ClCG07G003850 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG07G003850
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	60S ribosomal protein L35a-1
Location	CG_Chr07: 4381616 .. 4383560 (+)
RNA-Seq Expression	ClCG07G003850
Synteny	ClCG07G003850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAGGAAGGCAAGGAGAGAGAGTCAGGTCTGTAATCTAAACCTAAACAAAATCCATTTTTCAACTCCACTTTCAATGTAATCTAACCCCAAAATTGTTTCATTGTTCTTTCGCTTCTGTTTCTTGTTTGAATCAGACTCTACACCAGGGGAACAATTCTCGGCTACAAGAGGTAATCAAGCATTACTGTCTATTAACTCTTTATTATTCATTTGACTCCATTTTGTTGGTTTTATGTCTAGAAAATATTGGAGTATGAAACTGTATGGAGTACAAAAGGAATTTAGTTTGTCATTTGTTCGAAAGCTAAAGATTATCGTTGTGGTGGTTAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCCAAGGATGAGGTTTCCTGGTACCAAGGAAAGCGATTGGCATATATTTACAAGGCTAAAGTGAAGAAGAACGGATCTCATTATCGTTGCATTTGGGGCAAGGTTGTAAGGCCTCATGGTAACAGTGGCATTGTTAGAGCGAAGTTCAAGTCTAATCTCCCACCAAAGTCCATGGTATAGAGTTTTAGTAAAATAAAACAAAACCTTATGTGTTTGCGGCAGGTCTCTTTATATCTTGGTTTTAACAAGATTTTTCTTTTTAACTTCTTTGCAGGGTGACAAGGTTAGAGTATTCATGTACCCCAGCAACATTTAAGGTAACTAGATTCTTTATATGCTGCAAACTTCTAAGTTTTTATATTTCTCTTCTTTTTCCCCATGTGTGTTTACATGCTGTTTATTATGGCTTCAGTCTGTTGTGTCAAGTTGCACTAGTCTTGTTTTCTAACTTTATTGGTACGAAGTTGGTAGTTGAGTTCCAATATTCTCCATAATCATATTGAATGTGGGATGGGTTCGCCAAATGCATCATCAGTAGGAAGCATGGTTGCATTCAATTGATTTAGATATTTTGATTAAGTAGTACCTTTGTTTTAACCAAGATGGAGAATGCAGCTTTTGTTCAATTTTTTATGGAAATTTGACTGAATTGTGACAGGCCAGTCGTCTGTGCTTGCTTTAATGTTTAATAACTATGTTTTGGCCAATTAGTCGATCTCAAAATATATGTGGACGTGGACCTTTGTGGTGTTTTCTTTATTGGCAGTTGCCATCTTATTGTGGACGATGCTTGAATTTTAGGCAGACAAGTTTTATGAATTGTGCATGATTATATAGACGTCTTCTTTATTAGTAGTTGCCATCTTGTTGTTCTTGCTGCATTAAATTGTTTTGTTATTGTTATCTATTATGTTGGAAGGATTTTTGTTATTTATCAGACCCGGCTTAAATCAGGGCCTAAATCTGGTTCTCATTCTGATTCGTTGTTTGTTTGTTGTATTGTGCTAATGTTAAATATTACTCAATTGCAATAGCTGCAAGTTTATTTGTGGGTGAAGTGCAAACAGTGAAAATAAGGCCTGTGTTATGTTGTACTATTACATGTTAATTGAATAATATCTGTTGTACCCTTTGAATGCTCTCTTTACAAAAGGATAAAGTATCTCTAATTAGATAATTGGCATAACATGATGTTTGAACCTTCATTCTTAATATCTTCTTTTCTATATAATTTTATGCCATTTTTCTCAGATATCCTTTGAGTTCTAATTATCTTTTATTTATACATGTCGGATGTAAATGGTGTCTGTTAGATATCCTAAGACGAAGTTGAGTGTAAAATAGCTTTGACGGGTTCAATAATTTCTTAGGATGGATGTTTTGAATGAGTAATATGCTAATGAAACATGCTTTTTTGGGCTGGTAAGAGGACTTTGTATCCTACATTGAACTATCTAAGTAATATTTCAATATTGCATATATAATTACATAGCTTCTGTTTATTTACCATTGCTTATTTTTTCTTTGCAGCAATGGAGAACCTGATTGAAAAC

