ClCG07G001140 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G001140
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionNucleolar protein 10
LocationCG_Chr07: 1255905 .. 1264141 (-)
RNA-Seq ExpressionClCG07G001140
SyntenyClCG07G001140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTCCAAACAACTAGACAACCCAATCTAGGACGTAAGGGTTGGATTGAGGATTGGTCAATATTTTGGAAAATTAAATTTCTAATTAGATTTTTTTTTGGTCGATTCAACTTGATAGCAGTTGTCTTCACCGAGTCTCTCTCTCCCTTGGAGTCGTCGTATATTAAAAATGTGTTCAGACAGTAACAAGGGAACAATCATTGATGACGGTTTAACCAACATGATAATTACTCAACTAATATAATACACATACTTTCAATCATATGTGTGTGAGCACATGTGCGCGCGTGCATGTGAAATAACATGGTTAAATATTTTATCTATTTTTTTTTAAAAAATAAACAAAATTTTAACTTTCCAAAAATTTAAAATTTTTGTAAAATTTTGTTCGTAAAAGATCTTTAGTTATATTTTAACTGAACACTGTCAATTTTACCAATATGAAACGAAATTCAAACTAAAAGAATACATACATAACATAAACAAAGAGTCCATCCATAGTGGGTGATCATCAAATCAAATGGCTCCTAATTTATGGGATCAAGTATAGGTAGCAAGTTCATTTGCATCTGAGTTACACTTGAAATTAATTAGAAGAAAACCTTGGATGGTGCTGCGAGTTTGCGAGTTTTAAAATTAAATTGTCAGTTCAAACCAAACCGAACCGGGTTTAGTATATATATAAAATGTTAGGTTTTCATTCTTCATTTGAGCAGCCGCCCTTAGTCTGTCTGCCGTTCATCTCCTCGCCTGGCGTTGGTCCTCCGTCACCCTCGCCGTTCGTTTAGTGCCGCACCACCGCCGTTCTCCGTCGCGCCGCCGGACGTCCTGCACCAAAGTTACTTCCTCCTCTGTTCCTATTTTATTGTCTGTTTAGAGCCTTTCGTCCTATTTGTGTAATCTATAAATTTACTTGGAATCAACGAATCACCAAGTTTTTCTTTTTACAGGTTGAGTATTATCAACGATGTATCTTCAGTTTTACATAAACGACAATGGTGATAAAGTCTACACCACAAAGGTTTGTCTTTCTCGTTCCTTCTTTTTCTCTGTGTAAAAGTTCATCGATATCACATTATTTGAGTAGTGGGGTTGAATTTCTTTTAATCCTTAATGTATAAACTGCTTCTGCTAAGTCTCAGATAAGCAGTATTATATGGAGTCCTTGATTCTGAAGATATTGAAGGATTACTGAGTCAATGACCATAAGTTTTGGAGTCTGGATTAGTTCTATTTGAAGTAGGCTACCGTTATCAAGTCCCCGTTATTATTGAAGTTGCATTAATGTTGTGTAGCCATTAAATGATTGATAAATCCATGGTAAACCTTTGCTTAGAATGTCTCAACTTTACAAAAAGTTTGGCTTTGAGCTTTGTTCCAAGAACTTCCAATCCTCCCTTCTTTACTATACCATATCATGATGGTAGTTTAGAATTACCTTTGTCCCTTCCTTGACCATGAAGGAGTAGAAGTTTTAGACTTTAGACGCCATTCTTTCTCTACTAACTTCCCCAAAACAAAACATAACAATTCACAAAATTTTATTCACCAAATCCCTTGAATTTCGGGCAAAGAGAAACAAACCTGCAATGCAATCATTCAATACTTTTGTTTACAAAGTGGGACAATGCATAATTGGAGTAGCCCAGACATAAAACCATATCATACATTTAGAGATGTTGATTGGCAATTGACCAAAACATTCAATTACCTAAATGTGAGGCAGGTGAATGTAACACACACATGAATCTTCATTCCAAACCACTAATAATTGCCTTCCTACGAGTTAGTTTCAAATAGGTCATACATCGTCAGTTCCAATTTTGTACAACAAATAAGCATACAATCCCCAAAACAGTATTTGGCATATCCAGATAGTCCTATCGAATTGAACAAATTTTTTCATAAACATTTGAAACAAAACATATAGTTCAAAATAACAAGTTCAATGGAAGAATTCATCTAATTAAACCAATCAAACTTTTCAATAGCTTTTAGAAGTAACAAAACAAAAAACACAATTGAAAACATTCCCAAAAATCTTTCAAAGTAGTCACATACTTTCATTTAGCAAAACTTTACATACAGAGCAATTTTAGTCGACTCTAAAGTCATACAAAACATGCTTTCAAACATTCAAAACATACCCTCAAACTCTTATCAATTCATGTCAAAACATAACTATATCAAAATTTATATTTTGGAGGGGATGTGGAAACTATTTATCTTGAACCTACTTACAGAAGTTTCAATCTCAAAAATCCACAATTCCTACTTGAACTAAGTTCAATCTTTCAGGTACCTTAACATAACCACTGCTTCATACTCAAACCAAATTCTAACTTCAAGGTCTAAAACCTATCTAAGACTCACTCAATCTCATCTACCCAAGTTTCTCACTGAAAAGAAATTTTCTGCAATACACAATAGAAAAAATAGGGTTCTTGAACTAAAAAGGAAGCACTAAAAAAACGTTGGGAAAAAAACTCCCTTTAACCTCAATACACGCTAAAAACAGTAAAACCAAAGCTTTCCGAAACATGATAAAATACCAAACAATTTTCAATTACAACCCTTAAAACCTTCAAAACTATCCTAAACTATGGACAAACAAAACAGAAAAATGTATTCTCCATAAAACAACATTCCTCAAGACTTTAACACAGAAGAAAATAAGGTTTTCCACTTTTTTAACACATAATCAGATCTGTAAAGTGTGATAAAACTGCTGTAAAAACATTAAGAACATAAATTCTTTTTCATTTTAAAAAAAGTTAAAATACCAGATACTGATTTCTTTGGAAGATTGGTTCCTCCATAAAAACTTTCATTTGAGGGATAGTGTTATTATGTAAAACTAGATCCTCGTGATCCATAACTTGAGCTGGAACCTCCTCATAAGTCGAATCTTCCTTCAGTTGCAATGTTGCATAGCATGACACATGGGAAATGTCTGCAATATACTTTTGAAGCATGGAGACATGGAAAGTATTATGGCCGAGCAATTAAGAGAGCCATACACCAGTACACCCACCTTTTACAAAATATCAAGAGATCCAGTAAACCTTGGGCTAAGCTTCCTTTTCCTTCCCGAACTTCAAGATTCATTTCAACGGCAAGACTTTCAAAAACACCATATCTTAAACTTCAAAATTTAGTTCTTTTCTTCTGATATCAACATAGTTTTTCTTGATAAGGATATTTTTCAGGCTTTATGAGAATCAAAGAGTCCTAAAAGAATCAAATATCCTTGTTTGGATATTGATGTATGGCTCTCTTAATTGCTCGGCCACGTTACAGCTCAAACTTCAGCACGCTACCTTTCTCCTACAATCTGCCCCTAGGACTTACAACATTTTCTTTTTGATTGTTCATTCTCTAATTGTTGTTCATGGAAACTATTTGCTTTCTTTAATCTCCATTGAGTTTTTGGCAACTCAGTTTGGGAGGAAAACATTGTTCAAGTCTTGGTTGGTCCTCTTTTGTCCTCTAAAACTCAGCTGTTGTGGTCAAAGACAGTCTTAAGCCTTGATTTCAGAAAATTGGTTTCAGCATAATTAGAGGGTGTTTCATGACAAGTCTATAGATTGGTCAGATTGTTTTGGTTTAGCTCGTCTCTGAGCATCATCATGGTGTTCTCAATCCAAAGCTCATATTGATTACTCCACACAGAACATAGGTTTAAATTGGAGTGCTTTCATTACTTCAAATTAATTTATGTATCTTTGTATTTTATTTGAGATATTTGATATCTTGTATTTTCGAGCAGTAGACTATTTTCATTAAGTCAATGAAAAGTTTTGCTTTCTTTTTATTAAAAAAGATATCAACATAACTTTTCTGTCAACTTTGAGCTGTCTCCATTATTTGCTTAATTGAGCTGATGGCGTCATTAGCTTTATGCACTTACTCGGGTCCCAAAATCCAACTCTTTCCTAGTTTAGTCGCATTGATTGTTGACCTACACTTATGCCCTTAGAGTGCCTCAAAAGGTGCCATTCCAATAGTTTCTTGAGAGCTGTTATTATAATAAAACTCTATTAGATGCAAATGTTACACCCAACTTCCCTGAAAGTCCAAAGCACTTGAAGCATAATCTCCACTATTTGAATTGTCCTTTCCATTTGACTGTCTGTTGGGGGTGGAACAAGGTATTGTAATAGTCTCGTGCCTAAAGCCTTATGCACACTTTTGTTTAGATGTAATCTTTGGATCTCAAGTCTGACACTATAGATACATTTTAGAATTGGTAGAAATTTTTTCATGCCATCTTTTGTAGAATCAGTGTTTTAAAAAGCCCTCTTAGGCACGTGTCTAGGCTCATGGCGCATGGCGCATGTTTGGTGCCTTGTCTTGAAAAGGCGAGACTCACAAAATAAGGCGCACCTTTGTGAAGCTCCAAGGCTCAAAGCCTTGAGCCTGGGTTTTCATTATTTTTAACAAATAGTAATAGTTAGGGTTCTCATTTCTTTATTAACTAAAAAAATCAAATTTATGAAGGCGACATTTAAAATTTCATGTGTTTAGGGTTCTTTTACCCCTCCATATTTCCACTTCAACTATGCTTACTCTTCTTAATGTAGTACTTTTTTTTTTGCGCCTTACATAAGTCCCAAAAGATTATTGTGCTTTATGGCGCCTAACACTGGGTAAAATGGTACATTTGCAAATGCAAACCACCTTGCTGATAAATACAAATGGAATAATCCCTGGAAACATGTTTCAATTGGCTTGATAAATCGAGTATCAAGAAAATAACTAGCTTGATAAACCATTGCTAATTGCCCTTCACTGTTTGTACTTATACCTTTTTTGTGCGGACAATTTTATGCTAACTTTCTAGTTTGCATTTTTCTTTCTCTTGTACAGAAGGAATCACCTCTAGGTTTGGTCACCCAATCTGCTCATCCAGGTAAAATTGTTTGAATTATTTGGCTAGTTGTGTGCCATCATTGACTTGCATAATTAGCAATATCAATGATCCTGGTTGGGAGAAAGACCACGCTGTAATATGTCTGTGTTGTTATGTCTTGTACCAAGGGAATTAGTCAAAACAATATATATGGTGTATTCCACTTGTAATTTTCACTGTGGCTGAGGCTATTGTGACAATTGGAACTGTGCATTCTTGAGAATGGATATGCACTGTTGATATACAACATTTATCATCGATTGACATGTAGAAGTGGATAATATCATTGCTCACCTTTCTCCTTAGAGATGCTATCGTTTGTACCCTATATTGATTGAATTAATTCAGATGTTACCTGCTAGGCTGCCCCTTAATGCAGCCATGGTTTTAGCAGTTTCGGAGCCCTTATAACCTGTTTTACGTTTTTCTGACTGCAGCTCGTTTCTCCCCCGATGACAAATACTCTAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCTACACAGCAGCCACCTCCAAAGTACTGAACTCAACACATTCTCAAATCAACTCTATGGCACTTCTCAAGTGTTTGTTTCCCAAACCCCCATCAATAGTAGATTGTGACTTGGTTAAACTTTGCTAGGTAGTTTTTGCCTTTTCTTTCTATGGCTTGTAATTGAGCTGTAAAGCACAAATCACTGTTGAACCTTTCTTTAAGCTTGTCATCAGCTTTATATTTGTATTGAACTTTATTTTACTGAAAGCAAACTTATCTACTTTGAAGATCTGGTTTTAATGCAAGATGATTGGCCTTTTTTCATACTTTTTTCTCCTTTTGTACAACATTGCAGTTGTCAAGCACCATTGTCTGCTGATCCTTTCTAAAGTTTTTGGCCTTGTTATATGTATTTAACCTTATTTATTGACAATTAATTGAGCCTAAACCATAAGGTGGTAGTCCCCAATTCCCTTGGTTGGTTTCGATGTTCAAGTTCCGTCCTCGTCCTCATCCTGGTTTGCAATTCAAGATGTATGCACCAGAATTGGAAAAATTACAACTCATGAGAATTCGTCTCTTTGCATAACTAAGGTACGCAAGGTTCACTTTATGATCCATTGATTGGCAGAACTATAATACTAGAGAGGATTGTTTGCTTCTCCTTGGCCTGTGAATATGGTTTTTGTTTAGTTGGATTTGGATTTGAATTTTGAAGAAGCATGTTCAAATGGGTTATAGGACGTGGGAGTTTGGGCTTAAGTGGCCATATTGCTTGCAGAAATATAGCTAAATGGTTAGGTACTAAACTCCTCAGCCCCACTCAAGGAATAGCGTATGAAACAGAATCATCATCCTCAACTAAATTACTATTTTATTTGTCATAGGACTTTTGAAAATTGACACGAGTTACTAATATATACTTATAGTTCTACAATGGGTGAGTGCGAAGATTCCAACTTTTAAACTATTAGTTGATATATTTTTTAACTAATTGAACTATATTTAAGTTAGCATGATTGTGATATATCTTATTAGAGGAACAAAATTTAAAAATTTCAATCAGATCACAAAGCGGGCCAAAGTTGTAGAACAAAGGCATAATGTCACATGCGATAAACCGTGTTTGTCGAATTATTGTCTTATGATAAACTGTGTTGAATTATTGTTGTGGTCGTCTTTCAAATAAATGACCCTTTTGAATGAGGTTTTCATGAAAAAGAAAATGTAGAAAAAGAAAAATAGAATACGAAATGAATCTTCTTGAAACGATTGATGGAAGTATTATAACCCTATCATTCATATAGTTTTTAAAAAAGGAAGAGGAGGAACATGGCACCCAATGAAGAGAACCAAAACCTGTAGCCCTTTTTTTCCATCACAAAAGCACACTCTAACATGATCAATGGTTCTTTAATTTCCCAAAAGATATGATTTGATATACATGAGTCCAAATCACCAAGAGTTTTTTTCATAAAGTAATTTAATTAACATAATTTTCTTTTCTTATTCTTCTTTTAATTACAATTCAAAAGGTACTTTAGAAAAATAATTATAAAACAAATGTGGTTAAGATTAAAAAGAAAAAAGAAAAAGAAAAAGTGATTTACAAAAGGGGCCAATTGAAGCACAATATAGAAACTTTTATTTATGTTATTTTTAGCTTCACATATATGAACATGACCTATTTTAAACTAAACATATATAGTTGTTCTAAAAAAAAAAATAATAATAAAATAAAAAAAGTACATAATTTAAAACAGCACTTAATTATTTTGTCAAAAACTATGTGCTGAAAATATCTTAATAATCACTCTATTTCCGAAATAAATCTAAACAAAGAGACAAAAATAATGTAAAATTCAAGCTTCCACTATTTAGACATAGGTGTCAACTTTGAGCCTATCCCTTTATATATTATGTTAATTAGATCCTAATCCAATATTTAATTGCAAAATTAGGCACAAAATCGAATAATCATTGGAGTATTAGAATGGATTAATAGTTCGTCTTAATTGGAAAGGTCTTTGAAATTCACTTGACATATATATTTTATATACGTGTAGACAATAGAGTGACACAAGTGTTGGATTGTGTAAGATTTGTTGCACATGGATTCATCAATGGTTGCTTCAATTAATATCTTTCTCTTCTTTTTTGGAATTAAACAAACTCTCTAAATGTAATTTCCTTTCTTGTTTTCTTAATTAAATTCTTTTTCCATGGGAGAGAGACTTTTATTACAAGGAACTTTCAAAGTTTCAAATTGTGTTGAAATTAGTTACTACAAAAGTTTGACACCTTGATGATGATGGGAGAACCAAACATGTGTTTTGCATTAATATTTGCCCCAAAGTCCATGAAGAAAAAGAGAAACGAGTAAACTTACAAAGCTTTCGGTTCTCGTTATCTTTTAGAGTTTTGTCTAATAAATTTTTGAACTTTAAAATATATTTAAGCTCTCAAACTTTCGATGTTGTGTGTGTCGTAGGTAAGTTTCGAACTTTTAAAAGCGTCTAACACATCCTCGAGTTTATATTTTGTTTTTGATTGGTTTGTAAACTTGCAGTTGTATATCTAATAGGTCTTTGATTCGTGAAATATTTTTAAAGTTTAAGAGTTATTAGAGGTATAATATTCTTTTGAGTTCATAGTTTCCTCCGTGGATTAGTCATAGTCTTTGTATTTTTGAAATCTTCTCTAAACCCTAAACCCCCAATTTTCTTCATCACTTTGCTTGCCCTCTAAGTTAAAAAAAAATTGTCCTAAAACTCACCCCAATTTATGAAACACTTAGGTTTATCCAATTGACACGTGGAAACTACGGAAGTTTTGA

mRNA sequence

ATGAGAGTCCAAACAACTAGACAACCCAATCTAGGACCCGCCCTTAGTCTGTCTGCCGTTCATCTCCTCGCCTGGCGTTGGTCCTCCGTCACCCTCGCCGTTCGTTTAGTGCCGCACCACCGCCGTTCTCCGTCGCGCCGCCGGACGTCCTGCACCAAAGTTGAGTATTATCAACGATTCTACACCACAAAGAAGGAATCACCTCTAGGTTTGGTCACCCAATCTGCTCATCCAGCTCGTTTCTCCCCCGATGACAAATACTCTAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCTACACAGCAGCCACCTCCAAAAATTGGAAAAATTACAACTCATGAGAATTCGTCTCTTTGCATAACTAAGGTTTATCCAATTGACACGTGGAAACTACGGAAGTTTTGA

Coding sequence (CDS)

ATGAGAGTCCAAACAACTAGACAACCCAATCTAGGACCCGCCCTTAGTCTGTCTGCCGTTCATCTCCTCGCCTGGCGTTGGTCCTCCGTCACCCTCGCCGTTCGTTTAGTGCCGCACCACCGCCGTTCTCCGTCGCGCCGCCGGACGTCCTGCACCAAAGTTGAGTATTATCAACGATTCTACACCACAAAGAAGGAATCACCTCTAGGTTTGGTCACCCAATCTGCTCATCCAGCTCGTTTCTCCCCCGATGACAAATACTCTAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCTACACAGCAGCCACCTCCAAAAATTGGAAAAATTACAACTCATGAGAATTCGTCTCTTTGCATAACTAAGGTTTATCCAATTGACACGTGGAAACTACGGAAGTTTTGA

Protein sequence

MRVQTTRQPNLGPALSLSAVHLLAWRWSSVTLAVRLVPHHRRSPSRRRTSCTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKIGKITTHENSSLCITKVYPIDTWKLRKF
Homology
[Close]
BLAST of ClCG07G001140 vs. NCBI nr
Match: XP_011651438.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_021665893.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hevea brasiliensis] >XP_027352960.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Abrus precatorius] >XP_031738537.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_038718649.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii] >PIN05065.1 H/ACA snoRNP complex, subunit NOP10 [Handroanthus impetiginosus] >KAE8650652.1 hypothetical protein Csa_011605 [Cucumis sativus] >KAF5738956.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 63

[Close]
BLAST of ClCG07G001140 vs. NCBI nr
Match: XP_008447412.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo] >XP_016900440.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 63

[Close]
BLAST of ClCG07G001140 vs. NCBI nr
Match: KAF2292707.1 (hypothetical protein GH714_027182 [Hevea brasiliensis])

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-18
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKIGK 113
           + YTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQQPPPK G+
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQQPPPKNGQ 66

[Close]
BLAST of ClCG07G001140 vs. NCBI nr
Match: XP_022963952.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022963953.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022967558.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_022967559.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_023553702.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo] >XP_023553703.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGLV QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Sbjct: 13  KVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 63

[Close]
BLAST of ClCG07G001140 vs. NCBI nr
Match: KAG6606368.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ PPPK
Sbjct: 38  KVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPK 88

[Close]
BLAST of ClCG07G001140 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-18
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 51  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP 108
           C   E  ++ YTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Sbjct: 5   CYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAP 61

[Close]
BLAST of ClCG07G001140 vs. ExPASy Swiss-Prot
Match: Q54J26 (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=nop10 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 58  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP 108
           QR YT KKESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQQPP
Sbjct: 12  QRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPP 61

[Close]
BLAST of ClCG07G001140 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-13
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 58  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP 109
           +R YT KK  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQQP P
Sbjct: 12  ERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62

[Close]
BLAST of ClCG07G001140 vs. ExPASy Swiss-Prot
Match: Q6BQP3 (H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=NOP10 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-12
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 58  QRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 105
           +R YT  K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Sbjct: 12  KRVYTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58

[Close]
BLAST of ClCG07G001140 vs. ExPASy Swiss-Prot
Match: Q9NPE3 (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-12
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 55  EYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP 109
           E   R YT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Sbjct: 9   EQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62

[Close]
BLAST of ClCG07G001140 vs. ExPASy TrEMBL
Match: A0A1S3BHD2 (Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 63

[Close]
BLAST of ClCG07G001140 vs. ExPASy TrEMBL
Match: A0A7J7CYK9 (Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 63

[Close]
BLAST of ClCG07G001140 vs. ExPASy TrEMBL
Match: A0A2G9GIP1 (Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 63

[Close]
BLAST of ClCG07G001140 vs. ExPASy TrEMBL
Match: A0A6A6KVP9 (Nucleolar protein 10 OS=Hevea brasiliensis OX=3981 GN=GH714_027182 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKIGK 113
           + YTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQQPPPK G+
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQQPPPKNGQ 66

[Close]
BLAST of ClCG07G001140 vs. ExPASy TrEMBL
Match: A0A2P2IS35 (Nucleolar protein 10 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 59  RFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 110
           + YTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK
Sbjct: 13  KVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPK 63

[Close]
BLAST of ClCG07G001140 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 51  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP 108
           C   E  ++ YTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Sbjct: 5   CYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAP 61

[Close]
BLAST of ClCG07G001140 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-17
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 51  CTKVEYYQRFYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPP 108
           C   E  ++ YTT KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P
Sbjct: 5   CYINEKGEKVYTT-KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAP 60

The following BLAST results are available for this feature:
BLAST of ClCG07G001140 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651438.12.4e-1894.12H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_021... [more]
XP_008447412.12.4e-1894.12PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo]... [more]
KAF2292707.12.4e-1888.89hypothetical protein GH714_027182 [Hevea brasiliensis][more]
XP_022963952.13.1e-1894.12H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_... [more]
KAG6606368.13.1e-1894.12H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr... [more]
BLAST of ClCG07G001140 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93XX85.5e-1877.19H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O... [more]
Q54J261.4e-1376.00H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 G... [more]
Q6DRH55.3e-1370.59H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S... [more]
Q6BQP32.0e-1274.47H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain A... [more]
Q9NPE34.5e-1264.81H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 ... [more]
BLAST of ClCG07G001140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BHD21.1e-1894.12Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1[more]
A0A7J7CYK91.1e-1894.12Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=... [more]
A0A2G9GIP11.1e-1894.12Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3... [more]
A0A6A6KVP91.1e-1888.89Nucleolar protein 10 OS=Hevea brasiliensis OX=3981 GN=GH714_027182 PE=3 SV=1[more]
A0A2P2IS351.1e-1894.12Nucleolar protein 10 OS=Rhizophora mucronata OX=61149 PE=3 SV=1[more]
BLAST of ClCG07G001140 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20490.13.9e-1977.19nucleolar RNA-binding Nop10p family protein [more]
AT2G20490.23.6e-1775.44nucleolar RNA-binding Nop10p family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.28.40H/ACA ribonucleoprotein complex, subunit Nop10coord: 46..100
e-value: 8.7E-13
score: 50.0
NoneNo IPR availablePANTHERPTHR13305:SF1H/ACA RIBONUCLEOPROTEIN COMPLEX, SUBUNIT NOP10-RELATEDcoord: 61..109
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PFAMPF04135Nop10pcoord: 59..98
e-value: 3.8E-15
score: 55.6
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 61..109
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilySUPERFAMILY144210Nop10-like SnoRNPcoord: 56..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G001140.2ClCG07G001140.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0006364 rRNA processing
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0030515 snoRNA binding