ClCG06G013150 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G013150
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr06: 26432844 .. 26433205 (+)
RNA-Seq ExpressionClCG06G013150
SyntenyClCG06G013150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGAAAACGAGCGATTCATACTTGTTTGGAGTTGCCAGTTCCTTTGAGATGCAACAAGCCCAAGCCCAAAAAATACTTTACGAATCAAGGTGGAGTAGAGAAGACTATGATTAACCACAGTTTACAAAGATGACCTACATGGAGGATGAAGTGTAGGAATTTGTGGACAAAACCACTGGACGCTTGAGTTCCAAAGAAGAGGTTACGTATAAGTCTACTTTGAAAGTTGATGATGATGATAATGATATTGATGCTGTTCAAGGATTTCTCAGTGAGGTTCAAACTCAAGTGAAGTTTAACAAAGTTCCAACCTCTACCAAGATCAATAGTTTCACAAAAGCTACTAATAAGCATATC

mRNA sequence

ATGGGAGGAAAACGAGCGATTCATACTTGTTTGGAGTTGCCAGTTCCTTTGAGATGCAACAAGCCCAAGCCCAAAAAATACTTTACGAATCAAGGTGGAGAATTTGTGGACAAAACCACTGGACGCTTGAGTTCCAAAGAAGAGGTTACGTATAAGTCTACTTTGAAAGTTGATGATGATGATAATGATATTGATGCTGTTCAAGGATTTCTCAGTGAGGTTCAAACTCAAGTGAAGTTTAACAAAGTTCCAACCTCTACCAAGATCAATAGTTTCACAAAAGCTACTAATAAGCATATC

Coding sequence (CDS)

ATGGGAGGAAAACGAGCGATTCATACTTGTTTGGAGTTGCCAGTTCCTTTGAGATGCAACAAGCCCAAGCCCAAAAAATACTTTACGAATCAAGGTGGAGAATTTGTGGACAAAACCACTGGACGCTTGAGTTCCAAAGAAGAGGTTACGTATAAGTCTACTTTGAAAGTTGATGATGATGATAATGATATTGATGCTGTTCAAGGATTTCTCAGTGAGGTTCAAACTCAAGTGAAGTTTAACAAAGTTCCAACCTCTACCAAGATCAATAGTTTCACAAAAGCTACTAATAAGCATATC

Protein sequence

MGGKRAIHTCLELPVPLRCNKPKPKKYFTNQGGEFVDKTTGRLSSKEEVTYKSTLKVDDDDNDIDAVQGFLSEVQTQVKFNKVPTSTKINSFTKATNKHI
Homology
[Close]
BLAST of ClCG06G013150 vs. NCBI nr
Match: TYK09494.1 (hypothetical protein E5676_scaffold499G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 9.7e-22
Identity = 71/129 (55.04%), Postives = 77/129 (59.69%), Query Frame = 0 

Query: 1   MGGKRAIHTCLELPVPLRCNKPKPKKYFTNQGG--------------------------- 60
           MGGKRAIHT L+LPVPL C+  KPKK+ TNQ G                           
Sbjct: 1   MGGKRAIHTSLKLPVPLGCS--KPKKHSTNQRGMEKTITTVNKYEVVGGSSVEFSKRQKV 60

Query: 61  -EFVDKTTGRLSSKEEVTYKSTLKVDDDDNDIDAVQGFLSEVQTQVKFNKV-PTSTKINS 101
            EFVDK TGRLSSKEEVTYK ++KVD      D   GF+ EVQTQVKF KV PTS K NS
Sbjct: 61  KEFVDKNTGRLSSKEEVTYKCSMKVD------DGAHGFVDEVQTQVKFKKVIPTSAKNNS 120

[Close]
BLAST of ClCG06G013150 vs. NCBI nr
Match: KAA0058314.1 (hypothetical protein E6C27_scaffold274G006480 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 9.7e-22
Identity = 71/129 (55.04%), Postives = 77/129 (59.69%), Query Frame = 0 

Query: 1   MGGKRAIHTCLELPVPLRCNKPKPKKYFTNQGG--------------------------- 60
           MGGKRAIHT L+LPVPL C+  KPKK+ TNQ G                           
Sbjct: 1   MGGKRAIHTSLKLPVPLGCS--KPKKHSTNQRGMEKTITTVNKYEVVGGSSVEFSKRQKV 60

Query: 61  -EFVDKTTGRLSSKEEVTYKSTLKVDDDDNDIDAVQGFLSEVQTQVKFNKV-PTSTKINS 101
            EFVDK TGRLSSKEEVTYK ++KVD      D   GF+ EVQTQVKF KV PTS K NS
Sbjct: 61  KEFVDKNTGRLSSKEEVTYKCSMKVD------DGAHGFVDEVQTQVKFKKVIPTSAKNNS 120

[Close]
BLAST of ClCG06G013150 vs. NCBI nr
Match: KAG6587772.1 (hypothetical protein SDJN03_16337, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-16
Identity = 64/135 (47.41%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 1   MGGKRAIH--TCLELPVPLRCNKPK-----PKKYFTNQGG-------------------- 60
           MGGKRA+H     EL VPL CNKPK      K+  TN+ G                    
Sbjct: 113 MGGKRAVHYYEMTELEVPLSCNKPKLAKPGAKRASTNRRGAEKTTTTVYKNELPGGLTVQ 172

Query: 61  --------EFVDKTTGRLSSKEEVTYKSTLKVDDDDNDIDAVQGFLSEVQTQVKFNKVPT 101
                   EFVD  +GRLSSKEEVTYKS+ KVD      +AVQG  +EVQTQVKF K P+
Sbjct: 173 VSKRHKVKEFVDNNSGRLSSKEEVTYKSSFKVD------NAVQGIFNEVQTQVKFKKAPS 232

[Close]
BLAST of ClCG06G013150 vs. ExPASy TrEMBL
Match: A0A5D3CE69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00950 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.7e-22
Identity = 71/129 (55.04%), Postives = 77/129 (59.69%), Query Frame = 0 

Query: 1   MGGKRAIHTCLELPVPLRCNKPKPKKYFTNQGG--------------------------- 60
           MGGKRAIHT L+LPVPL C+  KPKK+ TNQ G                           
Sbjct: 1   MGGKRAIHTSLKLPVPLGCS--KPKKHSTNQRGMEKTITTVNKYEVVGGSSVEFSKRQKV 60

Query: 61  -EFVDKTTGRLSSKEEVTYKSTLKVDDDDNDIDAVQGFLSEVQTQVKFNKV-PTSTKINS 101
            EFVDK TGRLSSKEEVTYK ++KVD      D   GF+ EVQTQVKF KV PTS K NS
Sbjct: 61  KEFVDKNTGRLSSKEEVTYKCSMKVD------DGAHGFVDEVQTQVKFKKVIPTSAKNNS 120

[Close]
BLAST of ClCG06G013150 vs. ExPASy TrEMBL
Match: A0A5A7UT05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006480 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.7e-22
Identity = 71/129 (55.04%), Postives = 77/129 (59.69%), Query Frame = 0 

Query: 1   MGGKRAIHTCLELPVPLRCNKPKPKKYFTNQGG--------------------------- 60
           MGGKRAIHT L+LPVPL C+  KPKK+ TNQ G                           
Sbjct: 1   MGGKRAIHTSLKLPVPLGCS--KPKKHSTNQRGMEKTITTVNKYEVVGGSSVEFSKRQKV 60

Query: 61  -EFVDKTTGRLSSKEEVTYKSTLKVDDDDNDIDAVQGFLSEVQTQVKFNKV-PTSTKINS 101
            EFVDK TGRLSSKEEVTYK ++KVD      D   GF+ EVQTQVKF KV PTS K NS
Sbjct: 61  KEFVDKNTGRLSSKEEVTYKCSMKVD------DGAHGFVDEVQTQVKFKKVIPTSAKNNS 120

The following BLAST results are available for this feature:
BLAST of ClCG06G013150 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09494.19.7e-2255.04hypothetical protein E5676_scaffold499G00950 [Cucumis melo var. makuwa][more]
KAA0058314.19.7e-2255.04hypothetical protein E6C27_scaffold274G006480 [Cucumis melo var. makuwa][more]
KAG6587772.14.7e-1647.41hypothetical protein SDJN03_16337, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of ClCG06G013150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G013150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CE694.7e-2255.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UT054.7e-2255.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of ClCG06G013150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G013150.1ClCG06G013150.1mRNA