mRNA sequence

ATGGTGAAAGGAAGGCAAGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCCAAGGATGAGGTTTCCTGTTCAAGTCTAATCTCCCACCAAAGTCCATGGGTGACAAGGTTAGAGTATTCATGTACCCCAGCAACATTTAAGGTAACTAGATTCTTTATATGCTGCAAACTTCTAAGTTTTTATATTTCTCTTCTTTTTCCCCATGTGTGTTTACATGCTGTTTATTATGGCTTCAGTCTGTTGTGTCAAGTTGCACTAGTCTTGTTTTCTAACTTTATTGGTACGAAGTTGGTAGTTGAGTTCCAATATTCTCCATAATCATATTGAATGTGGGATGGGTTCGCCAAATGCATCATCAGTAGGAAGCATGGTTGCATTCAATTGATTTAGATATTTTGATTAAGTAGTACCTTTGTTTTAACCAAGATGGAGAATGCAGCTTTTGTTCAATTTTTTATGGAAATTTGACTGAATTGTGACAGGCCAGTCGTCTGTGCTTGCTTTAATGTTTAATAACTATGTTTTGGCCAATTAGTCGATCTCAAAATATATGTGGACGTGGACCTTTGTGGTGTTTTCTTTATTGGCAGTTGCCATCTTATTGTGGACGATGCTTGAATTTTAGGCAGACAAGTTTTATGAATTGTGCATGATTATATAGACGTCTTCTTTATTAGTAGTTGCCATCTTGTTGTTCTTGCTGCATTAAATTGTTTTGTTATTGTTATCTATTATGTTGGAAGGATTTTTGTTATTTATCAGACCCGGCTTAAATCAGGGCCTAAATCTGGTTCTCATTCTGATTCGTTGTTTGTTTGTTGTATTGTGCTAATGTTAAATATTACTCAATTGCAATAGCTGCAAGTTTATTTGTGGGTGAAGTGCAAACAGTGAAAATAAGGCCTGTGTTATGTTGTACTATTACATGTTAATTGAATAATATCTGTTGTACCCTTTGAATGCTCTCTTTACAAAAGGATAAAGTATCTCTAATTAGATAATTGGCATAACATGATGTTTGAACCTTCATTCTTAATATCTTCTTTTCTATATAATTTTATGCCATTTTTCTCAGATATCCTTTGAGTTCTAATTATCTTTTATTTATACATGTCGGATGTAAATGGTGTCTGTTAGATATCCTAAGACGAAGTTGAGTGTAAAATAGCTTTGACGGGTTCAATAATTTCTTAGGATGGATGTTTTGAATGAGTAATATGCTAATGAAACATGCTTTTTTGGGCTGCAATGGAGAACCTGATTGAAAAC

Coding sequence (CDS)

ATGGTGAAAGGAAGGCAAGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCCAAGGATGAGGTTTCCTGTTCAAGTCTAATCTCCCACCAAAGTCCATGGGTGACAAGGTTAGAGTATTCATGTACCCCAGCAACATTTAAGGTAACTAGATTCTTTATATGCTGCAAACTTCTAAGTTTTTATATTTCTCTTCTTTTTCCCCATGTGTGTTTACATGCTGTTTATTATGGCTTCAGTCTGTTGTGTCAAGTTGCACTAGTCTTGTTTTCTAACTTTATTGGTACGAAGTTGGTAGTTGAGTTCCAATATTCTCCATAA

Protein sequence

MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSCSSLISHQSPWVTRLEYSCTPATFKVTRFFICCKLLSFYISLLFPHVCLHAVYYGFSLLCQVALVLFSNFIGTKLVVEFQYSP

Homology

[Close]

BLAST of ClCG07G003850 vs. NCBI nr
Match: KAG6600953.1 (60S ribosomal protein L35a-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-23
Identity = 64/84 (76.19%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
          MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS             
Sbjct: 1  MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWSQGLMVTVASLE 60

Query: 61 -CSSLISHQSPWVTRLEYSCTPAT 71
            SSLI H+SPWVT  EYSCTPAT
Sbjct: 61 RSSSLICHRSPWVTGSEYSCTPAT 84

[Close]

BLAST of ClCG07G003850 vs. NCBI nr
Match: KAG6600019.1 (putative sugar phosphate/phosphate translocator, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-22
Identity = 69/112 (61.61%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
           MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS             
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWLLGLMGTVASLE 60

Query: 61  -CSSLISHQSPWVTRLEYSCTPATFKVTRFFI----CCKLLSFYISLLFPHV 95
             SSL  H+SPWVT  E SC PATFK    ++     C +  F   L F HV
Sbjct: 61  QSSSLTYHRSPWVTESECSCIPATFKQCLAWMKRVGGCYMKGFIFLLHFIHV 112

