ClCG06G011675 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G011675
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CCHC-type domain-containing protein
Location	CG_Chr06: 24681128 .. 24683013 (-)
RNA-Seq Expression	ClCG06G011675
Synteny	ClCG06G011675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAATTCAAATTCAGGGAATTCCAGCTCAATCATAGCAATCGTAGGAGAGATTTAAGTAAAACTAATGATAAAGAGATGAATAGAAAAGTAATAGAAAAGAAAAAGAAGAATCAAAAAAGGAAAAGGGACAAAGAAGAAGATTAAGAGACTAGGAACACGACAAGACAAGACAACAACGATGTCGTTGGAATATGGCAGTGGAGAGCGCGCCATCCGGATTCAGGTGCGACAGCCCGGATTGTCGGACTACAACTCAGGCATTTGGTCCGATCATGAGGCTTCATCGTATTTGCATGTTCGAAGCACTAAACTGGTGAAATTGCTTAGTTCTTCGACTCATTTACTTCTTAATCATTGTCTTCCCACCATTTCAGGCTTCGCTCCGATCCTTGAACCCGAACGATTCCGGCCTCCATCGTAGCTTCTCACTCATTCCAGAAAGGTAACCGGAGAACTTGAGTGTATCCGGGCGGCGATCGAAGTCGGCAATATTCCGACTGTGAGTTTTGATTTCGAACGGCTTCGGCAGTTAGCGAGGCCCGACATCTTGGATAATTGTTTTAAATAGTAAAATTAATAAATATTTAAATATAACTATAGCTACTATCATTTATTACTATATAGATTAGATATCTTAGATAGTGATATTTTGCTTTATTTAGAAATAAATTATTTATTTTGTTATATTTAAAAATAATCTAAAAATATATTATAGTTATTATAAATATTAGGAGAAAATAGATGTACATTATGTAGCCAAGTTGTTTAGTGTCTAAAGGTCATGTGTCTCTTAATGACACATTCTTAGTGGCCATGAAGTTTCACCACCTGTTTGCCAAATTGTCTATAAACGGTGGCATTTGGTGGATGTTGGAAAAACACACATTGGAGAGAAAGGATTAGAAAGATTTTTACTTGTCATAAAATTCCACTTTAATTTATTTATTTTAGTTTATTTGGTTATTTTATTTCCTTTGATTATTATATGTATTTTATTATTTTAATATTATAATCACTCGGTTTTTGTGCTCCTCAATTTTACAACACGTTATCAGCACGAGCTCTTGTTGTTTTCCCGTTGAAGGTAGGTTCTTAAGGTTTGTCATTTTTCCTTTATTATAATTAGTAAATTAAATGTTGTTTTGCATATATAATATATATTAAATTACTAATATAACTACAATTTTATGTGATAGTGTTATCATGGCAAATCTACAAAAATAGAATTCACAGCCCTTGACATCAATGAAAATAATTATTTGTCGTGGGTGCTTGATGCTGAAATACATCTAGATGCTATGAACTTGGGAGAAACAATTAAAGAGAAAAATATAACATCCATTCAGAAAAAAGCAAAAGCTATGATTTATATTTAACAATAAAAAATCTTTATATCTTGTGGAAGAATTTAAAAGAGAGATATGATCATAAAAAGACAGTCATTCTTACTAAAACTCGTTATGAAATTGATGCATTTGAGGTTTCAAGATTTCAAATCAATAAGTGACTACAACTCCGCATTATTTAAAATCAGTTCAACATTGTTGTTATGCGGAGAGAAAATTACTGATGCGGATAAGTTGGAGAAAACATTTTCTACATTTCATGCCTCGAATATGCTTCTGCAGCAGCAATATCGAAAGAAAAGTTTTAAACAATATTCTGAATTAATTTCATGTCTTCTCGTGGCTGAACAAAATAATGAGCCATTAATGAAGAACCATGAATATCGACCAACTAGAACAACACCATTCCTTGAAGTGAATGCTGTAAATTTTAATAATCGTGATCGAGGTCGTGGTCGTGGTATGGTCGAGGCCGTGACTGTGGCAGAGGAAGAAATAATTATTATTTTCGTGGTGGTCGTTCTAATTATCTAA

