ClCG06G010690 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G010690
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCG_Chr06: 22999582 .. 23000112 (+)
RNA-Seq ExpressionClCG06G010690
SyntenyClCG06G010690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCCTGCTCCATCAAGATTCTTGGATCCACAACAGTTGCAGCCTAATCCTGATTTTCTGGTATGGGAAAGGTATAATCGTTTTATTATGTGCTGGATATATTCCTCTTTATCTAAAGAGAATATGGGTGAAATAGTAAGTTTAGATGCTGCTGCTATTTGGGAATCTTTGAAACGTGCTTATGATTCGAATACTATTGCATGAATTATGGGTCTGAAAACGCAATTACAACGTATTAGGAAGGATGGATTATCTGTTAGTCAATATTTAGCTCAAATTAAAGAAGTTGCTGATAAATTTTCTGCTATTGGTGAACTTATTTCTTATGGAGATCATATTGCCCATATTTTGGATGGTTTAGGAAGTGAATATAATGCATTTGTCACATCTATTCAAAATCAGTCTGACCAACCATCCCTTGAGGATGTTAGGAGCTTACTTTTAGCTTATGAAAGTCGTTTGGAGAAACAAAACTTAGTTAATCAGCTCAATGTTGCTCAGGCTAATTTTGCAAATCTCTCTCTTTAA

mRNA sequence

ATGGTCCCTGCTCCATCAAGATTCTTGGATCCACAACAGTTGCAGCCTAATCCTGATTTTCTGGTATGGGAAAGGAAGGATGGATTATCTGTTAGTCAATATTTAGCTCAAATTAAAGAAGTTGCTGATAAATTTTCTGCTATTGGTGAACTTATTTCTTATGGAGATCATATTGCCCATATTTTGGATGGTTTAGGAAGTGAATATAATGCATTTGTCACATCTATTCAAAATCAGTCTGACCAACCATCCCTTGAGGATGTTAGGAGCTTACTTTTAGCTTATGAAAGTCGTTTGGAGAAACAAAACTTAGTTAATCAGCTCAATGTTGCTCAGGCTAATTTTGCAAATCTCTCTCTTTAA

Coding sequence (CDS)

ATGGTCCCTGCTCCATCAAGATTCTTGGATCCACAACAGTTGCAGCCTAATCCTGATTTTCTGGTATGGGAAAGGAAGGATGGATTATCTGTTAGTCAATATTTAGCTCAAATTAAAGAAGTTGCTGATAAATTTTCTGCTATTGGTGAACTTATTTCTTATGGAGATCATATTGCCCATATTTTGGATGGTTTAGGAAGTGAATATAATGCATTTGTCACATCTATTCAAAATCAGTCTGACCAACCATCCCTTGAGGATGTTAGGAGCTTACTTTTAGCTTATGAAAGTCGTTTGGAGAAACAAAACTTAGTTAATCAGCTCAATGTTGCTCAGGCTAATTTTGCAAATCTCTCTCTTTAA

Protein sequence

MVPAPSRFLDPQQLQPNPDFLVWERKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPSLEDVRSLLLAYESRLEKQNLVNQLNVAQANFANLSL
Homology
BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34
Identity = 87/173 (50.29%), Postives = 102/173 (58.96%), Query Frame = 0

Query: 5   PSRFLDPQQLQPNPDFLVWE---------------------------------------- 64
           P +FLD  QLQPNP +  WE                                        
Sbjct: 66  PPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRVYD 125

Query: 65  -----------------RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGS 121
                            RKDG SVSQYLA+IKE+ADKF+A+GE +SY DH+AH+LDGLGS
Sbjct: 126 SKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGS 185

BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 134.4 bits (337), Expect = 6.4e-28
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 0

Query: 25  RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPS 84
           +KDGLSVSQYLA+IKE+  K S+IGE IS  DHI++I++GLG EYNAFVTSIQN+SD  +
Sbjct: 12  KKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNRSDMXT 71

Query: 85  LEDVRSLLLAYESRLEKQNLVNQLNVAQANFANLSL 121
           LEDVR+LLLAY+ RLEKQN V+QLNV QAN ANL L
Sbjct: 72  LEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQL 107

BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 8.4e-28
Identity = 67/95 (70.53%), Postives = 80/95 (84.21%), Query Frame = 0

Query: 25  RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPS 84
           RKD LS+SQYL+QIK+VADKFS +GE ISY DH+ HILDGLGSEYNAFVTSIQN  D  S
Sbjct: 11  RKDNLSLSQYLSQIKDVADKFSVVGESISYRDHLTHILDGLGSEYNAFVTSIQNHVDNLS 70

Query: 85  LEDVRSLLLAYESRLEKQNLVNQLNVAQANFANLS 120
           +EDV SLLL+YE++LEKQN ++ LN+AQA  + LS
Sbjct: 71  VEDVWSLLLSYEAQLEKQNAIDHLNIAQAYLSKLS 105

BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 8.7e-25
Identity = 59/96 (61.46%), Postives = 81/96 (84.38%), Query Frame = 0

Query: 25  RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPS 84
           +KDGL+VSQYLAQIK+V D F+AIGE +SY DH+++IL+GLGSEYN FV+SI N++++PS
Sbjct: 40  KKDGLTVSQYLAQIKDVLDNFAAIGEPLSYRDHLSYILEGLGSEYNPFVSSIHNRTNRPS 99

Query: 85  LEDVRSLLLAYESRLEKQNLVNQLNVAQANFANLSL 121
           + DVR+LL+ Y+SRLEKQ   + L + QAN A+LS+
Sbjct: 100 IADVRNLLITYDSRLEKQTATDHLQLIQANVAHLSI 135

