ClCG06G015840 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G015840
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	LYR motif-containing protein 4
Location	CG_Chr06: 29151917 .. 29152189 (-)
RNA-Seq Expression	ClCG06G015840
Synteny	ClCG06G015840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCTCGTCACTTCTGCGATTACAACATCAGAGAGTACACCAAACGACGCGCCCTCGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTCCATCCATCTCCTCCGCCTACGCCGACGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAATCCGCTGTCTACTCCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCTCATCGCACAAACTGA

mRNA sequence

ATGGCGGCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCTCGTCACTTCTGCGATTACAACATCAGAGAGTACACCAAACGACGCGCCCTCGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTCCATCCATCTCCTCCGCCTACGCCGACGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAATCCGCTGTCTACTCCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCTCATCGCACAAACTGA

Coding sequence (CDS)

ATGGCGGCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGCTCCGTACAGCTCGTCACTTCTGCGATTACAACATCAGAGAGTACACCAAACGACGCGCCCTCGACGGCTTCCGCCATAACCGGAACCTTTCCGATCCTCCATCCATCTCCTCCGCCTACGCCGACGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAATCCGCTGTCTACTCCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCTCATCGCACAAACTGA

Protein sequence

MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

Homology

[Close]

BLAST of ClCG06G015840 vs. NCBI nr
Match: XP_038879775.1 (LYR motif-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 3.0e-38
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          M APTRSEALSLLRS LRTARHFCDYNIREY KRRA+DGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MVAPTRSEALSLLRSFLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSAVYSLYAPKVKSIME HRTN
Sbjct: 61 AQLEVAKRQSAVYSLYAPKVKSIMEPHRTN 90

[Close]

BLAST of ClCG06G015840 vs. NCBI nr
Match: XP_011660289.1 (LYR motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 7.4e-37
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSEALSLLRSL+RTARHF DYNIREY KRRA+DGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSAVYSLY PKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of ClCG06G015840 vs. NCBI nr
Match: XP_008453246.1 (PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MAAPTRSEALSLLRSL+RT+R FCDYNIREY KRR +DGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of ClCG06G015840 vs. NCBI nr
Match: XP_022932898.1 (LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-containing protein 4 [Cucurbita maxima] >XP_023531294.1 LYR motif-containing protein 4 [Cucurbita pepo subsp. pepo] >KAG7021536.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 9.0e-35
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MA PTRSE+LSLLRSLLRTARHFCDYNIREY KRRA+DGFRHNRNLSDP SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQS VYSL++PKVKSIMEAH TN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of ClCG06G015840 vs. NCBI nr
Match: XP_022134602.1 (LYR motif-containing protein 4-like [Momordica charantia])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MA PTR+EALSLLRSLLRTARHFCDYN+REY KRRA+DGFRHNRNLSDP SISSAYADG+
Sbjct: 1  MATPTRTEALSLLRSLLRTARHFCDYNVREYAKRRAVDGFRHNRNLSDPSSISSAYADGR 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVA+RQS VYS +APKVKSIM+ H  N
Sbjct: 61 AQLEVARRQSTVYSFFAPKVKSIMDPHPAN 90

[Close]

BLAST of ClCG06G015840 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-09
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MAA +R++ L L R+++R ++HF  YN R Y  RR  D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAVYSLYA 78
            LE+ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

[Close]

BLAST of ClCG06G015840 vs. ExPASy Swiss-Prot
Match: Q6Q560 (Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ISD11 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 3  APTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQ 62
          APTR + LSL +  ++ A  F +YN REY   +    FR N N  DP  + + + + K  
Sbjct: 6  APTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKND 65

Query: 63 LEVAKRQSAVYSLY 77
          L V KRQS +  +Y
Sbjct: 66 LGVLKRQSVISQMY 79

[Close]

BLAST of ClCG06G015840 vs. ExPASy Swiss-Prot
Match: B8JLQ0 (LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MA+ +R++ +SL R L++ ++ F  YN R Y  RR  DGFR N ++ +P ++       +
Sbjct: 1  MASCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAR 60

Query: 61 AQLEVAKRQSAVYSLYA 78
            L V KRQ ++  LY+
Sbjct: 61 ENLAVIKRQVSIGHLYS 77

[Close]

