Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCTGCAGTTGGAGTATTAGTGGATTACACAATTAAACCAATTTCTCATCACTTAGATTATCTGTTTTGCTACAACGAAAATATTAAGAAAGTTAGGTTGAAAAAAACTTGAAATTCTTGGAACTATTAAAGATATATACTGTGCATATTTTGGTTAGTCAGGATAAAGCCAAAAGGAATGCAATCTTTGATGGAGTTACCAAGTGGTTGGACGATGCAGAGAATGTGCTCGAGATGGGACAACAAAATGGAGGAGTATCAAGTTCTAATCCCTCGTATTTTAATTGTGTCCAACGACATCACCTATCTAAAAAAGTAAAGAAGATGGTGGGAAAGATTATTCACCTCATAAATGAAGGAAACAATTTAACAAAAATAACGTCGGTTATCCTAGTACCTTCTCTCGATACTAATTCTCCTACTCTACCTACAAATGATCAAATTATCGAATCAAGAGATAAATGA
mRNA sequence
ATGGGTGCTGCAGTTGGAGTATTAGTGGATTACACAATTAAACCAATTTCTCATCACTTAGATTATCTGTTTTGCTACAACGAAAATATTAAGAAAATATATACTGTGCATATTTTGGTTAGTCAGGATAAAGCCAAAAGGAATGCAATCTTTGATGGAGTTACCAAGTGGTTGGACGATGCAGAGAATGTGCTCGAGATGGGACAACAAAATGGAGGAGTATCAAGTTCTAATCCCTCGTATTTTAATTGTGTCCAACGACATCACCTATCTAAAAAAGTAAAGAAGATGGTGGGAAAGATTATTCACCTCATAAATGAAGGAAACAATTTAACAAAAATAACGTCGGTTATCCTAGTACCTTCTCTCGATACTAATTCTCCTACTCTACCTACAAATGATCAAATTATCGAATCAAGAGATAAATGA
Coding sequence (CDS)
ATGGGTGCTGCAGTTGGAGTATTAGTGGATTACACAATTAAACCAATTTCTCATCACTTAGATTATCTGTTTTGCTACAACGAAAATATTAAGAAAATATATACTGTGCATATTTTGGTTAGTCAGGATAAAGCCAAAAGGAATGCAATCTTTGATGGAGTTACCAAGTGGTTGGACGATGCAGAGAATGTGCTCGAGATGGGACAACAAAATGGAGGAGTATCAAGTTCTAATCCCTCGTATTTTAATTGTGTCCAACGACATCACCTATCTAAAAAAGTAAAGAAGATGGTGGGAAAGATTATTCACCTCATAAATGAAGGAAACAATTTAACAAAAATAACGTCGGTTATCCTAGTACCTTCTCTCGATACTAATTCTCCTACTCTACCTACAAATGATCAAATTATCGAATCAAGAGATAAATGA
Protein sequence
MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKIYTVHILVSQDKAKRNAIFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITSVILVPSLDTNSPTLPTNDQIIESRDK
Homology
BLAST of ClCG07G003000 vs. NCBI nr
Match:
XP_038887230.1 (probable disease resistance protein At5g63020 [Benincasa hispida])
HSP 1 Score: 147.9 bits (372), Expect = 6.6e-32
Identity = 85/151 (56.29%), Postives = 96/151 (63.58%), Query Frame = 0
Query: 1 MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNA 60
M A VGVL DYTIKPI H LDYLF Y NIK++ TV ILV+QDK K NA
Sbjct: 73 MDAVVGVLADYTIKPILHQLDYLFHYKGNIKEVEKKLGILRTTERTVQILVNQDKGKGNA 132
Query: 61 IFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGN 120
IFDGVT WLD+ +NVL+M QQN + NPS FNCVQRH LS+K KK + I LINEG
Sbjct: 133 IFDGVTNWLDNVKNVLDMAQQN---EAPNPSCFNCVQRHQLSRKAKKRLEDINELINEGR 192
Query: 121 NLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
K VPS DT+S TLP + Q ESR
Sbjct: 193 QFNKDNVGYPVPSPDTSSSTLPADYQFFESR 220
BLAST of ClCG07G003000 vs. NCBI nr
Match:
XP_038887227.1 (disease resistance protein At4g27190-like [Benincasa hispida])
HSP 1 Score: 142.9 bits (359), Expect = 2.1e-30
Identity = 84/151 (55.63%), Postives = 96/151 (63.58%), Query Frame = 0
Query: 1 MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKIY-----------TVHILVSQDKAKRNA 60
M A VGV+V+YTI+PI H L YLF YN N+KK+ TV ILVSQDK K NA
Sbjct: 1 MDAVVGVVVEYTIRPILHQLGYLFRYNGNVKKLQEKHKTLETTRDTVQILVSQDKGKGNA 60
Query: 61 IFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGN 120
IFD VTKWLD+ + V M +QN NPS FN V+RH LS+K KKMV I LINEG
Sbjct: 61 IFDEVTKWLDNVKEVSNMTKQN---KELNPSCFNFVKRHRLSRKSKKMVEDIAELINEGR 120
Query: 121 NLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
K VPS DTN PT+PT+ QIIESR
Sbjct: 121 RFNKDRIGYPVPSSDTNCPTIPTDYQIIESR 148
BLAST of ClCG07G003000 vs. NCBI nr
Match:
XP_038887228.1 (probable disease resistance protein At5g43740 [Benincasa hispida])
HSP 1 Score: 139.4 bits (350), Expect = 2.4e-29