[Close]

BLAST of ClCG07G003850 vs. NCBI nr
Match: KAG9453290.1 (hypothetical protein H6P81_006194 [Aristolochia fimbriata])

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-20
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSC------------ 60
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+K+EV+             
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWLPGLTETVVLSV 60

Query: 61 --SSLISHQSPWVTRLEYSCTPATFK 73
             SLI  Q+PWVT  E+SCT AT+K
Sbjct: 61 PNLSLICPQNPWVTESEFSCTQATYK 86

[Close]

BLAST of ClCG07G003850 vs. NCBI nr
Match: KAF3968778.1 (hypothetical protein CMV_007364 [Castanea mollissima])

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+KDEV              
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKDEVGWWLGRTVTAALFV 60

Query: 61 -CSSLISHQSPWVTRLEYSCTPATFKV 74
            S  I HQ+PW   L +SCTPA F++
Sbjct: 61 PSSRPIFHQNPWGLELGFSCTPAIFEL 87

[Close]

BLAST of ClCG07G003850 vs. NCBI nr
Match: TKS17628.1 (60S ribosomal protein L35a-3 [Populus alba])

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-19
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+K+EV+             
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWSQGLMETAVLSE 60

Query: 61 -CSSLISHQSPWVTRLEYSCTPATFKVTRFF 78
            SSL   QSPW   LE+SC  ATF+  R F
Sbjct: 61 LSSSLTCLQSPWELVLEFSCIRATFEFLRRF 91

[Close]

BLAST of ClCG07G003850 vs. ExPASy Swiss-Prot
Match: Q9LMK0 (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-16
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVS
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVS 47

[Close]

BLAST of ClCG07G003850 vs. ExPASy Swiss-Prot
Match: Q9C912 (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-16
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVN 47

[Close]

BLAST of ClCG07G003850 vs. ExPASy Swiss-Prot
Match: Q9FZH0 (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-15
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVN 46

[Close]

BLAST of ClCG07G003850 vs. ExPASy Swiss-Prot
Match: P51422 (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVN 46

[Close]

BLAST of ClCG07G003850 vs. ExPASy Swiss-Prot
Match: Q55BN7 (60S ribosomal protein L35a OS=Dictyostelium discoideum OX=44689 GN=rpl35a PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 18/35 (51.43%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 11 RLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDE 46
          ++Y++G +LGY+RS++ QYPN SL++IEGV S+++
Sbjct: 3  KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSRED 37

[Close]

BLAST of ClCG07G003850 vs. ExPASy TrEMBL
Match: A0A4U5R208 (60S ribosomal protein L35a-3 OS=Populus alba OX=43335 GN=D5086_0000009990 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+K+EV+             
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWSQGLMETAVLSE 60

Query: 61 -CSSLISHQSPWVTRLEYSCTPATFKVTRFF 78
            SSL   QSPW   LE+SC  ATF+  R F
Sbjct: 61 LSSSLTCLQSPWELVLEFSCIRATFEFLRRF 91

[Close]

BLAST of ClCG07G003850 vs. ExPASy TrEMBL
Match: A0A5E4ECB9 (PREDICTED: 60S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B025507 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
          MVK RQGER+RLY  GT+LGYKRSKSNQYP TSL+QI GVN+K+EV+             
Sbjct: 1  MVKERQGERIRLYVGGTVLGYKRSKSNQYPGTSLIQINGVNTKEEVAWFPGLMVTVASFV 60

Query: 61 CSSL-ISHQSPWVTRLEYSCTPATFKVTRFF 78
           SSL I HQ+PWV  L YSC PA +K+ R +
Sbjct: 61 LSSLPICHQNPWVLVLGYSCIPAIYKLLRTY 91

[Close]

BLAST of ClCG07G003850 vs. ExPASy TrEMBL
Match: A0A5J5BAG4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_026336 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.5e-17
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+K+E++             
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEIAWSRGLTVTVVSFE 60

Query: 61 -CSSLISHQSPWVTRLEYSCTPATFK 73
            SS IS  +PW   L + CT  T+K
Sbjct: 61 LSSSPISLPNPWELGLGFLCTQVTYK 86

[Close]

BLAST of ClCG07G003850 vs. ExPASy TrEMBL
Match: A0A5E4FFR1 (PREDICTED: 60S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B008461 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS---------CSSL 60
          MVKGRQGER+RLY RGT+LGYKRSKSNQYP+ SL+QIE VN+K+EV+          SS 
Sbjct: 1  MVKGRQGERIRLYVRGTVLGYKRSKSNQYPSASLIQIENVNTKEEVAWYAVASFAPSSSP 60