mRNA sequence

ATGCAAGAATTCAAATTCAGGGAATTCCAGCTCAATCATAGCAATCGTAGGAGAGATTTAAGTAAAACTAATGATAAAGAGATGAATAGAAAATGGAGAGCGCGCCATCCGGATTCAGGTGCGACAGCCCGGATTGTCGGACTACAACTCAGGCATTTGGCTTCGCTCCGATCCTTGAACCCGAACGATTCCGGCCTCCATCGTAGCTTCTCACTCATTCCAGAAAGTTCAACATTGTTGTTATGCGGAGAGAAAATTACTGATGCGGATAAGTTGGAGAAAACATTTTCTACATTTCATGCCTCGAATATGCTTCTGCAGCAGCAATATCGAAAGAAAAGTTTTAAACAATATTCTGAATTAATTTCATGTCTTCTCGTGGCTGAACAAAATAATGAGCCATTAATGAAGAACCATGAATATCGACCAACTAGAACAACACCATTCCTTGAAGTGAATGCTGTAAATTTTAATAATCGTGATCGAGGTCGTGGTCGTGGTATGGTCGAGGCCGTGACTGTGGCAGAGGAAGAAATAATTATTATTTTCGTGGTGGTCGTTCTAATTATCTAA

Coding sequence (CDS)

ATGCAAGAATTCAAATTCAGGGAATTCCAGCTCAATCATAGCAATCGTAGGAGAGATTTAAGTAAAACTAATGATAAAGAGATGAATAGAAAATGGAGAGCGCGCCATCCGGATTCAGGTGCGACAGCCCGGATTGTCGGACTACAACTCAGGCATTTGGCTTCGCTCCGATCCTTGAACCCGAACGATTCCGGCCTCCATCGTAGCTTCTCACTCATTCCAGAAAGTTCAACATTGTTGTTATGCGGAGAGAAAATTACTGATGCGGATAAGTTGGAGAAAACATTTTCTACATTTCATGCCTCGAATATGCTTCTGCAGCAGCAATATCGAAAGAAAAGTTTTAAACAATATTCTGAATTAATTTCATGTCTTCTCGTGGCTGAACAAAATAATGAGCCATTAATGAAGAACCATGAATATCGACCAACTAGAACAACACCATTCCTTGAAGTGAATGCTGTAAATTTTAATAATCGTGATCGAGGTCGTGGTCGTGGTATGGTCGAGGCCGTGACTGTGGCAGAGGAAGAAATAATTATTATTTTCGTGGTGGTCGTTCTAATTATCTAA

Protein sequence

MQEFKFREFQLNHSNRRRDLSKTNDKEMNRKWRARHPDSGATARIVGLQLRHLASLRSLNPNDSGLHRSFSLIPESSTLLLCGEKITDADKLEKTFSTFHASNMLLQQQYRKKSFKQYSELISCLLVAEQNNEPLMKNHEYRPTRTTPFLEVNAVNFNNRDRGRGRGMVEAVTVAEEEIIIIFVVVVLII

Homology

[Close]

BLAST of ClCG06G011675 vs. NCBI nr
Match: WP_217833168.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 156.0 bits (393), Expect = 3.3e-34
Identity = 95/166 (57.23%), Postives = 111/166 (66.87%), Query Frame = 0


Query: 9   FQLNHSNRRRDLSKTNDKEMNRKWR--ARHPDSGAT-----ARIVGLQLRHLASLRSLNP 68
           F  +H + R  +     K+++  W+   +  D   T     AR   + LR L   +S++ 
Sbjct: 56  FLRHHLHERLKMEYLTIKDLSILWKNLKQRYDHQKTVILPKARYEWMHLR-LQDFKSVSD 115

