ClCG07G003000 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G003000
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDisease resistance protein
LocationCG_Chr07: 3085268 .. 3085737 (-)
RNA-Seq ExpressionClCG07G003000
SyntenyClCG07G003000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCTGCAGTTGGAGTATTAGTGGATTACACAATTAAACCAATTTCTCATCACTTAGATTATCTGTTTTGCTACAACGAAAATATTAAGAAAGTTAGGTTGAAAAAAACTTGAAATTCTTGGAACTATTAAAGATATATACTGTGCATATTTTGGTTAGTCAGGATAAAGCCAAAAGGAATGCAATCTTTGATGGAGTTACCAAGTGGTTGGACGATGCAGAGAATGTGCTCGAGATGGGACAACAAAATGGAGGAGTATCAAGTTCTAATCCCTCGTATTTTAATTGTGTCCAACGACATCACCTATCTAAAAAAGTAAAGAAGATGGTGGGAAAGATTATTCACCTCATAAATGAAGGAAACAATTTAACAAAAATAACGTCGGTTATCCTAGTACCTTCTCTCGATACTAATTCTCCTACTCTACCTACAAATGATCAAATTATCGAATCAAGAGATAAATGA

mRNA sequence

ATGGGTGCTGCAGTTGGAGTATTAGTGGATTACACAATTAAACCAATTTCTCATCACTTAGATTATCTGTTTTGCTACAACGAAAATATTAAGAAAATATATACTGTGCATATTTTGGTTAGTCAGGATAAAGCCAAAAGGAATGCAATCTTTGATGGAGTTACCAAGTGGTTGGACGATGCAGAGAATGTGCTCGAGATGGGACAACAAAATGGAGGAGTATCAAGTTCTAATCCCTCGTATTTTAATTGTGTCCAACGACATCACCTATCTAAAAAAGTAAAGAAGATGGTGGGAAAGATTATTCACCTCATAAATGAAGGAAACAATTTAACAAAAATAACGTCGGTTATCCTAGTACCTTCTCTCGATACTAATTCTCCTACTCTACCTACAAATGATCAAATTATCGAATCAAGAGATAAATGA

Coding sequence (CDS)

ATGGGTGCTGCAGTTGGAGTATTAGTGGATTACACAATTAAACCAATTTCTCATCACTTAGATTATCTGTTTTGCTACAACGAAAATATTAAGAAAATATATACTGTGCATATTTTGGTTAGTCAGGATAAAGCCAAAAGGAATGCAATCTTTGATGGAGTTACCAAGTGGTTGGACGATGCAGAGAATGTGCTCGAGATGGGACAACAAAATGGAGGAGTATCAAGTTCTAATCCCTCGTATTTTAATTGTGTCCAACGACATCACCTATCTAAAAAAGTAAAGAAGATGGTGGGAAAGATTATTCACCTCATAAATGAAGGAAACAATTTAACAAAAATAACGTCGGTTATCCTAGTACCTTCTCTCGATACTAATTCTCCTACTCTACCTACAAATGATCAAATTATCGAATCAAGAGATAAATGA

Protein sequence

MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKIYTVHILVSQDKAKRNAIFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITSVILVPSLDTNSPTLPTNDQIIESRDK
Homology
BLAST of ClCG07G003000 vs. NCBI nr
Match: XP_038887230.1 (probable disease resistance protein At5g63020 [Benincasa hispida])

HSP 1 Score: 147.9 bits (372), Expect = 6.6e-32
Identity = 85/151 (56.29%), Postives = 96/151 (63.58%), Query Frame = 0

Query: 1   MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNA 60
           M A VGVL DYTIKPI H LDYLF Y  NIK++            TV ILV+QDK K NA
Sbjct: 73  MDAVVGVLADYTIKPILHQLDYLFHYKGNIKEVEKKLGILRTTERTVQILVNQDKGKGNA 132

Query: 61  IFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGN 120
           IFDGVT WLD+ +NVL+M QQN    + NPS FNCVQRH LS+K KK +  I  LINEG 
Sbjct: 133 IFDGVTNWLDNVKNVLDMAQQN---EAPNPSCFNCVQRHQLSRKAKKRLEDINELINEGR 192

Query: 121 NLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
              K      VPS DT+S TLP + Q  ESR
Sbjct: 193 QFNKDNVGYPVPSPDTSSSTLPADYQFFESR 220

BLAST of ClCG07G003000 vs. NCBI nr
Match: XP_038887227.1 (disease resistance protein At4g27190-like [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-30
Identity = 84/151 (55.63%), Postives = 96/151 (63.58%), Query Frame = 0

Query: 1   MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKIY-----------TVHILVSQDKAKRNA 60
           M A VGV+V+YTI+PI H L YLF YN N+KK+            TV ILVSQDK K NA
Sbjct: 1   MDAVVGVVVEYTIRPILHQLGYLFRYNGNVKKLQEKHKTLETTRDTVQILVSQDKGKGNA 60

