ClCG06G013700 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G013700
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr06: 27164228 .. 27164467 (-)
RNA-Seq ExpressionClCG06G013700
SyntenyClCG06G013700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCGAATCATAATCATCAACCCAACCAACTCCGACAACAACAAGAACATGAACAATCCGAACCCAAATCCAACAACGGTGGCCGAGAAAATGAAACCATGGATCCGACCATGAAGGTGTTGATTCGACAAGGAATCGTAGGCGGCGACGATAGCGGCGGATTGGAGACTCACGGCGCCTCTGACGTTCTGGCCTTTTCCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGA

mRNA sequence

ATGGATCCGAATCATAATCATCAACCCAACCAACTCCGACAACAACAAGAACATGAACAATCCGAACCCAAATCCAACAACGGTGGCCGAGAAAATGAAACCATGGATCCGACCATGAAGGTGTTGATTCGACAAGGAATCGTAGGCGGCGACGATAGCGGCGGATTGGAGACTCACGGCGCCTCTGACGTTCTGGCCTTTTCCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGA

Coding sequence (CDS)

ATGGATCCGAATCATAATCATCAACCCAACCAACTCCGACAACAACAAGAACATGAACAATCCGAACCCAAATCCAACAACGGTGGCCGAGAAAATGAAACCATGGATCCGACCATGAAGGTGTTGATTCGACAAGGAATCGTAGGCGGCGACGATAGCGGCGGATTGGAGACTCACGGCGCCTCTGACGTTCTGGCCTTTTCCAGATCAGTCAACAAAACTGACTCTTCTCTCGAATGA

Protein sequence

MDPNHNHQPNQLRQQQEHEQSEPKSNNGGRENETMDPTMKVLIRQGIVGGDDSGGLETHGASDVLAFSRSVNKTDSSLE
Homology
BLAST of ClCG06G013700 vs. NCBI nr
Match: KGN65494.1 (hypothetical protein Csa_019946 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MDPNHNHQPNQLRQQQEHEQSEPKSNNGGRENETMDPTMKVLIRQGIVGG----DDSGG- 60
          MD N NH       QQ+++Q    +N+ GRENE MDPT K+LIRQ IV G    DD+GG 
Sbjct: 1  MDVNKNH-------QQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGR 60

Query: 61 LETHGASDVLAFSRSVNKTDSSLE 80
           E  G S+VLAF+RSVNKTDSSLE
Sbjct: 61 AEIRGPSEVLAFTRSVNKTDSSLE 77

BLAST of ClCG06G013700 vs. NCBI nr
Match: KAA0058205.1 (hypothetical protein E6C27_scaffold274G005260 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MDPNHNHQP-NQLRQQQEHEQSEPKSNNGGRENETMDPTMKVLIRQGIVGGDDS---GGL 60
          MD N +H+  NQ  QQQ+  +S   +++ G ENE MDPT K+LIRQ IV GDD+   GG 
Sbjct: 5  MDVNKSHEEHNQPLQQQQKSKS---NDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGS 64

Query: 61 ETHGASDVLAFSRSVNKTDSSLE 80
          ET  AS+VLAF+RSV+KTDSSLE
Sbjct: 65 ETRSASEVLAFTRSVDKTDSSLE 84

BLAST of ClCG06G013700 vs. NCBI nr
Match: TYK28569.1 (hypothetical protein E5676_scaffold629G002160 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MDPNHNHQP-NQLRQQQEHEQSEPKSNNGGRENETMDPTMKVLIRQGIVGGDDS---GGL 60
          MD N +H+  NQ  QQQ+  +S   +++ G ENE MDPT K+LIRQ IV GDD+   GG 
Sbjct: 1  MDVNKSHEEHNQPLQQQQKSKS---NDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGS 60

Query: 61 ETHGASDVLAFSRSVNKTDSSLE 80
          ET  AS+VLAF+RSV+KTDSSLE
Sbjct: 61 ETRSASEVLAFTRSVDKTDSSLE 80

BLAST of ClCG06G013700 vs. ExPASy TrEMBL
Match: A0A0A0LWZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426950 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.6e-11
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MDPNHNHQPNQLRQQQEHEQSEPKSNNGGRENETMDPTMKVLIRQGIVGG----DDSGG- 60
          MD N NH       QQ+++Q    +N+ GRENE MDPT K+LIRQ IV G    DD+GG 
Sbjct: 1  MDVNKNH-------QQQNQQKSKSNNDTGRENEAMDPTTKLLIRQAIVNGGGGDDDNGGR 60

Query: 61 LETHGASDVLAFSRSVNKTDSSLE 80
           E  G S+VLAF+RSVNKTDSSLE
Sbjct: 61 AEIRGPSEVLAFTRSVNKTDSSLE 77

BLAST of ClCG06G013700 vs. ExPASy TrEMBL
Match: A0A5D3DYW2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002160 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-10
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MDPNHNHQP-NQLRQQQEHEQSEPKSNNGGRENETMDPTMKVLIRQGIVGGDDS---GGL 60
          MD N +H+  NQ  QQQ+  +S   +++ G ENE MDPT K+LIRQ IV GDD+   GG 
Sbjct: 1  MDVNKSHEEHNQPLQQQQKSKS---NDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGS 60

Query: 61 ETHGASDVLAFSRSVNKTDSSLE 80
          ET  AS+VLAF+RSV+KTDSSLE
Sbjct: 61 ETRSASEVLAFTRSVDKTDSSLE 80

BLAST of ClCG06G013700 vs. ExPASy TrEMBL
Match: A0A5A7UX55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005260 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.3e-10
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MDPNHNHQP-NQLRQQQEHEQSEPKSNNGGRENETMDPTMKVLIRQGIVGGDDS---GGL 60
          MD N +H+  NQ  QQQ+  +S   +++ G ENE MDPT K+LIRQ IV GDD+   GG 
Sbjct: 5  MDVNKSHEEHNQPLQQQQKSKS---NDDSGPENEAMDPTTKLLIRQAIVTGDDNNNGGGS 64

Query: 61 ETHGASDVLAFSRSVNKTDSSLE 80
          ET  AS+VLAF+RSV+KTDSSLE
Sbjct: 65 ETRSASEVLAFTRSVDKTDSSLE 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65494.11.8e-1057.14hypothetical protein Csa_019946 [Cucumis sativus][more]
KAA0058205.11.5e-0957.83hypothetical protein E6C27_scaffold274G005260 [Cucumis melo var. makuwa][more]
TYK28569.11.5e-0957.83hypothetical protein E5676_scaffold629G002160 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWZ48.6e-1157.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426950 PE=4 SV=1[more]
A0A5D3DYW27.3e-1057.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UX557.3e-1057.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G013700.1ClCG06G013700.1mRNA