Query: 69  NDSGLHRSFSLIPESSTLLLCGEKITDADKLEKTFSTFHASNMLLQQQYRKKSFKQYSEL 128
            +S L +       SS LLLCGEKITDA  LE TFSTFHASNML+QQQYR+K FKQYSEL
Sbjct: 116 YNSALFKI------SSKLLLCGEKITDAYMLENTFSTFHASNMLMQQQYREKGFKQYSEL 175

Query: 129 ISCLLVAEQNNEPLMKNHEYRPTRTTPFLEVNAVNFNNRDRGRGRG 168
           ISCLLVAEQNNE LMKNHE RPT TTPF EVNAVNFNNR RGRGRG
Sbjct: 176 ISCLLVAEQNNELLMKNHESRPTGTTPFPEVNAVNFNNRGRGRGRG 214

[Close]

BLAST of ClCG06G011675 vs. NCBI nr
Match: XP_022144017.1 (uncharacterized protein LOC111013806 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 6.1e-33
Identity = 82/125 (65.60%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 43  ARIVGLQLRHLASLRSLNPNDSGLHRSFSLIPESSTLLLCGEKITDADKLEKTFSTFHAS 102
           AR   + LR L   +S++  +S L +       SS L LCGEKITD+D LEKT+STFH S
Sbjct: 97  ARYEWMHLR-LQDFKSVSDYNSALFKI------SSKLKLCGEKITDSDMLEKTYSTFHVS 156

Query: 103 NMLLQQQYRKKSFKQYSELISCLLVAEQNNEPLMKNHEYRPTRTTPFLEVNAVNFNNRDR 162
           N+LLQQQYR+K FK+YSELISCLLVA+QNNE LMKNHE RPT  TPF E NAVNFNNR R
Sbjct: 157 NILLQQQYREKGFKKYSELISCLLVAKQNNELLMKNHESRPTGATPFPEANAVNFNNRGR 214

Query: 163 GRGRG 168
           GRGRG
Sbjct: 217 GRGRG 214

[Close]

BLAST of ClCG06G011675 vs. NCBI nr
Match: XP_022152405.1 (uncharacterized protein LOC111020141 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-31
Identity = 73/92 (79.35%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 76  SSTLLLCGEKITDADKLEKTFSTFHASNMLLQQQYRKKSFKQYSELISCLLVAEQNNEPL 135
           S  L LCGEKITD+D LEKT+STFH  N+LLQQQYR+K FK+YSELISCLLVAEQNNE L
Sbjct: 22  SLKLKLCGEKITDSDMLEKTYSTFHVLNILLQQQYREKGFKKYSELISCLLVAEQNNELL 81

Query: 136 MKNHEYRPTRTTPFLEVNAVNFNNRDRGRGRG 168
           MKN E RPT  TPFLE NAVNFNNR RGRGRG
Sbjct: 82  MKNRESRPTGATPFLEANAVNFNNRGRGRGRG 113

[Close]

BLAST of ClCG06G011675 vs. NCBI nr
Match: XP_027103188.1 (uncharacterized protein LOC113724489 [Coffea arabica])

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-31
Identity = 77/125 (61.60%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 43  ARIVGLQLRHLASLRSLNPNDSGLHRSFSLIPESSTLLLCGEKITDADKLEKTFSTFHAS 102
           AR   L LR L   +S+N  +S + R       +S L LCGEK+TD D LEKTFSTFH S
Sbjct: 65  ARYDWLHLR-LQDFKSVNEYNSAMFRI------TSQLSLCGEKVTDKDMLEKTFSTFHVS 124

