ClCG06G011650 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G011650
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
LocationCG_Chr06: 24642994 .. 24644492 (+)
RNA-Seq ExpressionClCG06G011650
SyntenyClCG06G011650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATCCCGTGAAGGATCCTTTGAACGTTTCTGCTACCAATTCTGAAACAACCAATCTGATCCTTCTGCTACCAAGAACCCCACTGATTCCGTTTATGTGAAGAAAAACCCTGATGCGTATGAAGTTAGATTTGGAATCTGTCCAATCGGCTCCCCACCATTCGCCAACCTACTGAATCAAGTGACTTTGATCAAGATGGATCACAACAATTTTCTACTATGGCAGAATATTGCTCTTCCTATTCTCTGCAACTATAAACTTGAAGGTCACCTCACAGGTAAGGATGAATGCCCTGAATATTCTATTATCCTTAAAGAACGAACCCAAAGGCCTTATTCTCCCAAATCCAGAGCATGACATCTGGTTAGCAGTTGATCAACTCTTAGTTGGCTAGTTATACAACTCTATGACAGTGGAAGTGGCTTCTCAAGTCACTGGGTATGACACGACCAAAGACCTGTAGGAAGCTCTACAAGAATATTATGGTCTACAAGCTGCATCTTAACAAGACTACATCAAAAGAATGCTTCGGCAAACCAAGAAAAGGAATACCAAGATGACTAACTATTTAGCTTTAATGAAAGGATATGTTAACAATTTATACTTAGCAGGTTCCCCAGTTAGTACACAAGATCTAATTTCATACATGATTGCAGGATTTAATGAGGAGTACACTCCCATCGTAGTTGTCTTACAAAATCAAGACTTGAGTTGGACTGCTATCCAACACAGACTTCTTACCTATGAGAATCATCAAGAACAGCTTCAATCTCAAAGGGTTTGGTATCTATTAATCAACCCTCAACTCATGTAGCCACCTCCAACCCAAATCCGAGCAGCTCCTCTAGTCAACATAATCAAAACAACAAAAACAAGAACTATAAAGGCAGAGGAAAGGGTCGTGGAGGTAATTCTCCTCGTTTAATCTGTCATGTTTGTGGGAAACCTGGACACTCAGCAGTTGTTTATTACTATAGTACCCAAAATACTGGTAACTCTTCTTCTCCCAATTAGAACAAGAACTCTACTCCAACAGCCTTAATAACCACTCCAGAACATCTACATGATTCAGCTTGGTATCGACCAATCATCTGACCTCAGACTCGGAAAATCTCATAGTGAAATCCAAGTATATAGCAATGAGATGATTACTTTTGGTAATGGGCAACAACTTTCTATTCGTTATATTGATAACACTAATATTAGAGGAAATGTTAGAAACCTTGTTCTGAAAAGTCTGATGCATGTTCCTTTAATAAGCAAAACTTGATAAGCATATCTCGTCCTTACTATGGATAATTCAGTGATTGTTGAATTTTATGATTCCTTTTGTGCTATTAAAGACAAGGGAATGGGGACGGTCCTTCTGGAAGGAACAATTAAGGATGGCTTGTACCAAGTTAAGACAGCCTCAACTAAAAATAACCAAGAAGTCACTGGGCAAAAATTTACTTTTTTGACTTTTGTCTCATGTTTGGCTGCTAGTAGAAATAA

mRNA sequence

ATGGCTAATCCCGTGAAGGATCCTTTGAACAACCCCACTGATTCCGTTTATGTGAAGAAAAACCCTGATGCGTATGAAGTTAGATTTGGAATCTGTCCAATCGGCTCCCCACCATTCGCCAACCTACTGAATCAAGTGACTTTGATCAAGATGGATCACAACAATTTTCTACTATGGCAGAATATTGCTCTTCCTATTCTCTGCAACTATAAACTTGAAGGTCACCTCACAGGTTCCCCAGTTAGTACACAAGATCTAATTTCATACATGATTGCAGGATTTAATGAGGAGTACACTCCCATCGTAGTTGTCTTACAAAATCAAGACTTGAGTTGGACTGCTATCCAACACAGACTTCTTACCTATGAGAATCATCAAGAACAGCTTCAATCTCAAAGGCCACCTCCAACCCAAATCCGAGCAGCTCCTCTAGTCAACATAATCAAAACAACAAAAACAAGAACTATAAAGGCAGAGGAAAGGGTCGTGGAGAACATCTACATGATTCAGCTTGGTATCGACCAATCATCTGACCTCAGACTCGGAAAATCTCATAGTGAAATCCAAGTATATAGCAATGAGATGATTACTTTTGGTAATGGGCAACAACTTTCTATTCGTTATATTGATAACACTAATATTAGAGGAAATAAATAA

Coding sequence (CDS)