Query: 61  IFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGN 120
           IFD VTKWLD+ + V  M +QN      NPS FN V+RH LS+K KKMV  I  LINEG 
Sbjct: 61  IFDEVTKWLDNVKEVSNMTKQN---KELNPSCFNFVKRHRLSRKSKKMVEDIAELINEGR 120

Query: 121 NLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
              K      VPS DTN PT+PT+ QIIESR
Sbjct: 121 RFNKDRIGYPVPSSDTNCPTIPTDYQIIESR 148

BLAST of ClCG07G003000 vs. NCBI nr
Match: XP_038887228.1 (probable disease resistance protein At5g43740 [Benincasa hispida])

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-29
Identity = 83/151 (54.97%), Postives = 95/151 (62.91%), Query Frame = 0

Query: 1   MGAAVGVLVDYTIKPISHHLDYLFCYNENIKKIY-----------TVHILVSQDKAKRNA 60
           M A VGV+V+YTI PI H L YLF YN NIKK+            TV ILVSQDK K NA
Sbjct: 1   MDAVVGVVVEYTIGPILHQLGYLFRYNGNIKKLQEKHRTLETTKDTVQILVSQDKGKGNA 60

Query: 61  IFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGN 120
           IF+ VTKWLD+ + V +M +QN      NPS FN V+RH LS+K KKMV  I  LINEG 
Sbjct: 61  IFNEVTKWLDNVKEVSDMTKQN---EELNPSCFNFVKRHQLSRKAKKMVEDIAELINEGR 120

Query: 121 NLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
              K      VPS D N PT+PT+ QIIESR
Sbjct: 121 QFNKDNIDYPVPSSDINCPTIPTDYQIIESR 148

BLAST of ClCG07G003000 vs. NCBI nr
Match: XP_022143564.1 (probable disease resistance protein At4g27220 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 55/149 (36.91%), Postives = 76/149 (51.01%), Query Frame = 0

Query: 8   LVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTK 67
           +V YT+ PI   L YLF YN NIK +             V +LV++ ++    I+D V+ 
Sbjct: 11  VVQYTVAPIGRQLAYLFFYNRNIKDLEKQLENLKATRERVQMLVNEARSNAYEIYDEVST 70

Query: 68  WL-----DDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNL 127
           WL      +  N+    +     +SSN S  N VQRH LS+K KK V  I+ LI EG   
Sbjct: 71  WLLVEVDVELPNMPRQKEDGSHRNSSNLSCLNFVQRHKLSRKSKKRVKDILQLIEEGKKF 130

Query: 128 TKITSVILVPSLDTNSPTLPTNDQIIESR 141
            K+     +P  DT S TLP + Q++ESR
Sbjct: 131 EKVGHPAPLP--DTKSSTLPADYQVLESR 157

BLAST of ClCG07G003000 vs. NCBI nr
Match: XP_038902150.1 (disease resistance protein At4g27190-like [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 0

Query: 8   LVDYTIKPISHHLDYLFCYNENIKKIY-----------TVHILVSQDKAKRNAIFDGVTK 67
           +V  TIKPI H L YL CYN+N K++             V   V + K K   + D V+K
Sbjct: 7   VVAATIKPIGHQLGYLVCYNKNKKELQEQIENLETTKRDVDKRVEEAKGKAYTVSDEVSK 66

Query: 68  WLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITS 127
           WL D +  +   Q    +SSSNPS FN  QR+ LS++ KK V  I+ LI++ N   ++  
Sbjct: 67  WLTDVDGAMIHHQ----LSSSNPSCFNLAQRYRLSRETKKKVNYILQLIDKRNKFLEVG- 126

Query: 128 VILVPSLDTNSPTLPTNDQIIESR 141
               P  DT +  +P + Q++ES+
Sbjct: 127 -YRAPLADTENTIVPGDYQVLESK 144

BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match: A0A0A0LT62 (SAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.5e-18
Identity = 58/100 (58.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query: 41  SQDKAKRNAIFDGVTKWLDDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGK 100
           S+ KAK NA+FDGV+KWL   ++VLE+ QQN      NPS FN V+R+ LS+K KK V  
Sbjct: 131 SRIKAKGNAVFDGVSKWLTIVKDVLEIAQQN-----ENPSCFNFVERYQLSRKAKKRVEN 190

Query: 101 IIHLINEGNNLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
           II LINEGN   K      VPS DTNSPTLPT+ QII SR
Sbjct: 191 IIELINEGNGFNKDNVGYPVPSPDTNSPTLPTDYQIIASR 225

BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match: A0A6J1CPP4 (probable disease resistance protein At4g27220 OS=Momordica charantia OX=3673 GN=LOC111013433 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.2e-12
Identity = 55/149 (36.91%), Postives = 76/149 (51.01%), Query Frame = 0