Query: 103 NMLLQQQYRKKSFKQYSELISCLLVAEQNNEPLMKNHEYRPTRTTPFLEVNAVNFNNRDR 162
           NMLLQQQYR+K FK+YSELI+CLL+AEQNNE L+KNHE+RPT  +PF E NA+ F N  R
Sbjct: 125 NMLLQQQYREKGFKKYSELIACLLLAEQNNELLLKNHEFRPTGASPFSEANAIQFQNSGR 182

Query: 163 GRGRG 168
           GRGRG
Sbjct: 185 GRGRG 182

[Close]

BLAST of ClCG06G011675 vs. NCBI nr
Match: PIN02104.1 (hypothetical protein CDL12_25388 [Handroanthus impetiginosus])

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-31
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 76  SSTLLLCGEKITDADKLEKTFSTFHASNMLLQQQYRKKSFKQYSELISCLLVAEQNNEPL 135
           +S L+LCGE I+D D LEKTFSTFHASN+LLQQQYR+K FK+YSELISCLLVAEQNNE L
Sbjct: 5   TSQLMLCGENISDKDMLEKTFSTFHASNLLLQQQYREKGFKKYSELISCLLVAEQNNELL 64

Query: 136 MKNHEYRPTRTTPFLEVNAVNFNNRDRGRGRG 168
           MKNHE RPT +TPF E NA NF+N  RGRGRG
Sbjct: 65  MKNHESRPTGSTPFPEANATNFSNSGRGRGRG 96

[Close]

BLAST of ClCG06G011675 vs. ExPASy TrEMBL
Match: A0A6J1CSH6 (uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013806 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 82/125 (65.60%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 43  ARIVGLQLRHLASLRSLNPNDSGLHRSFSLIPESSTLLLCGEKITDADKLEKTFSTFHAS 102
           AR   + LR L   +S++  +S L +       SS L LCGEKITD+D LEKT+STFH S
Sbjct: 97  ARYEWMHLR-LQDFKSVSDYNSALFKI------SSKLKLCGEKITDSDMLEKTYSTFHVS 156

Query: 103 NMLLQQQYRKKSFKQYSELISCLLVAEQNNEPLMKNHEYRPTRTTPFLEVNAVNFNNRDR 162
           N+LLQQQYR+K FK+YSELISCLLVA+QNNE LMKNHE RPT  TPF E NAVNFNNR R
Sbjct: 157 NILLQQQYREKGFKKYSELISCLLVAKQNNELLMKNHESRPTGATPFPEANAVNFNNRGR 214

Query: 163 GRGRG 168
           GRGRG
Sbjct: 217 GRGRG 214

[Close]

BLAST of ClCG06G011675 vs. ExPASy TrEMBL
Match: A0A6J1DDU8 (uncharacterized protein LOC111020141 OS=Momordica charantia OX=3673 GN=LOC111020141 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.3e-32
Identity = 73/92 (79.35%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 76  SSTLLLCGEKITDADKLEKTFSTFHASNMLLQQQYRKKSFKQYSELISCLLVAEQNNEPL 135
           S  L LCGEKITD+D LEKT+STFH  N+LLQQQYR+K FK+YSELISCLLVAEQNNE L
Sbjct: 22  SLKLKLCGEKITDSDMLEKTYSTFHVLNILLQQQYREKGFKKYSELISCLLVAEQNNELL 81

Query: 136 MKNHEYRPTRTTPFLEVNAVNFNNRDRGRGRG 168
           MKN E RPT  TPFLE NAVNFNNR RGRGRG
Sbjct: 82  MKNRESRPTGATPFLEANAVNFNNRGRGRGRG 113

[Close]

BLAST of ClCG06G011675 vs. ExPASy TrEMBL
Match: A0A6P6VJM8 (uncharacterized protein LOC113724489 OS=Coffea arabica OX=13443 GN=LOC113724489 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 77/125 (61.60%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 43  ARIVGLQLRHLASLRSLNPNDSGLHRSFSLIPESSTLLLCGEKITDADKLEKTFSTFHAS 102
           AR   L LR L   +S+N  +S + R       +S L LCGEK+TD D LEKTFSTFH S
Sbjct: 65  ARYDWLHLR-LQDFKSVNEYNSAMFRI------TSQLSLCGEKVTDKDMLEKTFSTFHVS 124

