ClCG06G018355 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G018355
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Alpha-mannosidase
Location	CG_Chr06: 31277643 .. 31278252 (-)
RNA-Seq Expression	ClCG06G018355
Synteny	ClCG06G018355

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTGAGACAAGCAAGGTAACGGGGACAAGTTTATCTGCTAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGGTTGGTGTGGAAAGTAGAAGGGAATCCTAAAGGAGAAAAGGCCTTGAGAGGAGGGCCTGTGAACTCAGCAAAGTTGGTGGTAGAACTTGCTCCTATGGAAATTCGAACCTTCCTGGTTGATTTTACGGACAAATATTCATGCCCTGGTAATGGCAAATAACCAAGGAACCGGGGTGTAGAGAGGAAGAAAAAGGGTTGTTCTGTAGACAGTTTCTAGTTTGTTCAAAATAAGGGAAAACAGAGATGAAGACATTCAGTGTATACTGGAAGCATGCATGTTTTAAACGTTAGTTAATCTGACAAGGATTTCTGTTTGAAACGCAACTTGATCTATTCCTTGGATAGAGCCTTGATAATTTTGAAATTCAAAATGCCTGAAGCAACCTCAAAACCCTACCTTTATTTAAAACGTGCATGAAAAGGTATGTTGATTGATTTCAGGTGAATGCGGAAAGTTTATTAACCAATATATAACATTCACAGTGTCTTCCTGGGCTGACAGTTCAACTGGTTTTGCCACAAACACAAACTAG

mRNA sequence

ATGAATTTTGAGACAAGCAAGGTAACGGGGACAAGTTTATCTGCTAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGGTTGGTGTGGAAAGTAGAAGGGAATCCTAAAGGAGAAAAGGCCTTGAGAGGAGGGCCTGTGAACTCAGCAAAGTTGGTGGTAGAACTTGCTCCTATGGAAATTCGAACCTTCCTGGTTGATTTTACGGACAAATATTCATGCCCTGGTGAATGCGGAAAGTTTATTAACCAATATATAACATTCACAGTGTCTTCCTGGGCTGACAGTTCAACTGGTTTTGCCACAAACACAAACTAG

Coding sequence (CDS)

ATGAATTTTGAGACAAGCAAGGTAACGGGGACAAGTTTATCTGCTAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGGTTGGTGTGGAAAGTAGAAGGGAATCCTAAAGGAGAAAAGGCCTTGAGAGGAGGGCCTGTGAACTCAGCAAAGTTGGTGGTAGAACTTGCTCCTATGGAAATTCGAACCTTCCTGGTTGATTTTACGGACAAATATTCATGCCCTGGTGAATGCGGAAAGTTTATTAACCAATATATAACATTCACAGTGTCTTCCTGGGCTGACAGTTCAACTGGTTTTGCCACAAACACAAACTAG

Protein sequence

MNFETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTFLVDFTDKYSCPGECGKFINQYITFTVSSWADSSTGFATNTN

Homology

[Close]

BLAST of ClCG06G018355 vs. NCBI nr
Match: XP_022987147.1 (probable alpha-mannosidase At5g13980 isoform X2 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 8.3e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
           +T KVT TSLSANQERAEMEKKRLVWKVEGN KGE ALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 927 KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGENALRGGPVNSAKLVVELAPMEIRTF 986

Query: 64  LVDFTDK 71
           L+DFTDK
Sbjct: 987 LIDFTDK 993

[Close]

BLAST of ClCG06G018355 vs. NCBI nr
Match: XP_022987148.1 (probable alpha-mannosidase At5g13980 isoform X3 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 8.3e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
           +T KVT TSLSANQERAEMEKKRLVWKVEGN KGE ALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 912 KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGENALRGGPVNSAKLVVELAPMEIRTF 971

Query: 64  LVDFTDK 71
           L+DFTDK
Sbjct: 972 LIDFTDK 978

[Close]

BLAST of ClCG06G018355 vs. NCBI nr
Match: XP_022987146.1 (probable alpha-mannosidase At5g13980 isoform X1 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 8.3e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4    ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
            +T KVT TSLSANQERAEMEKKRLVWKVEGN KGE ALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 968  KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGENALRGGPVNSAKLVVELAPMEIRTF 1027

Query: 64   LVDFTDK 71
            L+DFTDK
Sbjct: 1028 LIDFTDK 1034

[Close]

BLAST of ClCG06G018355 vs. NCBI nr
Match: XP_022922002.1 (probable alpha-mannosidase At5g13980 isoform X1 [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4    ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
            +T KVT TSLSANQERAEMEKKRLVWKVEGN KGEKALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 968  KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGEKALRGGPVNSAKLVVELAPMEIRTF 1027

Query: 64   LVDFTDK 71
            L+DFT K
Sbjct: 1028 LIDFTVK 1034

[Close]

BLAST of ClCG06G018355 vs. NCBI nr
Match: XP_023516222.1 (probable alpha-mannosidase At5g13980 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
           +T KVT TSLSANQERAEMEKKRLVWKVEGN KGEKALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 927 KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGEKALRGGPVNSAKLVVELAPMEIRTF 986