Query: 8   LVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTK 67
           +V YT+ PI   L YLF YN NIK +             V +LV++ ++    I+D V+ 
Sbjct: 11  VVQYTVAPIGRQLAYLFFYNRNIKDLEKQLENLKATRERVQMLVNEARSNAYEIYDEVST 70

Query: 68  WL-----DDAENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNL 127
           WL      +  N+    +     +SSN S  N VQRH LS+K KK V  I+ LI EG   
Sbjct: 71  WLLVEVDVELPNMPRQKEDGSHRNSSNLSCLNFVQRHKLSRKSKKRVKDILQLIEEGKKF 130

Query: 128 TKITSVILVPSLDTNSPTLPTNDQIIESR 141
            K+     +P  DT S TLP + Q++ESR
Sbjct: 131 EKVGHPAPLP--DTKSSTLPADYQVLESR 157

BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match: A0A0A0LTN4 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 12  TIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTKWLDD 71
           TIKPI H L YL CYN N K++             V+  V + K K   I + V+KWL D
Sbjct: 11  TIKPIGHQLGYLVCYNRNKKELREQLENLETTKKDVNQRVEEAKGKSYTISEEVSKWLAD 70

Query: 72  AENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITSVILV 131
            +N +   +    +S+SNPS FN  QR+ LS+K +K V  I+ L+N+ N+  ++      
Sbjct: 71  VDNAITHDE----LSNSNPSCFNLAQRYQLSRKREKQVNYILQLMNKRNSFVEVG--YRA 130

Query: 132 PSLDTNSPTLPTNDQIIESR 141
           P  DT +  +P + Q++ES+
Sbjct: 131 PLPDTENTVVPGDYQVLESK 144

BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match: A0A6J1DLB8 (disease resistance protein RPS5-like OS=Momordica charantia OX=3673 GN=LOC111022189 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 0

Query: 5   VGVLVDYTIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDG 64
           V  + +YT+ PI   L YLF Y++NIK +             V ILV++ ++    I+D 
Sbjct: 8   VAKVAEYTVAPIGRQLGYLFFYHKNIKDVEKQLENLKTTREKVQILVNEARSNAYEIYDE 67

Query: 65  VTKWL--DDAENVLEMGQQNGGVSS---SNPSYFNCVQRHHLSKKVKKMVGKIIHLINEG 124
           V+ WL  +    +  M  +N GVS+   SN S  N VQRH LS++ KK V  I+ +I +G
Sbjct: 68  VSTWLLAEVDVELRNMPLENKGVSNRKGSNTSCLNFVQRHKLSRRSKKRVKDILEIIEKG 127

Query: 125 NNLTKITSVILVPSLDTNSPTLPTNDQIIESR 141
               K+     +P  DT S TLP + QI+ESR
Sbjct: 128 KKFDKVGYPAPLP--DTKSSTLPADYQILESR 157

BLAST of ClCG07G003000 vs. ExPASy TrEMBL
Match: A0A5D3BQI3 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38G00050 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 12  TIKPISHHLDYLFCYNENIKKI-----------YTVHILVSQDKAKRNAIFDGVTKWLDD 71
           TIKPI H L YL CYN N K++             V+  V + K K   I + V+KWL D
Sbjct: 11  TIKPIGHQLGYLVCYNRNKKELRDQLENLETTKRDVNQRVQEAKGKSYTISEEVSKWLAD 70

Query: 72  AENVLEMGQQNGGVSSSNPSYFNCVQRHHLSKKVKKMVGKIIHLINEGNNLTKITSVILV 131
            +N +     +  +S+SNPS FN  +R+ LS+K +K V  I+ L+N+ N+  ++      
Sbjct: 71  VDNAI----LHDELSNSNPSCFNLARRYQLSRKREKQVNYILQLMNKRNSFVEVG--YRA 130

Query: 132 PSLDTNSPTLPTNDQIIESR 141
           P  DT +  +P + Q++ES+
Sbjct: 131 PLPDTENIVVPGDYQVLESK 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887230.16.6e-3256.29probable disease resistance protein At5g63020 [Benincasa hispida][more]
XP_038887227.12.1e-3055.63disease resistance protein At4g27190-like [Benincasa hispida][more]
XP_038887228.12.4e-2954.97probable disease resistance protein At5g43740 [Benincasa hispida][more]
XP_022143564.11.7e-1136.91probable disease resistance protein At4g27220 [Momordica charantia][more]
XP_038902150.11.7e-1136.11disease resistance protein At4g27190-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LT624.5e-1858.00SAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G201260 PE=4 SV... [more]
A0A6J1CPP48.2e-1236.91probable disease resistance protein At4g27220 OS=Momordica charantia OX=3673 GN=... [more]
A0A0A0LTN41.1e-1135.71NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=4... [more]
A0A6J1DLB81.4e-1136.84disease resistance protein RPS5-like OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5D3BQI31.2e-1035.00Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G003000.1ClCG07G003000.1mRNA