Identity = 83/151 (54.97%), Postives = 95/151 (62.91%), Query Frame = 0
Query: 1 MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKIY-----------TVHILVSQDKAKRNA 60
M A VGV+V+YTI PI H L YLF YN NIKK+ TV ILVSQDK K NA
Sbjct: 1 MDAVVGVVVEYTIGPILHQLGYLFRYNGNIKKLQEKHRTLETTKDTVQILVSQDKGKGNA 60
Query: 61 IFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGN 120
IF+ VTKWLD+ + V +M +QN NPS FN V+RH LS+K KKMV I LINEG
Sbjct: 61 IFNEVTKWLDNVKEVSDMTKQN---EELNPSCFNFVKRHQLSRKAKKMVEDIAELINEGR 120
Query: 121 NLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
K VPS D N PT+PT+ QIIESR
Sbjct: 121 QFNKDNIDYPVPSSDINCPTIPTDYQIIESR 148
BLAST of ClCG07G003000 vs. NCBI nr
Match:
XP_022143564.1 (probable disease resistance protein At4g27220 [Momordica charantia])
HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 55/149 (36.91%), Postives = 76/149 (51.01%), Query Frame = 0
Query: 8 LVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTK 67
+V YT+ PI L YLF YN NIK + V +LV++ ++ I+D V+
Sbjct: 11 VVQYTVAPIGRQLAYLFFYNRNIKDLEKQLENLKATRERVQMLVNEARSNAYEIYDEVST 70
Query: 68 WL-----DDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNL 127
WL + N+ + +SSN S N VQRH LS+K KK V I+ LI EG
Sbjct: 71 WLLVEVDVELPNMPRQKEDGSHRNSSNLSCLNFVQRHKLSRKSKKRVKDILQLIEEGKKF 130
Query: 128 TKITSVILVPSLDTNSPTLPTNDQIIESR 141
K+ +P DT S TLP + Q++ESR
Sbjct: 131 EKVGHPAPLP--DTKSSTLPADYQVLESR 157
BLAST of ClCG07G003000 vs. NCBI nr
Match:
XP_038902150.1 (disease resistance protein At4g27190-like [Benincasa hispida])
HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 0
Query: 8 LVDYTIKPISHHLDYLFCYNENIKKIY-----------TVHILVSQDKAKRNAIFDGVTK 67
+V TIKPI H L YL CYN+N K++ V V + K K + D V+K
Sbjct: 7 VVAATIKPIGHQLGYLVCYNKNKKELQEQIENLETTKRDVDKRVEEAKGKAYTVSDEVSK 66
Query: 68 WLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITS 127
WL D + + Q +SSSNPS FN QR+ LS++ KK V I+ LI++ N ++
Sbjct: 67 WLTDVDGAMIHHQ----LSSSNPSCFNLAQRYRLSRETKKKVNYILQLIDKRNKFLEVG- 126
Query: 128 VILVPSLDTNSPTLPTNDQIIESR 141
P DT + +P + Q++ES+
Sbjct: 127 -YRAPLADTENTIVPGDYQVLESK 144
BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match:
A0A0A0LT62 (SAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 4.5e-18
Identity = 58/100 (58.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query: 41 SQDKAKRNAIFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGK 100
S+ KAK NA+FDGV+KWL ++VLE+ QQN NPS FN V+R+ LS+K KK V
Sbjct: 131 SRIKAKGNAVFDGVSKWLTIVKDVLEIAQQN-----ENPSCFNFVERYQLSRKAKKRVEN 190
Query: 101 IIHLINEGNNLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
II LINEGN K VPS DTNSPTLPT+ QII SR
Sbjct: 191 IIELINEGNGFNKDNVGYPVPSPDTNSPTLPTDYQIIASR 225
BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match:
A0A6J1CPP4 (probable disease resistance protein At4g27220 OS=Momordica charantia OX=3673 GN=LOC111013433 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 8.2e-12
Identity = 55/149 (36.91%), Postives = 76/149 (51.01%), Query Frame = 0
Query: 8 LVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTK 67
+V YT+ PI L YLF YN NIK + V +LV++ ++ I+D V+
Sbjct: 11 VVQYTVAPIGRQLAYLFFYNRNIKDLEKQLENLKATRERVQMLVNEARSNAYEIYDEVST 70
Query: 68 WL-----DDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNL 127
WL + N+ + +SSN S N VQRH LS+K KK V I+ LI EG
Sbjct: 71 WLLVEVDVELPNMPRQKEDGSHRNSSNLSCLNFVQRHKLSRKSKKRVKDILQLIEEGKKF 130
Query: 128 TKITSVILVPSLDTNSPTLPTNDQIIESR 141
K+ +P DT S TLP + Q++ESR
Sbjct: 131 EKVGHPAPLP--DTKSSTLPADYQVLESR 157
BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match:
A0A0A0LTN4 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 0
Query: 12 TIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTKWLDD 71
TIKPI H L YL CYN N K++ V+ V + K K I + V+KWL D
Sbjct: 11 TIKPIGHQLGYLVCYNRNKKELREQLENLETTKKDVNQRVEEAKGKSYTISEEVSKWLAD 70
Query: 72 AENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITSVILV 131
+N + + +S+SNPS FN QR+ LS+K +K V I+ L+N+ N+ ++
Sbjct: 71 VDNAITHDE----LSNSNPSCFNLAQRYQLSRKREKQVNYILQLMNKRNSFVEVG--YRA 130
Query: 132 PSLDTNSPTLPTNDQIIESR 141
P DT + +P + Q++ES+
Sbjct: 131 PLPDTENTVVPGDYQVLESK 144
BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match:
A0A6J1DLB8 (disease resistance protein RPS5-like OS=Momordica charantia OX=3673 GN=LOC111022189 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 0
Query: 5 VGVLVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDG 64
V + +YT+ PI L YLF Y++NIK + V ILV++ ++ I+D
Sbjct: 8 VAKVAEYTVAPIGRQLGYLFFYHKNIKDVEKQLENLKTTREKVQILVNEARSNAYEIYDE 67
Query: 65 VTKWL--DDAENVLEMGQQNGGVSS---SNPSYFNCVQRHHLSKKVKKMVGKIIHLINEG 124
V+ WL + + M +N GVS+ SN S N VQRH LS++ KK V I+ +I +G
Sbjct: 68 VSTWLLAEVDVELRNMPLENKGVSNRKGSNTSCLNFVQRHKLSRRSKKRVKDILEIIEKG 127
Query: 125 NNLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
K+ +P DT S TLP + QI+ESR
Sbjct: 128 KKFDKVGYPAPLP--DTKSSTLPADYQILESR 157
BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match:
A0A5D3BQI3 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38G00050 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 0
Query: 12 TIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTKWLDD 71
TIKPI H L YL CYN N K++ V+ V + K K I + V+KWL D
Sbjct: 11 TIKPIGHQLGYLVCYNRNKKELRDQLENLETTKRDVNQRVQEAKGKSYTISEEVSKWLAD 70
Query: 72 AENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITSVILV 131
+N + + +S+SNPS FN +R+ LS+K +K V I+ L+N+ N+ ++
Sbjct: 71 VDNAI----LHDELSNSNPSCFNLARRYQLSRKREKQVNYILQLMNKRNSFVEVG--YRA 130
Query: 132 PSLDTNSPTLPTNDQIIESR 141
P DT + +P + Q++ES+
Sbjct: 131 PLPDTENIVVPGDYQVLESK 144
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038887230.1 | 6.6e-32 | 56.29 | probable disease resistance protein At5g63020 [Benincasa hispida] | [more] |
XP_038887227.1 | 2.1e-30 | 55.63 | disease resistance protein At4g27190-like [Benincasa hispida] | [more] |
XP_038887228.1 | 2.4e-29 | 54.97 | probable disease resistance protein At5g43740 [Benincasa hispida] | [more] |
XP_022143564.1 | 1.7e-11 | 36.91 | probable disease resistance protein At4g27220 [Momordica charantia] | [more] |
XP_038902150.1 | 1.7e-11 | 36.11 | disease resistance protein At4g27190-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LT62 | 4.5e-18 | 58.00 | SAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=4 SV... | [more] |
A0A6J1CPP4 | 8.2e-12 | 36.91 | probable disease resistance protein At4g27220 OS=Momordica charantia OX=3673 GN=... | [more] |
A0A0A0LTN4 | 1.1e-11 | 35.71 | NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=4... | [more] |
A0A6J1DLB8 | 1.4e-11 | 36.84 | disease resistance protein RPS5-like OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A5D3BQI3 | 1.2e-10 | 35.00 | Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
Match Name | E-value | Identity | Description | |