Query: 64  LVDFTDK 71
           L+DFT K
Sbjct: 987 LIDFTVK 993

[Close]

BLAST of ClCG06G018355 vs. ExPASy Swiss-Prot
Match: P94078 (Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 2    NFETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIR 61
            N +  +V  TSLS NQE+AEMEK+RL+WKVEG+  GE+  RG  V++ KLVVEL PMEIR
Sbjct: 939  NKKIREVKETSLSGNQEKAEMEKRRLIWKVEGS-AGEEVKRGEAVDAEKLVVELVPMEIR 998

Query: 62   TFLVDFTDKYSCPGE 77
            T L+ F D+    G+
Sbjct: 999  TLLIKFDDQIEMVGD 1012

[Close]

BLAST of ClCG06G018355 vs. ExPASy Swiss-Prot
Match: Q9FKW9 (Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-11
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 7    KVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKA-LRGGPVNSAKLVVELAPMEIRTFLV 66
            +VT  SLSANQE+ +M K+++ WKVEG  +   + LRGGPV+ + LVVEL PMEIRTF+V
Sbjct: 975  EVTEMSLSANQEKVKM-KEKMKWKVEGEAEQPSSPLRGGPVDKSTLVVELGPMEIRTFVV 1034

Query: 67   DFTDK 71
             F  K
Sbjct: 1035 QFYQK 1038

[Close]

BLAST of ClCG06G018355 vs. ExPASy Swiss-Prot
Match: Q8LPJ3 (Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 7    KVTGTSLSANQERAEMEKKRLVWKVEGN---PKGEKALRGGPVNSAKLVVELAPMEIRTF 66
            K+T  SLSANQER+ MEKKRLVWKVEG     + +KA RG  ++  KL +EL PMEIRT 
Sbjct: 947  KLTEMSLSANQERSTMEKKRLVWKVEGEGSYGEEKKAKRGREIDPRKLEMELYPMEIRTV 1006

[Close]

BLAST of ClCG06G018355 vs. ExPASy Swiss-Prot
Match: C0HJB3 (Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 12  SLSANQERAEMEKKRLVWKVEG-NPKGEKALRGGPVNSAKLVVELAPMEIRTFLVDF 68
           SLSANQE++EM  K++ W VEG N +  +A+RGGPV++A  VVEL PMEIRTFL+ F
Sbjct: 927 SLSANQEKSEM--KKMKWSVEGDNEQEPQAVRGGPVSNADFVVELGPMEIRTFLLQF 981

[Close]

BLAST of ClCG06G018355 vs. ExPASy TrEMBL
Match: A0A6J1JIM1 (Alpha-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111484786 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.0e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
           +T KVT TSLSANQERAEMEKKRLVWKVEGN KGE ALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 912 KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGENALRGGPVNSAKLVVELAPMEIRTF 971

Query: 64  LVDFTDK 71
           L+DFTDK
Sbjct: 972 LIDFTDK 978

[Close]

BLAST of ClCG06G018355 vs. ExPASy TrEMBL
Match: A0A6J1JDB3 (Alpha-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111484786 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.0e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4    ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
            +T KVT TSLSANQERAEMEKKRLVWKVEGN KGE ALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 968  KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGENALRGGPVNSAKLVVELAPMEIRTF 1027

Query: 64   LVDFTDK 71
            L+DFTDK
Sbjct: 1028 LIDFTDK 1034

[Close]

BLAST of ClCG06G018355 vs. ExPASy TrEMBL
Match: A0A6J1J9K1 (Alpha-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111484786 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.0e-24
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
           +T KVT TSLSANQERAEMEKKRLVWKVEGN KGE ALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 927 KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGENALRGGPVNSAKLVVELAPMEIRTF 986

Query: 64  LVDFTDK 71
           L+DFTDK
Sbjct: 987 LIDFTDK 993

[Close]

BLAST of ClCG06G018355 vs. ExPASy TrEMBL
Match: A0A6J1E5D1 (Alpha-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111430088 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4   ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
           +T KVT TSLSANQERAEMEKKRLVWKVEGN KGEKALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 927 KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGEKALRGGPVNSAKLVVELAPMEIRTF 986

Query: 64  LVDFTDK 71
           L+DFT K
Sbjct: 987 LIDFTVK 993

[Close]

BLAST of ClCG06G018355 vs. ExPASy TrEMBL
Match: A0A6J1E1X4 (Alpha-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111430088 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4    ETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIRTF 63
            +T KVT TSLSANQERAEMEKKRLVWKVEGN KGEKALRGGPVNSAKLVVELAPMEIRTF
Sbjct: 968  KTIKVTETSLSANQERAEMEKKRLVWKVEGNSKGEKALRGGPVNSAKLVVELAPMEIRTF 1027

Query: 64   LVDFTDK 71
            L+DFT K
Sbjct: 1028 LIDFTVK 1034

[Close]