Query: 103 NMLLQQQYRKKSFKQYSELISCLLVAEQNNEPLMKNHEYRPTRTTPFLEVNAVNFNNRDR 162
           NMLLQQQYR+K FK+YSELI+CLL+AEQNNE L+KNHE+RPT  +PF E NA+ F N  R
Sbjct: 125 NMLLQQQYREKGFKKYSELIACLLLAEQNNELLLKNHEFRPTGASPFSEANAIQFQNSGR 182

Query: 163 GRGRG 168
           GRGRG
Sbjct: 185 GRGRG 182

[Close]

BLAST of ClCG06G011675 vs. ExPASy TrEMBL
Match: A0A2G9I7B1 (CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_01631 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-31
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 76  SSTLLLCGEKITDADKLEKTFSTFHASNMLLQQQYRKKSFKQYSELISCLLVAEQNNEPL 135
           +S L+LCGE I+D D LEKTFSTFHASN+LLQQQYR+K FK+YSELISCLLVAEQNNE L
Sbjct: 5   TSQLMLCGENISDKDMLEKTFSTFHASNLLLQQQYREKGFKKYSELISCLLVAEQNNELL 64

Query: 136 MKNHEYRPTRTTPFLEVNAVNFNNRDRGRGRG 168
           MKNHE RPT +TPF E NA NF+N  RGRGRG
Sbjct: 65  MKNHESRPTGSTPFPEANATNFSNSGRGRGRG 96

[Close]

BLAST of ClCG06G011675 vs. ExPASy TrEMBL
Match: A0A2G9G9X3 (CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25388 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-31
Identity = 71/92 (77.17%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 76  SSTLLLCGEKITDADKLEKTFSTFHASNMLLQQQYRKKSFKQYSELISCLLVAEQNNEPL 135
           +S L+LCGE I+D D LEKTFSTFHASN+LLQQQYR+K FK+YSELISCLLVAEQNNE L
Sbjct: 5   TSQLMLCGENISDKDMLEKTFSTFHASNLLLQQQYREKGFKKYSELISCLLVAEQNNELL 64

Query: 136 MKNHEYRPTRTTPFLEVNAVNFNNRDRGRGRG 168
           MKNHE RPT +TPF E NA NF+N  RGRGRG
Sbjct: 65  MKNHESRPTGSTPFPEANATNFSNSGRGRGRG 96

The following BLAST results are available for this feature:

BLAST of ClCG06G011675 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833168.1	3.3e-34	57.23	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
XP_022144017.1	6.1e-33	65.60	uncharacterized protein LOC111013806 [Momordica charantia]	[more]
XP_022152405.1	1.5e-31	79.35	uncharacterized protein LOC111020141 [Momordica charantia]	[more]
XP_027103188.1	2.6e-31	61.60	uncharacterized protein LOC113724489 [Coffea arabica]	[more]
PIN02104.1	3.4e-31	77.17	hypothetical protein CDL12_25388 [Handroanthus impetiginosus]	[more]

BLAST of ClCG06G011675 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG06G011675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSH6	3.0e-33	65.60	uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DDU8	7.3e-32	79.35	uncharacterized protein LOC111020141 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6P6VJM8	1.2e-31	61.60	uncharacterized protein LOC113724489 OS=Coffea arabica OX=13443 GN=LOC113724489 ...	[more]
A0A2G9I7B1	1.6e-31	77.17	CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=C...	[more]
A0A2G9G9X3	1.6e-31	77.17	CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=C...	[more]

BLAST of ClCG06G011675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33325	ZINC FINGER, CCHC-TYPE-RELATED	coord: 75..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G011675.1	ClCG06G011675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding