ClCG07G000270 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG07G000270
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionchloroplast stem-loop binding protein of 41 kDa a, chloroplastic
LocationCG_Chr07: 321399 .. 323913 (+)
RNA-Seq ExpressionClCG07G000270
SyntenyClCG07G000270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATGTAAGACTATATATTTTTTTTCTTTTTTCTTTTTTTTCCAAGAAACACTAATAATTAACTATGTAGAATTTAGAAATGAGATTTTTCCCCCTTTTTCTAACAAAATGCTCAACTGTCAAATTTTCAAACTTAAATTTTAACAAGATTTGATCTGATAGAAACATGAATAATAAAAAAATATAGGAGCTACATTCACATTTGCAAAGTGCGTATATTGGGCATTGCAAAATGATTGGCCGTTATCATATATCATCTATCTGGTAAACTAAAAGAGCTGGTTCTCATCTCACCATAGTCCAGCTCAAAATTCTTTGATTCCATGGCTGCTCTTGCTTCCTCATCTTCCCTCTTCTCCTCTAAGCCCTCCATCCATCTTCCATCCTCCCTTTCTCCTTCTTTTCCTCCTCTCTCACTCTCTCCTATCTCTTACCCTTCTGCTCTTTCATCTTCTTTCTCCATTTCCCATTCTTTTCTCTCTTACCCTTCATCTTCTCGACCCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTCCTGACAAGAAGAAAGTCTTGATTGTCAACACAAACAGCGGAGGACATGCAGTCATTGGCTTCTATTTTGCAAAACAGCTTCTGGGCTCCGGCCATGAGGTCACAATCTTGACTGTCGGTGAAGAGAGTTCTGATAAGATGAAGAAACCCCCATTCAACAGATTCTCAGTTAGTAATTAAAAGCTTTTCTTTTAGAAAATTTTTTGTTCTGATAAATGAGTGGTGGCTAACTATCTGTAATCTGTGTGTTTTCTTTTGGGGTGTCGTTTAGGAAATTGTGAGTGGTGGAGGCAAGACAGTATGGGGAGATCCAGCAGAAATTGGAAAGGTTCTGGCAGGAGCATCATTTGATGTGGTATTAGATAACAATGGCAAAGACATTGATACTGTGAGGTTTGTGACTTCATCATTTCCAACTAAATCTGAATTTCTACTACTTTTTCCCATGCTCTCTGGTGGATTGTTTGATATTTTTACATTTAAGAATTTTATAGGTTTCTTGATATCAATCCACCTTTTAAGCATGATAATAAACATAAATAAAATCTCTCTGTTTATGGGGGATGAAAATCATATGCCAGACAAACCAAATCATGAAGATTACTATTTTGTTGACAGGTAAGGAGATTTAAACCTTAAATAAACTAGAATCATGCTAAAATTCTATCTAAGCTGCCATTTGGCCTATATTTTGACACAGGCCTGTTATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGTAAACATTACAGTTTCAATATGATCCTATCAGCATATATAATATATAGATTTCGATTTAGATACATTTTCTCAACCAAGAAGGCAGATACTTACAGAATGCTAATAATTCTGCACCATTATTATGACAGGATCCTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAAGAATATATTGCAAAGGTTTTCGGCAGCTGGGCTATCTTCCGTCCACAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGTACGAGCACACATCGTTATAAACCTGTAAAGTATTTAGACATTTCTAACTTGATTAATGAGCTCATGGATTTGTATATCTCCAATGCAGGAATCGTCCGGGATAGACCGGTTCCAATCCCAGGCTCCGGTATGCAGCTGACAAACATTGCACATGTCAGGGACTTGTCTTCTATGTTGACATTGGCTGTAGAGAAGCCGGATGAAGCACACTCTAACATATTCAACTGTGTAAGCGATCGTGCCGTGACGCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGCCGTCCAGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGGTTGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGGTGAGTAAAATGGAATAGTTTCTTTGGTGCTTGGGGTGTTAACATAAAAGATTCAGAATTTTGAGATAAGTGAGATAGAAGTTTACTAAACAAAGGTTTGATATCAACTTTAAGACATCCATACCTGTTGTTTTCTCATTCTGCAGCATTTCTATGCGGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAGCTACCACAAATCTTCCTGAAGATTTGAAGGAACGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAGCCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGACCATTCTTCCAATAATTGTGCTAAACGGTGCTGTCCTTACCGTACTTTTGTATATGACTATATGTATGCTCATTTATTGTACTTCTATCAACTTACCAAATAAAGTGATAAAGAGGTGAAGTTCTGTTGCCCCAATTTTGATTTTTGCATTTACAGAAGAAACCAACGAAAGTAGCATCCCTTGCATATTCCCAAGCTCCCCC