BLAST of ClCG06G018355 vs. TAIR 10
Match: AT3G26720.1 (Glycosyl hydrolase family 38 protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 2    NFETSKVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKALRGGPVNSAKLVVELAPMEIR 61
            N +  +V  TSLS NQE+AEMEK+RL+WKVEG+  GE+  RG  V++ KLVVEL PMEIR
Sbjct: 939  NKKIREVKETSLSGNQEKAEMEKRRLIWKVEGS-AGEEVKRGEAVDAEKLVVELVPMEIR 998

Query: 62   TFLVDFTDKYSCPGE 77
            T L+ F D+    G+
Sbjct: 999  TLLIKFDDQIEMVGD 1012

[Close]

BLAST of ClCG06G018355 vs. TAIR 10
Match: AT5G66150.1 (Glycosyl hydrolase family 38 protein )

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-12
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 7    KVTGTSLSANQERAEMEKKRLVWKVEGNPKGEKA-LRGGPVNSAKLVVELAPMEIRTFLV 66
            +VT  SLSANQE+ +M K+++ WKVEG  +   + LRGGPV+ + LVVEL PMEIRTF+V
Sbjct: 975  EVTEMSLSANQEKVKM-KEKMKWKVEGEAEQPSSPLRGGPVDKSTLVVELGPMEIRTFVV 1034

Query: 67   DFTDK 71
             F  K
Sbjct: 1035 QFYQK 1038

[Close]

BLAST of ClCG06G018355 vs. TAIR 10
Match: AT5G13980.1 (Glycosyl hydrolase family 38 protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 7    KVTGTSLSANQERAEMEKKRLVWKVEGN---PKGEKALRGGPVNSAKLVVELAPMEIRTF 66
            K+T  SLSANQER+ MEKKRLVWKVEG     + +KA RG  ++  KL +EL PMEIRT 
Sbjct: 947  KLTEMSLSANQERSTMEKKRLVWKVEGEGSYGEEKKAKRGREIDPRKLEMELYPMEIRTV 1006

[Close]

BLAST of ClCG06G018355 vs. TAIR 10
Match: AT5G13980.2 (Glycosyl hydrolase family 38 protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 7    KVTGTSLSANQERAEMEKKRLVWKVEGN---PKGEKALRGGPVNSAKLVVELAPMEIRTF 66
            K+T  SLSANQER+ MEKKRLVWKVEG     + +KA RG  ++  KL +EL PMEIRT 
Sbjct: 947  KLTEMSLSANQERSTMEKKRLVWKVEGEGSYGEEKKAKRGREIDPRKLEMELYPMEIRTV 1006

The following BLAST results are available for this feature:

BLAST of ClCG06G018355 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022987147.1	8.3e-24	91.04	probable alpha-mannosidase At5g13980 isoform X2 [Cucurbita maxima]	[more]
XP_022987148.1	8.3e-24	91.04	probable alpha-mannosidase At5g13980 isoform X3 [Cucurbita maxima]	[more]
XP_022987146.1	8.3e-24	91.04	probable alpha-mannosidase At5g13980 isoform X1 [Cucurbita maxima]	[more]
XP_022922002.1	2.4e-23	91.04	probable alpha-mannosidase At5g13980 isoform X1 [Cucurbita moschata]	[more]
XP_023516222.1	2.4e-23	91.04	probable alpha-mannosidase At5g13980 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG06G018355 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P94078	1.6e-14	56.00	Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV...	[more]
Q9FKW9	8.4e-11	56.92	Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g6615...	[more]
Q8LPJ3	3.2e-10	59.68	Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g1398...	[more]
C0HJB3	3.2e-10	61.40	Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1	[more]

BLAST of ClCG06G018355 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIM1	4.0e-24	91.04	Alpha-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111484786 PE=3 SV=1	[more]
A0A6J1JDB3	4.0e-24	91.04	Alpha-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111484786 PE=3 SV=1	[more]
A0A6J1J9K1	4.0e-24	91.04	Alpha-mannosidase OS=Cucurbita maxima OX=3661 GN=LOC111484786 PE=3 SV=1	[more]
A0A6J1E5D1	1.2e-23	91.04	Alpha-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111430088 PE=3 SV=1	[more]
A0A6J1E1X4	1.2e-23	91.04	Alpha-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111430088 PE=3 SV=1	[more]

BLAST of ClCG06G018355 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26720.1	1.2e-15	56.00	Glycosyl hydrolase family 38 protein	[more]
AT5G66150.1	5.9e-12	56.92	Glycosyl hydrolase family 38 protein	[more]
AT5G13980.1	2.3e-11	59.68	Glycosyl hydrolase family 38 protein	[more]
AT5G13980.2	2.3e-11	59.68	Glycosyl hydrolase family 38 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.1360		coord: 1..71 e-value: 1.6E-13 score: 52.8
None	No IPR available	PANTHER	PTHR11607	ALPHA-MANNOSIDASE	coord: 4..68
None	No IPR available	PANTHER	PTHR11607:SF60	ALPHA-MANNOSIDASE	coord: 4..68
IPR011013	Galactose mutarotase-like domain superfamily	SUPERFAMILY	74650	Galactose mutarotase-like	coord: 4..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G018355.1	ClCG06G018355.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004559	alpha-mannosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003824	catalytic activity