ClCG07G004200 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCTTAAAGAAGCACCAGAATTGTCTTTTCTTATTGGCCGATTCTTTCACTTTCCCTTCTTCTCATAAATCCTCTTTCCCCTCCCCTACTCTCGTCCCCACGCGCGTCCTCTACACGCTCCCACTTGTCCTTAAAACTCCCTGCCCTCTCCTCGAGCGTCCCTCCACCTTCTTCCTCCTCCCCCGCCGCCGCCGCCTCCCGGAGCCGTTTTCTACACACGCATACACACAGGAAAACTCTGGCTTAGGAGTTTTCCTATCCATCCCAGCTTTCTGTTCATTTTGGTCGTCGGAAGAGGCGGTTCTGATCAGCTACCCCATGCCTGAGTTGACTCAGCCGGAGGTCTACTCGCCCAGGACTCTGCAGGTGTGGAAGACGCTGTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTCAGATCCTCAGAGCTTTTGGACACCTTCGCCTTCTTTCTTCTGATTCTTCTTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAACTTCCTGACCATGAGTTGCTCGCCGCTTCCGCCGTTGATATCGCTTCTGTTGAAGATGAGGAGGAGTCCGATGGGCTTATGGAGAAACTGACGGTATTCTCAATGTTCTTGTTAATTTCTCGTTATGAATGTGGTTTTCCTTCCCGAAATTGTTTGCTGGAAACCGGGGGTTCTGCGCAGTGTTTGTTTTTGGATTCAATTTGTGCCCGATTTTTCTTGAAACTGTGGTTTGCTTCTGCTGTTTGGGTTTCCTCAATTTTGTGATTATTGGGCCATGCATTCTCCTCCATATATGTGTTTATGACGGTGATTCAATATATATTTAAAGTTTGATTTGTCTTTCTTAGAGTTTGGGAGTAGTGTTTAACAGGCTTGGCATTTACCTGTGTGTGAAGATTGACTGATACATTTTGGTGAAGTAGGGATGTGTATTTTCTTGATGAAAATGGGGACAGGAAAACGTCAACTTCATTGCCTATGGTTCATTTAGTAGATGAAAGAATTTAGCTCTGTAACTTTCTGTAAATGCTTAACCCAATTTGAACAAACGACCTTCTTTCATTTTAGATTACCCAACGTTATGATTGATGATTTGAACTTCCATTGTTAGAAATTTGTGGAGATGCTTTGTGAAGTTAAAATGGCTTCAAAAGTTACTCTGAGTTCCATAAAGCCACATGGAGGATTGTGTTTTCTTTCTTCTTGCTTTATTCTCTTTTGGGTGTGGGGGGTTTACATTTTTTTCCTTGAATTTATCTTTCTTTTGTTCCCATTGCAACTTCCTTTATAGATTCCATATCTGACATTGAACATTTACAGATAGTTCTCGACTTGGATGAAACTCTCATATGTGCATATGAGTCGTCTACTTTGCCTGCTGTTATTCGCAATCAAGCAATAGAAGCTGGACTGAAGTCTTTTGAACTGGAATGCTTTTCTTCAGACAAGGTAGTTTCCTTTTCAGTAACCTTGTATTGTTTCGTTTTTCTGAGTTTTAGTTTAACTATCTTGCCCGGATATGCTGCTATTTGAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCAGGTCTGCACGATTTCTTAAACCATCTAGGTGGATTCGCAGATCTTGTACTCTTCACAGCTGGTCTTGAAGGTTTGTAGACTTTACTATCTATTAGTTTACTAAATAATGAACCTTTATTACCCATGAATGAAAAAAGAAATTGAATCTGAAGGATGTCATCTATGAATGCAGGGTATGCAAGACCTCTTGTTGACAGGATAGATGAAGAAAATCGATTTAGTCTTAGACTGTATAGGCCTTCAACAATTAGAACGTAAGTACTGTTTCTGCTATTTTCTTCTTTTTATTTGGTCAGCATAACAAATATTTGCTATTTTTACTTCTTATTTGGGTCCGGCAGAGTATCTGTCAATAAAGATATAATATTAATAGAGCTATCAAATCTCAAGGAATCGAACTTGCCCTTTCCAGAAACAAGTTTGAATCGTTCAGGAGTTTGAGTAAAACTTGTTAAACTACTTGTTTTTTTATCCTAAAGTTCATTATTTATTGATGCTGCAAGCTATGATTAAGGTGCATAAATGTGTTTTAGTTAATTAGTTGAAGATCGCGAGATTAGTTGGAAACTGAGTACATTTTTCTACACATTTTTAAGTACATTTTTGTCTATGATTGATTAAAATAACCTTCGTCATATTCATAATGACTTACAAACATGACTTTGATCATTCATATCAATTTATTGTTTGATTTTACACTTTAAACATGTTTTTTTACCATCAAAATTGATTTTGAATGGGTAAATGAGCATAGCTCATTTGACATTTGGATGTGTTAGTGACCAAGGAGTATGTGGTTTGAATCCTTTGTCCTCTATTTTGCTAAAAAAAAAATGATTTTGTGTGATTAAGAACATGTTTCAGGGTGATTTTGGATATTGCAAAAGTGAGTTTATTCATTTCAAAATCACTCCCAAACTTGCTTGAATTCTACTTAGTCCATGTATTAGTTTTCTAAGATCACGTTGAATGTTTTAAGTGTCATAAGTTTGTTCTGGGTAATAATGTTACACAAACCTACTCATTTCTGGAAAGGATTTCAAATATTGGAAGGATGAAACTTCACAAACCTTCTACAAAAGTTCAAACTAAAGTTAATTGTATACTCCTTGTAAAACCTGTGTGGTTCTGCTATATAATCTACAGGGAATACCGAGATCATGTGAAGGATCTCTCCTGCCTATCAAAGGATCTAAGAAGAATAGTCATCGTTGACAATAATCCTTTCAGTTTTTTACTGCAACCTCTAAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGATTCACAGGTGGGAAATCTTGAAAATGCTGGATCTTCCAGTAAATAATAATTACATCTTGTGACAAATAATTCAATTTGTGACCGACTTTTTCGTGTTGCCTGTTCTTCATTTACAGCTCCTAGATGTCATTCTTCCACTTCTAAAGCACCTCTCGCTGCAGAACGACGTCAGGCCGGTGCTGTACGAAAGATTCCATATGCCTGAATGGTTTCAGAAGCATGGAATTCAAACCTAAGTTAAATGAAGATTTGTGCAAGAAAAAAGGTACATTCTTCTCTGCACCATGTCAACAGTTAACACAATATCTTGTCCAATGGGCAGCCGCTTCATGAGTCAGATGTTGATTCTTGAACTTTTGTATAGCTTCATGTTGTACATCATGGATATGATCCCAAATAGTTTCATCCAATTGTTTGAAAATTATATGTAGTATTAAAATTGTAATTTTGTAGGAATTTTCTGATTTGTAATTTATTCATGCTATGTTGTTGGATGTGTTTTAGGAATTTTCTTCAACTTTTTACCAATAAATAGCAGAAGTCTCTCCCTGTTCCCTTTT ATGATCTTAAAGAAGCACCAGAATTGTCTTTTCTTATTGGCCGATTCTTTCACTTTCCCTTCTTCTCATAAATCCTCTTTCCCCTCCCCTACTCTCGTCCCCACGCGCGTCCTCTACACGCTCCCACTTGTCCTTAAAACTCCCTGCCCTCTCCTCGAGCGTCCCTCCACCTTCTTCCTCCTCCCCCGCCGCCGCCGCCTCCCGGAGCCGTTTTCTACACACGCATACACACAGGAAAACTCTGGCTTAGGAGTTTTCCTATCCATCCCAGCTTTCTGTTCATTTTGGTCGTCGGAAGAGGCGGTTCTGATCAGCTACCCCATGCCTGAGTTGACTCAGCCGGAGGTCTACTCGCCCAGGACTCTGCAGGTGTGGAAGACGCTGTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTCAGATCCTCAGAGCTTTTGGACACCTTCGCCTTCTTTCTTCTGATTCTTCTTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAACTTCCTGACCATGAGTTGCTCGCCGCTTCCGCCGTTGATATCGCTTCTGTTGAAGATGAGGAGGAGTCCGATGGGCTTATGGAGAAACTGACGATAGTTCTCGACTTGGATGAAACTCTCATATGTGCATATGAGTCGTCTACTTTGCCTGCTGTTATTCGCAATCAAGCAATAGAAGCTGGACTGAAGTCTTTTGAACTGGAATGCTTTTCTTCAGACAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCAGGTCTGCACGATTTCTTAAACCATCTAGGTGGATTCGCAGATCTTGTACTCTTCACAGCTGGTCTTGAAGGGTATGCAAGACCTCTTGTTGACAGGATAGATGAAGAAAATCGATTTAGTCTTAGACTGTATAGGCCTTCAACAATTAGAACGGAATACCGAGATCATGTGAAGGATCTCTCCTGCCTATCAAAGGATCTAAGAAGAATAGTCATCGTTGACAATAATCCTTTCAGTTTTTTACTGCAACCTCTAAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGATTCACAGCTCCTAGATGTCATTCTTCCACTTCTAAAGCACCTCTCGCTGCAGAACGACGTCAGGCCGGTGCTGTACGAAAGATTCCATATGCCTGAATGGTTTCAGAAGCATGGAATTCAAACCTAAGTTAAATGAAGATTTGTGCAAGAAAAAAGGTACATTCTTCTCTGCACCATGTCAACAGTTAACACAATATCTTGTCCAATGGGCAGCCGCTTCATGAGTCAGATGTTGATTCTTGAACTTTTGTATAGCTTCATGTTGTACATCATGGATATGATCCCAAATAGTTTCATCCAATTGTTTGAAAATTATATGTAGTATTAAAATTGTAATTTTGTAGGAATTTTCTGATTTGTAATTTATTCATGCTATGTTGTTGGATGTGTTTTAGGAATTTTCTTCAACTTTTTACCAATAAATAGCAGAAGTCTCTCCCTGTTCCCTTTT ATGATCTTAAAGAAGCACCAGAATTGTCTTTTCTTATTGGCCGATTCTTTCACTTTCCCTTCTTCTCATAAATCCTCTTTCCCCTCCCCTACTCTCGTCCCCACGCGCGTCCTCTACACGCTCCCACTTGTCCTTAAAACTCCCTGCCCTCTCCTCGAGCGTCCCTCCACCTTCTTCCTCCTCCCCCGCCGCCGCCGCCTCCCGGAGCCGTTTTCTACACACGCATACACACAGGAAAACTCTGGCTTAGGAGTTTTCCTATCCATCCCAGCTTTCTGTTCATTTTGGTCGTCGGAAGAGGCGGTTCTGATCAGCTACCCCATGCCTGAGTTGACTCAGCCGGAGGTCTACTCGCCCAGGACTCTGCAGGTGTGGAAGACGCTGTTGAACTGGTTGGCTTTCTTCTTCCAGATCTTCGTTCAGATCCTCAGAGCTTTTGGACACCTTCGCCTTCTTTCTTCTGATTCTTCTTCTGATTCTTCGTCTCCGTCTTTTAAGCCTTTGCCGGTCGTTGAACTTCCTGACCATGAGTTGCTCGCCGCTTCCGCCGTTGATATCGCTTCTGTTGAAGATGAGGAGGAGTCCGATGGGCTTATGGAGAAACTGACGATAGTTCTCGACTTGGATGAAACTCTCATATGTGCATATGAGTCGTCTACTTTGCCTGCTGTTATTCGCAATCAAGCAATAGAAGCTGGACTGAAGTCTTTTGAACTGGAATGCTTTTCTTCAGACAAGGACTGTGAAGGGAAGCCTAAGGTCAACTATGTTACTGTCTTTGAGCGTCCAGGTCTGCACGATTTCTTAAACCATCTAGGTGGATTCGCAGATCTTGTACTCTTCACAGCTGGTCTTGAAGGGTATGCAAGACCTCTTGTTGACAGGATAGATGAAGAAAATCGATTTAGTCTTAGACTGTATAGGCCTTCAACAATTAGAACGGAATACCGAGATCATGTGAAGGATCTCTCCTGCCTATCAAAGGATCTAAGAAGAATAGTCATCGTTGACAATAATCCTTTCAGTTTTTTACTGCAACCTCTAAATGGAATTCCTTGCATTCCATTTTCTGCAGGGCAACCACACGATTCACAGCTCCTAGATGTCATTCTTCCACTTCTAAAGCACCTCTCGCTGCAGAACGACGTCAGGCCGGTGCTGTACGAAAGATTCCATATGCCTGAATGGTTTCAGAAGCATGGAATTCAAACCTAA MILKKHQNCLFLLADSFTFPSSHKSSFPSPTLVPTRVLYTLPLVLKTPCPLLERPSTFFLLPRRRRLPEPFSTHAYTQENSGLGVFLSIPAFCSFWSSEEAVLISYPMPELTQPEVYSPRTLQVWKTLLNWLAFFFQIFVQILRAFGHLRLLSSDSSSDSSSPSFKPLPVVELPDHELLAASAVDIASVEDEEESDGLMEKLTIVLDLDETLICAYESSTLPAVIRNQAIEAGLKSFELECFSSDKDCEGKPKVNYVTVFERPGLHDFLNHLGGFADLVLFTAGLEGYARPLVDRIDEENRFSLRLYRPSTIRTEYRDHVKDLSCLSKDLRRIVIVDNNPFSFLLQPLNGIPCIPFSAGQPHDSQLLDVILPLLKHLSLQNDVRPVLYERFHMPEWFQKHGIQT Homology
BLAST of ClCG07G004200 vs. NCBI nr
Match: XP_038893440.1 (CTD nuclear envelope phosphatase 1 homolog [Benincasa hispida]) HSP 1 Score: 575.9 bits (1483), Expect = 2.8e-160 Identity = 290/299 (96.99%), Postives = 293/299 (97.99%), Query Frame = 0
BLAST of ClCG07G004200 vs. NCBI nr
Match: KAG6599998.1 (CTD nuclear envelope phosphatase 1-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 563.1 bits (1450), Expect = 1.9e-156 Identity = 283/297 (95.29%), Postives = 285/297 (95.96%), Query Frame = 0
BLAST of ClCG07G004200 vs. NCBI nr
Match: KAG7030671.1 (CTD nuclear envelope phosphatase 1-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 562.0 bits (1447), Expect = 4.2e-156 Identity = 282/297 (94.95%), Postives = 285/297 (95.96%), Query Frame = 0
BLAST of ClCG07G004200 vs. NCBI nr
Match: XP_023518709.1 (CTD nuclear envelope phosphatase 1 homolog isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 561.6 bits (1446), Expect = 5.5e-156 Identity = 281/297 (94.61%), Postives = 285/297 (95.96%), Query Frame = 0
BLAST of ClCG07G004200 vs. NCBI nr
Match: XP_022996141.1 (CTD nuclear envelope phosphatase 1 homolog isoform X2 [Cucurbita maxima]) HSP 1 Score: 559.3 bits (1440), Expect = 2.7e-155 Identity = 280/297 (94.28%), Postives = 284/297 (95.62%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy Swiss-Prot
Match: Q54GB2 (CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=ctdspl2 PE=3 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.3e-19 Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy Swiss-Prot
Match: Q9GZU7 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens OX=9606 GN=CTDSP1 PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 6.5e-19 Identity = 64/188 (34.04%), Postives = 99/188 (52.66%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy Swiss-Prot
Match: P58466 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Mus musculus OX=10090 GN=Ctdsp1 PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 6.5e-19 Identity = 64/188 (34.04%), Postives = 99/188 (52.66%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy Swiss-Prot
Match: Q9VRG7 (CTD nuclear envelope phosphatase 1 homolog OS=Drosophila melanogaster OX=7227 GN=Dd PE=2 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 4.2e-18 Identity = 67/196 (34.18%), Postives = 99/196 (50.51%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy Swiss-Prot
Match: Q29I63 (CTD nuclear envelope phosphatase 1 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0269 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 4.2e-18 Identity = 67/196 (34.18%), Postives = 99/196 (50.51%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy TrEMBL
Match: A0A6J1K3V8 (CTD nuclear envelope phosphatase 1 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491444 PE=4 SV=1) HSP 1 Score: 559.3 bits (1440), Expect = 1.3e-155 Identity = 280/297 (94.28%), Postives = 284/297 (95.62%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy TrEMBL
Match: A0A5D3DVZ9 (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00150 PE=4 SV=1) HSP 1 Score: 558.1 bits (1437), Expect = 2.9e-155 Identity = 279/297 (93.94%), Postives = 284/297 (95.62%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy TrEMBL
Match: A0A1S3CIT5 (carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Cucumis melo OX=3656 GN=LOC103501444 PE=4 SV=1) HSP 1 Score: 558.1 bits (1437), Expect = 2.9e-155 Identity = 279/297 (93.94%), Postives = 284/297 (95.62%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy TrEMBL
Match: A0A0A0KM39 (FCP1 homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G203410 PE=4 SV=1) HSP 1 Score: 557.4 bits (1435), Expect = 5.0e-155 Identity = 278/297 (93.60%), Postives = 283/297 (95.29%), Query Frame = 0
BLAST of ClCG07G004200 vs. ExPASy TrEMBL
Match: A0A6J1FRE3 (CTD nuclear envelope phosphatase 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111447759 PE=4 SV=1) HSP 1 Score: 557.0 bits (1434), Expect = 6.5e-155 Identity = 282/297 (94.95%), Postives = 284/297 (95.62%), Query Frame = 0
BLAST of ClCG07G004200 vs. TAIR 10
Match: AT3G55960.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 396.4 bits (1017), Expect = 2.8e-110 Identity = 202/300 (67.33%), Postives = 241/300 (80.33%), Query Frame = 0
BLAST of ClCG07G004200 vs. TAIR 10
Match: AT1G29780.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 97.1 bits (240), Expect = 3.6e-20 Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 0
BLAST of ClCG07G004200 vs. TAIR 10
Match: AT5G46410.1 (SCP1-like small phosphatase 4 ) HSP 1 Score: 92.4 bits (228), Expect = 8.7e-19 Identity = 70/193 (36.27%), Postives = 102/193 (52.85%), Query Frame = 0
BLAST of ClCG07G004200 vs. TAIR 10
Match: AT5G46410.2 (SCP1-like small phosphatase 4 ) HSP 1 Score: 92.4 bits (228), Expect = 8.7e-19 Identity = 70/193 (36.27%), Postives = 102/193 (52.85%), Query Frame = 0
BLAST of ClCG07G004200 vs. TAIR 10
Match: AT5G45700.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 92.0 bits (227), Expect = 1.1e-18 Identity = 62/158 (39.24%), Postives = 84/158 (53.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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