mRNA sequence

ATGCCCATCTCAAAATTCTTTGATTCCATGGCTGCTCTTGCTTCCTCATCTTCCCTCTTCTCCTCTAAGCCCTCCATCCATCTTCCATCCTCCCTTTCTCCTTCTTTTCCTCCTCTCTCACTCTCTCCTATCTCTTACCCTTCTGCTCTTTCATCTTCTTTCTCCATTTCCCATTCTTTTCTCTCTTACCCTTCATCTTCTCGACCCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTCCTGACAAGAAGAAAGTCTTGATTGTCAACACAAACAGCGGAGGACATGCAGTCATTGGCTTCTATTTTGCAAAACAGCTTCTGGGCTCCGGCCATGAGGTCACAATCTTGACTGTCGGTGAAGAGAGTTCTGATAAGATGAAGAAACCCCCATTCAACAGATTCTCAGAAATTGTGAGTGGTGGAGGCAAGACAGTATGGGGAGATCCAGCAGAAATTGGAAAGGTTCTGGCAGGAGCATCATTTGATGTGGTATTAGATAACAATGGCAAAGACATTGATACTGTGAGGTTTGTGACTTCATCATTTCCAACTAAATCTGAATTTCTACTACTTTTTCCCATGCTCTCTGGTTTCTTGATATCAATCCACCTTTTAAGCATGATAATAAACATAAATAAAATCTCTCTGTTTATGGGGGATGAAAATCATATGCCAGACAAACCAAATCATGAAGATTACTATTTTGTTGACAGGCCTGTTATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATCCTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAAGAATATATTGCAAAGGTTTTCGGCAGCTGGGCTATCTTCCGTCCACAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGTACGAGCACACATCGTTATAAACCTGTAAAGTATTTAGACATTTCTAACTTGATTAATGAGCTCATGGATTTGTATATCTCCAATGCAGGAATCGTCCGGGATAGACCGGTTCCAATCCCAGGCTCCGGTATGCAGCTGACAAACATTGCACATGTCAGGGACTTGTCTTCTATGTTGACATTGGCTGTAGAGAAGCCGGATGAAGCACACTCTAACATATTCAACTGTGTAAGCGATCGTGCCGTGACGCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGCCGTCCAGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGGTTGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCGGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAGCTACCACAAATCTTCCTGAAGATTTGAAGGAACGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAGCCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGACCATTCTTCCAATAATTGTGCTAAACGGTGCTGTCCTTACCGTACTTTTGTATATGACTATATGTATGCTCATTTATTGTACTTCTATCAACTTACCAAATAAAGTGATAAAGAGGTGAAGTTCTGTTGCCCCAATTTTGATTTTTGCATTTACAGAAGAAACCAACGAAAGTAGCATCCCTTGCATATTCCCAAGCTCCCCC

Coding sequence (CDS)

ATGCCCATCTCAAAATTCTTTGATTCCATGGCTGCTCTTGCTTCCTCATCTTCCCTCTTCTCCTCTAAGCCCTCCATCCATCTTCCATCCTCCCTTTCTCCTTCTTTTCCTCCTCTCTCACTCTCTCCTATCTCTTACCCTTCTGCTCTTTCATCTTCTTTCTCCATTTCCCATTCTTTTCTCTCTTACCCTTCATCTTCTCGACCCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTCCTGACAAGAAGAAAGTCTTGATTGTCAACACAAACAGCGGAGGACATGCAGTCATTGGCTTCTATTTTGCAAAACAGCTTCTGGGCTCCGGCCATGAGGTCACAATCTTGACTGTCGGTGAAGAGAGTTCTGATAAGATGAAGAAACCCCCATTCAACAGATTCTCAGAAATTGTGAGTGGTGGAGGCAAGACAGTATGGGGAGATCCAGCAGAAATTGGAAAGGTTCTGGCAGGAGCATCATTTGATGTGGTATTAGATAACAATGGCAAAGACATTGATACTGTGAGGTTTGTGACTTCATCATTTCCAACTAAATCTGAATTTCTACTACTTTTTCCCATGCTCTCTGGTTTCTTGATATCAATCCACCTTTTAAGCATGATAATAAACATAAATAAAATCTCTCTGTTTATGGGGGATGAAAATCATATGCCAGACAAACCAAATCATGAAGATTACTATTTTGTTGACAGGCCTGTTATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATCCTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAAGAATATATTGCAAAGGTTTTCGGCAGCTGGGCTATCTTCCGTCCACAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGTACGAGCACACATCGTTATAAACCTGTAAAGTATTTAGACATTTCTAACTTGATTAATGAGCTCATGGATTTGTATATCTCCAATGCAGGAATCGTCCGGGATAGACCGGTTCCAATCCCAGGCTCCGGTATGCAGCTGACAAACATTGCACATGTCAGGGACTTGTCTTCTATGTTGACATTGGCTGTAGAGAAGCCGGATGAAGCACACTCTAACATATTCAACTGTGTAAGCGATCGTGCCGTGACGCTTGATGGAATGGCCAAGCTATGTGCTCAAGCAGCAGGCCGTCCAGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGGTTGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCGGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAGCTACCACAAATCTTCCTGAAGATTTGAAGGAACGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAGCCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGA

Protein sequence

MPISKFFDSMAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSRPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKSEFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGSGNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFELDDKILESLKVPVAA
Homology
[Close]
BLAST of ClCG07G000270 vs. NCBI nr
Match: XP_038888331.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 718.4 bits (1853), Expect = 4.3e-203
Identity = 386/494 (78.14%), Postives = 394/494 (79.76%), Query Frame = 0 

Query: 10  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSRP 69
           MAALASSSSLFSSKPSIHLPSSLSPSFP LSLSPIS+PS LSSS SISHSFLSYP S RP
Sbjct: 1   MAALASSSSLFSSKPSIHLPSSLSPSFPLLSLSPISHPSPLSSSLSISHSFLSYP-SFRP 60

Query: 70  SNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK 129
           SNVCSFSVRA+S DKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK
Sbjct: 61  SNVCSFSVRATSLDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK 120

Query: 130 KPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKSE 189
           KPPFNRFSEIVSGGGKTVWGDPAEIGKV+AGASFDVVLDNNGKDIDTV            
Sbjct: 121 KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTV------------ 180

Query: 190 FLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKSS 249
                                                             RPVIDWAKSS
Sbjct: 181 --------------------------------------------------RPVIDWAKSS 240

Query: 250 GVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGSG 309
           GVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIA+VFGSWAIFRPQYMIGSG
Sbjct: 241 GVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSG 300

Query: 310 NNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLTN 369
           NNKDCEEWFFDR                              IVR+RPVPIPGSGMQLTN
Sbjct: 301 NNKDCEEWFFDR------------------------------IVRNRPVPIPGSGMQLTN 360

Query: 370 IAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKA 429
           IAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPV+IVH+DPKA
Sbjct: 361 IAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVDIVHFDPKA 401

Query: 430 VGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFEL 489
           VGVDAKKAFPFRNMHFYAEPRAAQDILGWK TTNLPEDLKERFEEYVKIGRDKKPIKFEL
Sbjct: 421 VGVDAKKAFPFRNMHFYAEPRAAQDILGWKGTTNLPEDLKERFEEYVKIGRDKKPIKFEL 401

Query: 490 DDKILESLKVPVAA 504
           DDKILESLKVPVAA
Sbjct: 481 DDKILESLKVPVAA 401

[Close]
BLAST of ClCG07G000270 vs. NCBI nr
Match: XP_038887630.1 (LOW QUALITY PROTEIN: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 704.9 bits (1818), Expect = 5.0e-199
Identity = 379/494 (76.72%), Postives = 391/494 (79.15%), Query Frame = 0 

Query: 10  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSRP 69
           MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPIS+PS LSSS SISHSFLSYPSS RP
Sbjct: 1   MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISHPSPLSSSLSISHSFLSYPSSFRP 60

Query: 70  SNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK 129
           SNVCSFSVRA+S D KKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK
Sbjct: 61  SNVCSFSVRANSLD-KKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK 120

Query: 130 KPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKSE 189
           KPPFNRFSEIVSGGGKTVWGDPAEIGKV+AGASFDVVLDNNGKDIDTV            
Sbjct: 121 KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTV------------ 180

Query: 190 FLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKSS 249
                                                             RPVIDWAK  
Sbjct: 181 --------------------------------------------------RPVIDWAKXD 240

Query: 250 GVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGSG 309
           GVKQFLFISSAGIYKPTDEPPHVEGDPVK +AGHVGVE+YIA+VFGSWAIFRPQYMIGSG
Sbjct: 241 GVKQFLFISSAGIYKPTDEPPHVEGDPVKVNAGHVGVEKYIAEVFGSWAIFRPQYMIGSG 300

Query: 310 NNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLTN 369
           NNKDCEEWFFDR                              IV++R VPIPGSGMQLTN
Sbjct: 301 NNKDCEEWFFDR------------------------------IVQNRRVPIPGSGMQLTN 360

Query: 370 IAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKA 429
           IAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG  V+IVH+DPKA
Sbjct: 361 IAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGCLVDIVHFDPKA 401

Query: 430 VGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFEL 489
           VGVDAKKAFPFRNMHF+AEPRAAQDILGWK+TTNLPEDLKERFEEYVKIGRDKKPIKFEL
Sbjct: 421 VGVDAKKAFPFRNMHFHAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDKKPIKFEL 401

Query: 490 DDKILESLKVPVAA 504
           DDKILESLKVPVAA
Sbjct: 481 DDKILESLKVPVAA 401

[Close]
BLAST of ClCG07G000270 vs. NCBI nr
Match: XP_022967430.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima])

HSP 1 Score: 693.3 bits (1788), Expect = 1.5e-195
Identity = 371/495 (74.95%), Postives = 387/495 (78.18%), Query Frame = 0 

Query: 10  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 69
           MAALA SSSSLF+SKPSIHLPSSLSP     S+SPIS PSAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 70  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 129
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 130 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKS 189
           KKPPFNRFSEIVS GGKTVWGDPAE+GKV+AGASFDVVLDNNGKDID+V           
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV----------- 180

Query: 190 EFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKS 249
                                                              RPVIDWAKS
Sbjct: 181 ---------------------------------------------------RPVIDWAKS 240

Query: 250 SGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGS 309
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIA+VF SWA+FRPQYMIGS
Sbjct: 241 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 300

Query: 310 GNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLT 369
           GNNKDCEEWFFDR                              IVRDRP+PIPGSGMQLT
Sbjct: 301 GNNKDCEEWFFDR------------------------------IVRDRPIPIPGSGMQLT 360

Query: 370 NIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 429
           NIAHVRDLSSMLTLAVEKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK
Sbjct: 361 NIAHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 403

Query: 430 AVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFE 489
            VGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRDKK IKFE
Sbjct: 421 PVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFE 403

Query: 490 LDDKILESLKVPVAA 504
           LDDKILESLKVPVAA
Sbjct: 481 LDDKILESLKVPVAA 403

[Close]
BLAST of ClCG07G000270 vs. NCBI nr
Match: XP_022963688.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata])

HSP 1 Score: 692.2 bits (1785), Expect = 3.3e-195
Identity = 371/495 (74.95%), Postives = 387/495 (78.18%), Query Frame = 0 

Query: 10  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 69
           MAALA SSSSLF+SKPSIHLPSSLSP     SLSPIS  SAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSR 60

Query: 70  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 129
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 130 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKS 189
           KKPPFNRFSEIVS GGKTVWGDPAE+GKV+AGASFDVVLDNNGKDID+V           
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV----------- 180

Query: 190 EFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKS 249
                                                              RPVIDWAKS
Sbjct: 181 ---------------------------------------------------RPVIDWAKS 240

Query: 250 SGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGS 309
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIA+VF SWA+FRPQYMIGS
Sbjct: 241 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 300

Query: 310 GNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLT 369
           GNNKDCEEWFFDR                              IVRDRP+PIPGSGMQLT
Sbjct: 301 GNNKDCEEWFFDR------------------------------IVRDRPIPIPGSGMQLT 360

Query: 370 NIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 429
           NI+HVRDLSSMLTLAVEKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK
Sbjct: 361 NISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 403

Query: 430 AVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFE 489
           AVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRDKK IKFE
Sbjct: 421 AVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFE 403

Query: 490 LDDKILESLKVPVAA 504
           LDDKILESLKVPVAA
Sbjct: 481 LDDKILESLKVPVAA 403

[Close]
BLAST of ClCG07G000270 vs. NCBI nr
Match: KAG6571471.1 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 691.8 bits (1784), Expect = 4.4e-195
Identity = 370/495 (74.75%), Postives = 387/495 (78.18%), Query Frame = 0 

Query: 10  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 69
           MAALA SSSSLF+SKPSIHLPSSLSP     SLSPIS PSAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 70  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 129
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFA+QLLGSGHEVTILTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAEQLLGSGHEVTILTVGEESSDKM 120

Query: 130 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKS 189
           KKPPFNRFSEIVS GGKTVWGDPAE+GKV+AGASFDVVLDNNGKDID+V           
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV----------- 180

Query: 190 EFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKS 249
                                                              RPVIDWAKS
Sbjct: 181 ---------------------------------------------------RPVIDWAKS 240

Query: 250 SGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGS 309
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIA+VF SWA+FRPQYMIGS
Sbjct: 241 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 300

Query: 310 GNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLT 369
           GNNKDCEEWFFDR                              IVRDRP+PIPGSGMQLT
Sbjct: 301 GNNKDCEEWFFDR------------------------------IVRDRPIPIPGSGMQLT 360

Query: 370 NIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 429
           NI+HVRDLSSMLTLAVEKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK
Sbjct: 361 NISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 403

Query: 430 AVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFE 489
           AVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRDKK IKFE
Sbjct: 421 AVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFE 403

Query: 490 LDDKILESLKVPVAA 504
           LDD ILESLKVPVAA
Sbjct: 481 LDDNILESLKVPVAA 403

[Close]
BLAST of ClCG07G000270 vs. ExPASy Swiss-Prot
Match: Q9LYA9 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 3.5e-155
Identity = 309/498 (62.05%), Postives = 347/498 (69.68%), Query Frame = 0 

Query: 10  MAALASSSSLFSSKPSIHLPSSL-SPSFPPLSL-SPISYPSALSSSFSISHSFLSYP-SS 69
           MAAL+SSS  FSSK +  + + L  PS    SL S  S  S+LSSS S S S L++   +
Sbjct: 1   MAALSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRT 60

Query: 70  SRPSNVCSFSVRASS-PDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESS 129
           SR  +   F+V+ASS  +KK VLIVNTNSGGHAVIGFYFAK+LL +GH VTILTVG+ESS
Sbjct: 61  SRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESS 120

Query: 130 DKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFP 189
           +KMKKPPFNRFSEIVSGGGKTVWG+PA +  V+ G +FDVVLDNNGKD+DTV        
Sbjct: 121 EKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTV-------- 180

Query: 190 TKSEFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDW 249
                                                                 RPV+DW
Sbjct: 181 ------------------------------------------------------RPVVDW 240

Query: 250 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYM 309
           AKSSGVKQFLFISSAGIYK T++PPHVEGD VKADAGHV VE+Y+A+ FG+WA FRPQYM
Sbjct: 241 AKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYM 300

Query: 310 IGSGNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGM 369
           IGSGNNKDCEEWFFDR                              IVRDR VPIPGSG+
Sbjct: 301 IGSGNNKDCEEWFFDR------------------------------IVRDRAVPIPGSGL 360

Query: 370 QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHY 429
           QLTNI+HVRDLSSMLT AV  P+ A  NIFNCVSDRAVTLDGMAKLCA AAG+ V IVHY
Sbjct: 361 QLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHY 406

Query: 430 DPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPI 489
           DPKA+GVDAKKAF FRNMHFYAEPRAA+D+LGW++ TNLPEDLKERFEEYVKIGRDKK I
Sbjct: 421 DPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEI 406

Query: 490 KFELDDKILESLKVPVAA 504
           KFELDDKILE+LK PVAA
Sbjct: 481 KFELDDKILEALKTPVAA 406

[Close]
BLAST of ClCG07G000270 vs. ExPASy Swiss-Prot
Match: Q9SA52 (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.9e-37
Identity = 122/424 (28.77%), Postives = 179/424 (42.22%), Query Frame = 0 

Query: 80  SSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEI 139
           S+  +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     + 
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGK--SPIAKQLPGESDQDF 108

Query: 140 VSGGGKTVW--GDPAE---IGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKSEFLLLF 199
                K +   GD  +   +   L+   FDVV D NG++ + V  +  + P         
Sbjct: 109 ADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPK-------- 168

Query: 200 PMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKSSGVKQF 259
                                                                   ++Q+
Sbjct: 169 --------------------------------------------------------LEQY 228

Query: 260 LFISSAGIYKPTDEPPHVEGDPVKADAGHVG---VEEYIAKVFGSWAIFRPQYMIGSGNN 319
           ++ SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N 
Sbjct: 229 IYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNY 288

Query: 320 KDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLTNIA 379
              EEWFF     HR K                     AG    RP+P+P SG+Q++ + 
Sbjct: 289 NPVEEWFF-----HRLK---------------------AG----RPIPVPNSGIQISQLG 348

Query: 380 HVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAV 439
           HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G P   IVHY+PK  
Sbjct: 349 HVKDLATAF-LNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEF 371

Query: 440 GVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFELD 495
               KKAFPFR+ HF+A    A+ +LGWK   +L E L + +      G  +K   F  D
Sbjct: 409 DFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTD 371

[Close]
BLAST of ClCG07G000270 vs. ExPASy TrEMBL
Match: A0A6J1HUG4 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466971 PE=3 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 7.3e-196
Identity = 371/495 (74.95%), Postives = 387/495 (78.18%), Query Frame = 0 

Query: 10  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 69
           MAALA SSSSLF+SKPSIHLPSSLSP     S+SPIS PSAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 70  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 129
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 130 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKS 189
           KKPPFNRFSEIVS GGKTVWGDPAE+GKV+AGASFDVVLDNNGKDID+V           
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV----------- 180

Query: 190 EFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKS 249
                                                              RPVIDWAKS
Sbjct: 181 ---------------------------------------------------RPVIDWAKS 240

Query: 250 SGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGS 309
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIA+VF SWA+FRPQYMIGS
Sbjct: 241 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 300

Query: 310 GNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLT 369
           GNNKDCEEWFFDR                              IVRDRP+PIPGSGMQLT
Sbjct: 301 GNNKDCEEWFFDR------------------------------IVRDRPIPIPGSGMQLT 360

Query: 370 NIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 429
           NIAHVRDLSSMLTLAVEKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK
Sbjct: 361 NIAHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 403

Query: 430 AVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFE 489
            VGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRDKK IKFE
Sbjct: 421 PVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFE 403

Query: 490 LDDKILESLKVPVAA 504
           LDDKILESLKVPVAA
Sbjct: 481 LDDKILESLKVPVAA 403

[Close]
BLAST of ClCG07G000270 vs. ExPASy TrEMBL
Match: A0A6J1HIM8 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463943 PE=3 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.6e-195
Identity = 371/495 (74.95%), Postives = 387/495 (78.18%), Query Frame = 0 

Query: 10  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 69
           MAALA SSSSLF+SKPSIHLPSSLSP     SLSPIS  SAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSR 60

Query: 70  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 129
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 130 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKS 189
           KKPPFNRFSEIVS GGKTVWGDPAE+GKV+AGASFDVVLDNNGKDID+V           
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSV----------- 180

Query: 190 EFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKS 249
                                                              RPVIDWAKS
Sbjct: 181 ---------------------------------------------------RPVIDWAKS 240

Query: 250 SGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYMIGS 309
           SGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+YIA+VF SWA+FRPQYMIGS
Sbjct: 241 SGVKQFLFISSAGIYKPTDEPPHVEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGS 300

Query: 310 GNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLT 369
           GNNKDCEEWFFDR                              IVRDRP+PIPGSGMQLT
Sbjct: 301 GNNKDCEEWFFDR------------------------------IVRDRPIPIPGSGMQLT 360

Query: 370 NIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 429
           NI+HVRDLSSMLTLAVEKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK
Sbjct: 361 NISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPK 403

Query: 430 AVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFE 489
           AVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRDKK IKFE
Sbjct: 421 AVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRDKKAIKFE 403

Query: 490 LDDKILESLKVPVAA 504
           LDDKILESLKVPVAA
Sbjct: 481 LDDKILESLKVPVAA 403

[Close]
BLAST of ClCG07G000270 vs. ExPASy TrEMBL
Match: A0A5D3E2H3 (Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00590 PE=3 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 5.7e-193
Identity = 373/499 (74.75%), Postives = 385/499 (77.15%), Query Frame = 0 

Query: 10  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHS-FLS-YPSSS 69
           MAAL  SSSLFSSKPSI+ PS +SPSF PLSLSPIS  S +SSSFSISHS FLS Y SSS
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSS 60

Query: 70  ---RPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEES 129
              RPS VCSFSVRASS  KKKVLIVNTNSGGHAVIGFYFAK+LLGSGHEVTILTVGE+S
Sbjct: 61  SSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQS 120

Query: 130 SDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSF 189
           SDKM KPPFNRFSEIVSGGGKTVWGDPAEIGKVL GASFDVVLDNNGKDIDTV       
Sbjct: 121 SDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTV------- 180

Query: 190 PTKSEFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVID 249
                                                                  RPVID
Sbjct: 181 -------------------------------------------------------RPVID 240

Query: 250 WAKSSGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQY 309
           WAKSSGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+Y+A+VF SWAIFRPQY
Sbjct: 241 WAKSSGVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQY 300

Query: 310 MIGSGNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSG 369
           MIGSGNNKDCEEWFFDR                              IVRDRP+PIPGSG
Sbjct: 301 MIGSGNNKDCEEWFFDR------------------------------IVRDRPIPIPGSG 360

Query: 370 MQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVH 429
           MQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV+DRAVTLDGMAKLCAQAAGRPVNIVH
Sbjct: 361 MQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAGRPVNIVH 407

Query: 430 YDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKP 489
           YDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK+TTNLPEDLKERFEEYVKIGRDKK 
Sbjct: 421 YDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSTTNLPEDLKERFEEYVKIGRDKKA 407

Query: 490 IKFELDDKILESLKVPVAA 504
           IKFELDDKILESLKVPVAA
Sbjct: 481 IKFELDDKILESLKVPVAA 407

[Close]
BLAST of ClCG07G000270 vs. ExPASy TrEMBL
Match: A0A1S3BLW3 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491274 PE=3 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 5.7e-193
Identity = 373/499 (74.75%), Postives = 385/499 (77.15%), Query Frame = 0 

Query: 10  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHS-FLS-YPSSS 69
           MAAL  SSSLFSSKPSI+ PS +SPSF PLSLSPIS  S +SSSFSISHS FLS Y SSS
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSS 60

Query: 70  ---RPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEES 129
              RPS VCSFSVRASS  KKKVLIVNTNSGGHAVIGFYFAK+LLGSGHEVTILTVGE+S
Sbjct: 61  SSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQS 120

Query: 130 SDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSF 189
           SDKM KPPFNRFSEIVSGGGKTVWGDPAEIGKVL GASFDVVLDNNGKDIDTV       
Sbjct: 121 SDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTV------- 180

Query: 190 PTKSEFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVID 249
                                                                  RPVID
Sbjct: 181 -------------------------------------------------------RPVID 240

Query: 250 WAKSSGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQY 309
           WAKSSGVKQFLFISSAGIYKPTDEPPHVEGD VKADAGHVGVE+Y+A+VF SWAIFRPQY
Sbjct: 241 WAKSSGVKQFLFISSAGIYKPTDEPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQY 300

Query: 310 MIGSGNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSG 369
           MIGSGNNKDCEEWFFDR                              IVRDRP+PIPGSG
Sbjct: 301 MIGSGNNKDCEEWFFDR------------------------------IVRDRPIPIPGSG 360

Query: 370 MQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVH 429
           MQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCV+DRAVTLDGMAKLCAQAAGRPVNIVH
Sbjct: 361 MQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAGRPVNIVH 407

Query: 430 YDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKP 489
           YDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK+TTNLPEDLKERFEEYVKIGRDKK 
Sbjct: 421 YDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSTTNLPEDLKERFEEYVKIGRDKKA 407

Query: 490 IKFELDDKILESLKVPVAA 504
           IKFELDDKILESLKVPVAA
Sbjct: 481 IKFELDDKILESLKVPVAA 407

[Close]
BLAST of ClCG07G000270 vs. ExPASy TrEMBL
Match: A0A0A0KE82 (Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G408170 PE=3 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 1.0e-189
Identity = 367/501 (73.25%), Postives = 380/501 (75.85%), Query Frame = 0 

Query: 10  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHS-----FLSYP 69
           MAAL  SSSLFSSKPSI+ PSS+SPSFP  SLSPIS  S +SSSFSISHS     + S+ 
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFS 60

Query: 70  SSS--RPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGE 129
           SSS  RPS V SFSVRASS  KKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGE
Sbjct: 61  SSSSFRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGE 120

Query: 130 ESSDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTS 189
           +SSDKM KPPFNRFSEIVSGGGKTVWGDPAEIGKV+ GASFDVVLDNNGKDIDTV     
Sbjct: 121 QSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTV----- 180

Query: 190 SFPTKSEFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPV 249
                                                                    RPV
Sbjct: 181 ---------------------------------------------------------RPV 240

Query: 250 IDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRP 309
           IDWAKSSGVKQFLFISSAGIYK TDEPPHVEGDPVKADAGHVGVE+YIA+VF SWA+FRP
Sbjct: 241 IDWAKSSGVKQFLFISSAGIYKTTDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRP 300

Query: 310 QYMIGSGNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPG 369
           QYMIGSGNNKDCEEWFFDR                              IVRDRP+PIPG
Sbjct: 301 QYMIGSGNNKDCEEWFFDR------------------------------IVRDRPIPIPG 360

Query: 370 SGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNI 429
           SGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVS RAVTLDGMAKLCAQAAGRPVNI
Sbjct: 361 SGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTLDGMAKLCAQAAGRPVNI 409

Query: 430 VHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDK 489
           VHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGW+ TTNLPEDLKERFEEYVKIGRDK
Sbjct: 421 VHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEYVKIGRDK 409

Query: 490 KPIKFELDDKILESLKVPVAA 504
           K IKFELDDKILESL VPVAA
Sbjct: 481 KAIKFELDDKILESLNVPVAA 409

[Close]
BLAST of ClCG07G000270 vs. TAIR 10
Match: AT3G63140.1 (chloroplast stem-loop binding protein of 41 kDa )

HSP 1 Score: 549.7 bits (1415), Expect = 2.5e-156
Identity = 309/498 (62.05%), Postives = 347/498 (69.68%), Query Frame = 0 

Query: 10  MAALASSSSLFSSKPSIHLPSSL-SPSFPPLSL-SPISYPSALSSSFSISHSFLSYP-SS 69
           MAAL+SSS  FSSK +  + + L  PS    SL S  S  S+LSSS S S S L++   +
Sbjct: 1   MAALSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRT 60

Query: 70  SRPSNVCSFSVRASS-PDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESS 129
           SR  +   F+V+ASS  +KK VLIVNTNSGGHAVIGFYFAK+LL +GH VTILTVG+ESS
Sbjct: 61  SRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESS 120

Query: 130 DKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVLAGASFDVVLDNNGKDIDTVRFVTSSFP 189
           +KMKKPPFNRFSEIVSGGGKTVWG+PA +  V+ G +FDVVLDNNGKD+DTV        
Sbjct: 121 EKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTV-------- 180

Query: 190 TKSEFLLLFPMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDW 249
                                                                 RPV+DW
Sbjct: 181 ------------------------------------------------------RPVVDW 240

Query: 250 AKSSGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEEYIAKVFGSWAIFRPQYM 309
           AKSSGVKQFLFISSAGIYK T++PPHVEGD VKADAGHV VE+Y+A+ FG+WA FRPQYM
Sbjct: 241 AKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYM 300

Query: 310 IGSGNNKDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGM 369
           IGSGNNKDCEEWFFDR                              IVRDR VPIPGSG+
Sbjct: 301 IGSGNNKDCEEWFFDR------------------------------IVRDRAVPIPGSGL 360

Query: 370 QLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHY 429
           QLTNI+HVRDLSSMLT AV  P+ A  NIFNCVSDRAVTLDGMAKLCA AAG+ V IVHY
Sbjct: 361 QLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHY 406

Query: 430 DPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPI 489
           DPKA+GVDAKKAF FRNMHFYAEPRAA+D+LGW++ TNLPEDLKERFEEYVKIGRDKK I
Sbjct: 421 DPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEI 406

Query: 490 KFELDDKILESLKVPVAA 504
           KFELDDKILE+LK PVAA
Sbjct: 481 KFELDDKILEALKTPVAA 406

[Close]
BLAST of ClCG07G000270 vs. TAIR 10
Match: AT1G09340.1 (chloroplast RNA binding )

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-38
Identity = 122/424 (28.77%), Postives = 179/424 (42.22%), Query Frame = 0 

Query: 80  SSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMKKPPFNRFSEI 139
           S+  +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     + 
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGK--SPIAKQLPGESDQDF 108

Query: 140 VSGGGKTVW--GDPAE---IGKVLAGASFDVVLDNNGKDIDTVRFVTSSFPTKSEFLLLF 199
                K +   GD  +   +   L+   FDVV D NG++ + V  +  + P         
Sbjct: 109 ADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPK-------- 168

Query: 200 PMLSGFLISIHLLSMIININKISLFMGDENHMPDKPNHEDYYFVDRPVIDWAKSSGVKQF 259
                                                                   ++Q+
Sbjct: 169 --------------------------------------------------------LEQY 228

Query: 260 LFISSAGIYKPTDEPPHVEGDPVKADAGHVG---VEEYIAKVFGSWAIFRPQYMIGSGNN 319
           ++ SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N 
Sbjct: 229 IYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNY 288

Query: 320 KDCEEWFFDRTSTHRYKPVKYLDISNLINELMDLYISNAGIVRDRPVPIPGSGMQLTNIA 379
              EEWFF     HR K                     AG    RP+P+P SG+Q++ + 
Sbjct: 289 NPVEEWFF-----HRLK---------------------AG----RPIPVPNSGIQISQLG 348

Query: 380 HVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIVHYDPKAV 439
           HV+DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G P   IVHY+PK  
Sbjct: 349 HVKDLATAF-LNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEF 371

Query: 440 GVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFELD 495
               KKAFPFR+ HF+A    A+ +LGWK   +L E L + +      G  +K   F  D
Sbjct: 409 DFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTD 371

The following BLAST results are available for this feature:
BLAST of ClCG07G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888331.14.3e-20378.14chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa... [more]
XP_038887630.15.0e-19976.72LOW QUALITY PROTEIN: chloroplast stem-loop binding protein of 41 kDa a, chloropl... [more]
XP_022967430.11.5e-19574.95chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxi... [more]
XP_022963688.13.3e-19574.95chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita mosc... [more]
KAG6571471.14.4e-19574.75Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucur... [more]
BLAST of ClCG07G000270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LYA93.5e-15562.05Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ... [more]
Q9SA523.9e-3728.77Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ... [more]
BLAST of ClCG07G000270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HUG47.3e-19674.95chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita ma... [more]
A0A6J1HIM81.6e-19574.95chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita mo... [more]
A0A5D3E2H35.7e-19374.75Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BLW35.7e-19374.75chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucumis melo... [more]
A0A0A0KE821.0e-18973.25Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G408170 P... [more]
BLAST of ClCG07G000270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G63140.12.5e-15662.05chloroplast stem-loop binding protein of 41 kDa [more]
AT1G09340.12.8e-3828.77chloroplast RNA binding [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.720coord: 94..483
e-value: 8.3E-25
score: 90.0
NoneNo IPR availablePANTHERPTHR43725:SF6CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTICcoord: 240..501
NoneNo IPR availablePANTHERPTHR43725:SF6CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTICcoord: 50..184
NoneNo IPR availablePANTHERPTHR43725UDP-GLUCOSE 4-EPIMERASEcoord: 50..184
NoneNo IPR availablePANTHERPTHR43725UDP-GLUCOSE 4-EPIMERASEcoord: 240..501
IPR001509NAD-dependent epimerase/dehydratasePFAMPF01370Epimerasecoord: 240..397
e-value: 7.7E-5
score: 22.3
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 82..480

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G000270.2ClCG07G000270.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0005829 cytosol
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003723 RNA binding