ATGGCTAATCCCGTGAAGGATCCTTTGAACAACCCCACTGATTCCGTTTATGTGAAGAAAAACCCTGATGCGTATGAAGTTAGATTTGGAATCTGTCCAATCGGCTCCCCACCATTCGCCAACCTACTGAATCAAGTGACTTTGATCAAGATGGATCACAACAATTTTCTACTATGGCAGAATATTGCTCTTCCTATTCTCTGCAACTATAAACTTGAAGGTCACCTCACAGGTTCCCCAGTTAGTACACAAGATCTAATTTCATACATGATTGCAGGATTTAATGAGGAGTACACTCCCATCGTAGTTGTCTTACAAAATCAAGACTTGAGTTGGACTGCTATCCAACACAGACTTCTTACCTATGAGAATCATCAAGAACAGCTTCAATCTCAAAGGCCACCTCCAACCCAAATCCGAGCAGCTCCTCTAGTCAACATAATCAAAACAACAAAAACAAGAACTATAAAGGCAGAGGAAAGGGTCGTGGAGAACATCTACATGATTCAGCTTGGTATCGACCAATCATCTGACCTCAGACTCGGAAAATCTCATAGTGAAATCCAAGTATATAGCAATGAGATGATTACTTTTGGTAATGGGCAACAACTTTCTATTCGTTATATTGATAACACTAATATTAGAGGAAATAAATAA

Protein sequence

MANPVKDPLNNPTDSVYVKKNPDAYEVRFGICPIGSPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTGSPVSTQDLISYMIAGFNEEYTPIVVVLQNQDLSWTAIQHRLLTYENHQEQLQSQRPPPTQIRAAPLVNIIKTTKTRTIKAEERVVENIYMIQLGIDQSSDLRLGKSHSEIQVYSNEMITFGNGQQLSIRYIDNTNIRGNK
Homology
[Close]
BLAST of ClCG06G011650 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-07
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTG 79
          SPP   LLNQ+T IKMD  NFLLWQN+ALPIL +YKL  +LTG
Sbjct: 24 SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTG 66

[Close]
BLAST of ClCG06G011650 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTG 79
          +PP   +LNQ+T IK+D +N+LLW+ +ALPIL  YKLEGHLTG
Sbjct: 21 NPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 63

[Close]
BLAST of ClCG06G011650 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-06
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLT 78
          +PP   +LNQ+T +K+D  N+LLW+ +ALPIL +YKLEGHLT
Sbjct: 20 NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLT 61

[Close]
BLAST of ClCG06G011650 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-06
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLT 78
          +PP   +LNQ+T +K+D  N+LLW+ +ALPIL +YKLEGHLT
Sbjct: 20 NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLT 61

[Close]
BLAST of ClCG06G011650 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-06
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLT 78
          +PP   +LNQ+T +K+D  N+LLW+ +ALPIL +YKLEGHLT
Sbjct: 20 NPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLT 61

[Close]
BLAST of ClCG06G011650 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-07
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTG 79
          SPP   LLNQ+T IKMD  NFLLWQN+ALPIL +YKL  +LTG
Sbjct: 24 SPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTG 66

[Close]
BLAST of ClCG06G011650 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.5e-07
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTG 79
          +PP   +LNQ+T IK+D +N+LLW+ +ALPIL  YKLEGHLTG
Sbjct: 21 NPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 63

[Close]
BLAST of ClCG06G011650 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 36 SPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTG 79
          +PP   +LNQ+  +K+D  N+LLW+ +ALPIL  YKLEGHLTG
Sbjct: 20 NPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTG 62

[Close]
BLAST of ClCG06G011650 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 27 VRFGICPIGSPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTG 79
          V F      +PP   LLNQ++ +K+D  N+LLW+ +ALPI+ +YK EGHLTG
Sbjct: 8  VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTG 59

[Close]
BLAST of ClCG06G011650 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 27 VRFGICPIGSPPFANLLNQVTLIKMDHNNFLLWQNIALPILCNYKLEGHLTG 79
          V F      +PP   LLNQ++ +K+D  N+LLW+ +ALPI+ +YK EGHLTG
Sbjct: 8  VEFLTTNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTG 59

The following BLAST results are available for this feature:
BLAST of ClCG06G011650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151683.18.7e-0769.77uncharacterized protein LOC111019598 [Momordica charantia][more]
KAA0066132.11.1e-0662.79putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak... [more]
XP_016902203.17.3e-0659.52PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902205.17.3e-0659.52PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo][more]
XP_016902197.17.3e-0659.52PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
BLAST of ClCG06G011650 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G011650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DCW44.2e-0769.77uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7VCS15.5e-0762.79Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m... [more]
A0A5A7SIT73.6e-0658.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BVJ13.6e-0650.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1E03.6e-0650.00Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ... [more]
BLAST of ClCG06G011650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G011650.1ClCG06G011650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity
molecular_function GO:0003676 nucleic acid binding