Query: 61 ISHQSPWVTRLEYSCTPATFKV 74
          I   SPW     +SC PATF+V
Sbjct: 61 IFPPSPWELESGFSCIPATFEV 82

[Close]

BLAST of ClCG07G003850 vs. ExPASy TrEMBL
Match: A0A6S7MD15 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS13794 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 56/95 (58.95%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS------------- 60
          MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSL+QIEGVN+K+EV              
Sbjct: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLVQIEGVNTKEEVGWYQGKRMAYVYKA 60

Query: 61 ---------CSSLISHQSPWVTRLEYSCTPATFKV 74
                    S LI   +PW   LE SCT A  KV
Sbjct: 61 KVKKNGSHYSSRLIFLPNPWDLGLECSCTQAISKV 95

[Close]

BLAST of ClCG07G003850 vs. TAIR 10
Match: AT1G07070.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVS
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVS 47

[Close]

BLAST of ClCG07G003850 vs. TAIR 10
Match: AT1G74270.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 1  MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+
Sbjct: 1  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVN 47

[Close]

BLAST of ClCG07G003850 vs. TAIR 10
Match: AT1G41880.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-16
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVN 46

[Close]

BLAST of ClCG07G003850 vs. TAIR 10
Match: AT3G55750.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.2e-16
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 2  VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVS 48
          +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+
Sbjct: 1  MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVN 46

The following BLAST results are available for this feature:

BLAST of ClCG07G003850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600953.1	2.3e-23	76.19	60S ribosomal protein L35a-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6600019.1	5.7e-22	61.61	putative sugar phosphate/phosphate translocator, partial [Cucurbita argyrosperma...	[more]
KAG9453290.1	5.3e-20	66.28	hypothetical protein H6P81_006194 [Aristolochia fimbriata]	[more]
KAF3968778.1	2.0e-19	64.37	hypothetical protein CMV_007364 [Castanea mollissima]	[more]
TKS17628.1	4.5e-19	63.74	60S ribosomal protein L35a-3 [Populus alba]	[more]

BLAST of ClCG07G003850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK0	2.8e-16	87.23	60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=...	[more]
Q9C912	2.8e-16	87.23	60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=...	[more]
Q9FZH0	2.4e-15	82.61	60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=...	[more]
P51422	3.1e-15	82.61	60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=...	[more]
Q55BN7	1.1e-04	51.43	60S ribosomal protein L35a OS=Dictyostelium discoideum OX=44689 GN=rpl35a PE=3 S...	[more]

BLAST of ClCG07G003850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5R208	2.2e-19	63.74	60S ribosomal protein L35a-3 OS=Populus alba OX=43335 GN=D5086_0000009990 PE=3 S...	[more]
A0A5E4ECB9	3.5e-17	58.24	PREDICTED: 60S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B025507 PE=3 SV=1	[more]
A0A5J5BAG4	4.5e-17	60.47	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_026336 PE=3 SV=1	[more]
A0A5E4FFR1	1.0e-16	60.98	PREDICTED: 60S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B008461 PE=3 SV=1	[more]
A0A6S7MD15	1.3e-16	58.95	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS13794 PE=3 SV=1	[more]

BLAST of ClCG07G003850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07070.1	2.0e-17	87.23	Ribosomal protein L35Ae family protein	[more]
AT1G74270.1	2.0e-17	87.23	Ribosomal protein L35Ae family protein	[more]
AT1G41880.1	1.7e-16	82.61	Ribosomal protein L35Ae family protein	[more]
AT3G55750.1	2.2e-16	82.61	Ribosomal protein L35Ae family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001780	Ribosomal protein L35A	PFAM	PF01247	Ribosomal_L35Ae	coord: 12..47 e-value: 1.5E-10 score: 41.1
IPR001780	Ribosomal protein L35A	PANTHER	PTHR10902	60S RIBOSOMAL PROTEIN L35A	coord: 1..48
IPR038661	Ribosomal protein L35A superfamily	GENE3D	2.40.10.190	translation elongation factor selb, chain A, domain 4	coord: 2..73 e-value: 2.1E-12 score: 48.8
None	No IPR available	PANTHER	PTHR10902:SF20	60S RIBOSOMAL PROTEIN L35A-1	coord: 1..48
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 12..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G003850.2	ClCG07G003850.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome