  V A  C       
Sbjct: 186 VEGAIVPIDTMKTLVDQMTTMTLLLQTMAIQQGHLSQSSAQANALTHVAAVNCVQCGEGH 245

Query: 121 ----RTLNQQFIFPI 123
                 LNQQF++ I
Sbjct: 246 SVEVCPLNQQFVYSI 260

[Close]

BLAST of ClCG07G006140 vs. NCBI nr
Match: XP_038874978.1 (putative uncharacterized protein DDB_G0279653 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-14
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRRQN 60
           ME  Y+ L  ++Q  A+A+A GG +DKTYTEAK ILDRISRN +DW D GY  R  +R+ 
Sbjct: 53  METFYNSLNRSTQAVADASAVGGFMDKTYTEAKVILDRISRNTDDWVDDGYGGRDPKRRR 112

Query: 61  NATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIG-GGGQVNAVNQVNAAGC 112
           N       +++  L AQ+  +T+LLQTMA+NQ  +     Q NA  Q+ A  C
Sbjct: 113 NDNAIVPADTMTTLAAQMAAVTSLLQTMAINQGALSQSSAQPNAPVQLAAINC 165

[Close]

BLAST of ClCG07G006140 vs. NCBI nr
Match: XP_038880418.1 (uncharacterized protein LOC120072068 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-14
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNN 60
           ME  Y+GL  ++Q  A+A+ AGGL+ KTYTEAK ILDR+SRN ++W D+GY      Q  
Sbjct: 130 METFYNGLDRSTQAVADASTAGGLMYKTYTEAKIILDRVSRNTDEWIDNGYEERASEQRR 189

Query: 61  ATGA-PEHNSVVALQAQVTTMTNLLQTMALNQSNIGGG-GQVNAVNQVNAAGC------- 120
           A  A    N++ +L AQ+ T+T+LLQT+ + Q ++     Q NA+ QV A  C       
Sbjct: 190 AESAIVPANTMNSLAAQMATVTSLLQTIVIQQGHLSQSLAQANALMQVAAISCVQYGEGH 249

Query: 121 ----RTLNQQFIFPI 123
                 LNQQ ++ I
Sbjct: 250 SVEVCLLNQQSVYSI 264

[Close]

BLAST of ClCG07G006140 vs. NCBI nr
Match: XP_038889341.1 (uncharacterized protein LOC120079252 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-13
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRRQN 60
           ME  Y+GL  A+Q   +A+A GG +DKTYTE+K ILDRISRN +DW D+ Y  R   R+ 
Sbjct: 81  METFYNGLNSATQAVVDASATGGFMDKTYTESKVILDRISRNMDDWIDYRYGGRGAERRK 140

Query: 61  NATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGG-GGQVNAVNQVNAAGC 112
             T      ++  L AQ+ T+T++LQ+MA+NQ  I     Q  A+  V   GC
Sbjct: 141 AETAIVPVETMTTLAAQMATVTSILQSMAINQGAIASQSAQPVALAHVAVIGC 193

[Close]

BLAST of ClCG07G006140 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNN 60
           ME+ Y GL++ +    N    GG+L  +Y + K  LD +S N ++W+D G+    R +  
Sbjct: 36  MEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQEWDDIGF--GSRHRGR 95

Query: 61  ATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNIGGGGQVNAVNQVN 108
                + + VV LQ Q+  M NLLQ+M L+Q N      ++AV QVN
Sbjct: 96  TKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVN-AANNYIHAVKQVN 139

[Close]

BLAST of ClCG07G006140 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNN 60
           ME  Y+GL  A++   +A+A G +L KTY EA +IL+RI+ N+  W D   S  GR+   
Sbjct: 213 METFYNGLNIATKQVVDASANGAILSKTYNEAYEILERIASNNCQWAD-VRSNPGRK--- 272

Query: 61  ATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI--GGGGQVNAVNQVNAAGCRTLNQQF 120
             G  E +++ ++ AQ+ ++TN+LQ +AL Q ++       V  +NQ  A  C    ++ 
Sbjct: 273 TRGVLEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTVAVINQTAAESCVYCGEEH 330

[Close]

BLAST of ClCG07G006140 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNN 60
           ME  Y+GL   ++   +A+A G +L KTY EA +IL+RI+ N+  W D   S  GR+   
Sbjct: 242 METFYNGLNIVTKQVVDASANGAILSKTYNEAYEILERIASNNCQWAD-VRSNPGRK--- 301

Query: 61  ATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI--GGGGQVNAVNQVNAAGCRTLNQQF 120
             G  E +++ ++ AQ+ ++TN+LQ +AL Q ++         A+NQ  A  C    ++ 
Sbjct: 302 TRGVLEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTAAAINQTAAESCVYCGEEH 359

[Close]

BLAST of ClCG07G006140 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGY-SRSGRR-- 60
           ME  Y GL++ +  +AN    GG+L  +Y + K +LD ++ N ++W D  + SR+  R  
Sbjct: 36  MEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGT 95

Query: 61  ---QNNATGAPEHNSVVALQAQVTTMTNLLQTMALNQSNI--GGGGQVNAVNQVNAAGCR 120
              +       + + +VALQ QV  M N+LQ+MAL Q N+       V  VN++   GCR
Sbjct: 96  KGNRGRIEDGIDMSIMVALQGQVIEM-NILQSMALLQVNVVRSSVQMVQQVNEMGCVGCR 155

Query: 121 TLNQQFIFPIPQLILTHQRN 133
             +     P+   I+ + +N
Sbjct: 156 APHNTNACPLNTEIVAYLKN 174

[Close]

BLAST of ClCG07G006140 vs. ExPASy TrEMBL
Match: W9RRR5 (Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_012321 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.7e-05
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1   MEILYDGLTEASQTAANAAAAGGLLDKTYTEAKKILDRISRNHEDWEDHGYSRSGRRQNN 60
           ME  Y+GL E ++   +AAA G LL K+Y E  +IL+R++ NH  W     S        
Sbjct: 58  METFYNGLNEQTRVMVDAAANGALLAKSYNEGYEILERMATNHYQW-----SPERLPTRK 117

Query: 61  ATGAPEHNSVVALQAQVTTMTNLLQTM 88
             G  E +++ AL AQV+ +TN+ +TM
Sbjct: 118 TPGVLEVDAITALSAQVSNLTNMFKTM 139

The following BLAST results are available for this feature:

BLAST of ClCG07G006140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896708.1	2.4e-16	50.93	uncharacterized protein LOC120084968 [Benincasa hispida]	[more]
XP_038896595.1	9.9e-15	43.70	uncharacterized protein LOC120084850 [Benincasa hispida]	[more]
XP_038874978.1	2.2e-14	46.02	putative uncharacterized protein DDB_G0279653 [Benincasa hispida]	[more]
XP_038880418.1	4.9e-14	41.48	uncharacterized protein LOC120072068 [Benincasa hispida]	[more]
XP_038889341.1	5.4e-13	44.25	uncharacterized protein LOC120079252 [Benincasa hispida]	[more]

BLAST of ClCG07G006140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG07G006140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6F9	4.8e-07	35.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1	[more]
A0A6J1EEI2	2.4e-06	34.43	uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333...	[more]
A0A6J1EQ90	6.9e-06	33.61	uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A5D3CC26	1.2e-05	31.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
W9RRR5	7.7e-05	37.93	Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_01...	[more]

BLAST of ClCG07G006140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G006140.1	ClCG07G006140.1	mRNA