BLAST of ClCG06G010690 vs. NCBI nr
Match: CAN77126.1 (hypothetical protein VITISV_013628 [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 5.8e-21
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 0

Query: 3   PAPSRFLDPQQLQPNPDFLVWER--------------------KDGLSVSQYLAQIKEVA 62
           P P++FLD  QLQ NP F+ WER                    K+G+++S+YLA+IKEV 
Sbjct: 35  PIPAKFLDDAQLQINPLFIQWERMNRLVMSWIYSSLTLAMKIKKEGITISEYLARIKEVF 94

Query: 63  DKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPSLEDVRSLLLAYESRLEKQ 120
           DK+SA+GE +SY D + + L+GL  EY+ FVTSI N+SD+ SL++V SLL  Y   LE++
Sbjct: 95  DKYSAMGEPLSYRDKLMYTLNGLTEEYDGFVTSIYNRSDKSSLKEVHSLLYTYAYWLEQR 154

BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34
Identity = 87/173 (50.29%), Postives = 102/173 (58.96%), Query Frame = 0

Query: 5   PSRFLDPQQLQPNPDFLVWE---------------------------------------- 64
           P +FLD  QLQPNP +  WE                                        
Sbjct: 66  PPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRVYD 125

Query: 65  -----------------RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGS 121
                            RKDG SVSQYLA+IKE+ADKF+A+GE +SY DH+AH+LDGLGS
Sbjct: 126 SKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGLGS 185

BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.1e-28
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 0

Query: 25  RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPS 84
           +KDGLSVSQYLA+IKE+  K S+IGE IS  DHI++I++GLG EYNAFVTSIQN+SD  +
Sbjct: 12  KKDGLSVSQYLAKIKEITGKLSSIGEPISLKDHISYIIEGLGIEYNAFVTSIQNRSDMXT 71

Query: 85  LEDVRSLLLAYESRLEKQNLVNQLNVAQANFANLSL 121
           LEDVR+LLLAY+ RLEKQN V+QLNV QAN ANL L
Sbjct: 72  LEDVRTLLLAYDYRLEKQNSVDQLNVVQANVANLQL 107

BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A5BPS3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 0

Query: 3   PAPSRFLDPQQLQPNPDFLVWER--------------------KDGLSVSQYLAQIKEVA 62
           P P++FLD  QLQ NP F+ WER                    K+G+++S+YLA+IKEV 
Sbjct: 35  PIPAKFLDDAQLQINPLFIQWERMNRLVMSWIYSSLTLAMKIKKEGITISEYLARIKEVF 94

Query: 63  DKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPSLEDVRSLLLAYESRLEKQ 120
           DK+SA+GE +SY D + + L+GL  EY+ FVTSI N+SD+ SL++V SLL  Y   LE++
Sbjct: 95  DKYSAMGEPLSYRDKLMYTLNGLTEEYDGFVTSIYNRSDKSSLKEVHSLLYTYAYWLEQR 154

BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A5C7IHH0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 47/80 (58.75%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 25  RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPS 84
           +K+G +++QYL Q KE+ DKF+AIGE +SY DH+ ++L+GLG EY+AFVTSI+N+ D+PS
Sbjct: 84  KKEGTTINQYLFQFKEIVDKFAAIGEPLSYRDHLGYLLEGLGHEYDAFVTSIENRVDKPS 143

Query: 85  LEDVRSLLLAYESRLEKQNL 105
           +EDV SLLL++E RL K+ L
Sbjct: 144 IEDVESLLLSHERRLSKETL 163

BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A438FTV3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_055887 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 0

Query: 25  RKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPS 84
           +KDGLS+ +Y+ ++K + +  +AIGE +S  DH+ ++  GL  EYN FVTSIQN+SDQP+
Sbjct: 127 KKDGLSIGEYIQKLKSICNSLAAIGEPVSKKDHLIYLFSGLDREYNPFVTSIQNRSDQPT 186

Query: 85  LEDVRSLLLAYESRLEKQNLVNQLNVAQANFANLS 120
           +E + SLLL+Y+ RLE+QN V+ LN AQ + A+L+
Sbjct: 187 IEQIHSLLLSYDFRLEQQNFVS-LNSAQVHMAHLN 220

BLAST of ClCG06G010690 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 29/93 (31.18%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 27  DGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPSLE 86
           D LSV +Y  ++K ++D  + +   IS    + H+L+GL  +Y+  +  I+++S  PS  
Sbjct: 129 DDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFT 188

Query: 87  DVRSLLLAYESRLEKQNLVNQLNVAQANFANLS 120
           + RS+LL  ESRL  +   ++ +++  N  +LS
Sbjct: 189 EARSMLLMEESRLSNK---SKSSLSHTNHPSLS 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.13.5e-3450.29uncharacterized protein LOC111022315 [Momordica charantia][more]
XP_022148871.16.4e-2871.88uncharacterized protein LOC111017438 [Momordica charantia][more]
XP_038891713.18.4e-2870.53uncharacterized protein LOC120081111 [Benincasa hispida][more]
XP_038887133.18.7e-2561.46uncharacterized protein LOC120077323 [Benincasa hispida][more]
CAN77126.15.8e-2144.53hypothetical protein VITISV_013628 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DQX71.7e-3450.29uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1D6N73.1e-2871.88uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A5BPS32.8e-2144.53Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1[more]
A0A5C7IHH02.0e-1958.75Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1[more]
A0A438FTV32.9e-1850.53Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_055887 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G48050.12.5e-0631.18CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..120
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 26..101
e-value: 1.1E-12
score: 47.8
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 25..115
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 25..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G010690.1ClCG06G010690.1mRNA