BLAST of ClCG06G015840 vs. ExPASy Swiss-Prot
Match: Q6DCS1 (LYR motif-containing protein 4 OS=Xenopus laevis OX=8355 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-06
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          M+A +RS+ LSL + +LR ++ F  YN R Y  RR  D FR  +N+ D   I +     K
Sbjct: 1  MSASSRSQVLSLYKIMLRESQRFSSYNYRTYAIRRIRDAFREKKNVDDFLEIETLLHRAK 60

Query: 61 AQLEVAKRQSAVYSLYA 78
            L V +RQ  +  +YA
Sbjct: 61 ENLNVIQRQVTIGQMYA 77

[Close]

BLAST of ClCG06G015840 vs. ExPASy Swiss-Prot
Match: O46098 (Protein bcn92 OS=Drosophila melanogaster OX=7227 GN=bcn92 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.0e-06
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 5  TRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLE 64
          TR +A++L R+LLR +     YN R Y  R+  D FR NR+  D   I    A+G+  LE
Sbjct: 3  TRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQNLE 62

Query: 65 VAKRQSAVYSLYAPKVKSIMEAHRT 90
          + +RQ  +  LY+   K ++E  +T
Sbjct: 63 LIRRQVIIGHLYSAD-KLVIENKKT 86

[Close]

BLAST of ClCG06G015840 vs. ExPASy TrEMBL
Match: A0A0A0LPH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSEALSLLRSL+RTARHF DYNIREY KRRA+DGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSAVYSLY PKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of ClCG06G015840 vs. ExPASy TrEMBL
Match: A0A5A7UTC8 (LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002810 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MAAPTRSEALSLLRSL+RT+R FCDYNIREY KRR +DGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of ClCG06G015840 vs. ExPASy TrEMBL
Match: A0A1S3BV74 (LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MAAPTRSEALSLLRSL+RT+R FCDYNIREY KRR +DGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of ClCG06G015840 vs. ExPASy TrEMBL
Match: A0A6J1IC29 (LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MA PTRSE+LSLLRSLLRTARHFCDYNIREY KRRA+DGFRHNRNLSDP SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQS VYSL++PKVKSIMEAH TN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of ClCG06G015840 vs. ExPASy TrEMBL
Match: A0A6J1F322 (LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MAAPTRSEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGK 60
          MA PTRSE+LSLLRSLLRTARHFCDYNIREY KRRA+DGFRHNRNLSDP SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQS VYSL++PKVKSIMEAH TN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of ClCG06G015840 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-20
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 7  SEALSLLRSLLRTARHFCDYNIREYTKRRALDGFRHNRNLSDPPSISSAYADGKAQLEVA 66
          SE LSL R+LLR  R F DYNIREY+KRR LDGFR N+NL+DP  ++ AYA+ K QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQSAVYSLYAPKVKSIME 86
          +R   VY  Y PK K+IME
Sbjct: 65 ERVLKVYLAYPPKTKNIME 83

The following BLAST results are available for this feature:

BLAST of ClCG06G015840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879775.1	3.0e-38	94.44	LYR motif-containing protein 4-like [Benincasa hispida]	[more]
XP_011660289.1	7.4e-37	92.22	LYR motif-containing protein 4 [Cucumis sativus]	[more]
XP_008453246.1	4.8e-36	90.00	PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif...	[more]
XP_022932898.1	9.0e-35	87.78	LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-co...	[more]
XP_022134602.1	1.7e-33	83.33	LYR motif-containing protein 4-like [Momordica charantia]	[more]

BLAST of ClCG06G015840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K215	1.4e-09	40.26	LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1	[more]
Q6Q560	2.8e-07	37.84	Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292...	[more]
B8JLQ0	1.8e-06	35.06	LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1	[more]
Q6DCS1	2.4e-06	37.66	LYR motif-containing protein 4 OS=Xenopus laevis OX=8355 GN=lyrm4 PE=3 SV=1	[more]
O46098	7.0e-06	36.47	Protein bcn92 OS=Drosophila melanogaster OX=7227 GN=bcn92 PE=1 SV=1	[more]

BLAST of ClCG06G015840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPH2	3.6e-37	92.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1	[more]
A0A5A7UTC8	2.3e-36	90.00	LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BV74	2.3e-36	90.00	LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1	[more]
A0A6J1IC29	4.4e-35	87.78	LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 ...	[more]
A0A6J1F322	4.4e-35	87.78	LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=...	[more]

BLAST of ClCG06G015840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	1.8e-20	62.03	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 9.9E-18 score: 64.0
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..88
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 19..76 e-value: 1.31149E-22 score: 80.6413

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G015840.1	ClCG06G015840.1	mRNA