ClCG06G010690 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCCCTGCTCCATCAAGATTCTTGGATCCACAACAGTTGCAGCCTAATCCTGATTTTCTGGTATGGGAAAGGTATAATCGTTTTATTATGTGCTGGATATATTCCTCTTTATCTAAAGAGAATATGGGTGAAATAGTAAGTTTAGATGCTGCTGCTATTTGGGAATCTTTGAAACGTGCTTATGATTCGAATACTATTGCATGAATTATGGGTCTGAAAACGCAATTACAACGTATTAGGAAGGATGGATTATCTGTTAGTCAATATTTAGCTCAAATTAAAGAAGTTGCTGATAAATTTTCTGCTATTGGTGAACTTATTTCTTATGGAGATCATATTGCCCATATTTTGGATGGTTTAGGAAGTGAATATAATGCATTTGTCACATCTATTCAAAATCAGTCTGACCAACCATCCCTTGAGGATGTTAGGAGCTTACTTTTAGCTTATGAAAGTCGTTTGGAGAAACAAAACTTAGTTAATCAGCTCAATGTTGCTCAGGCTAATTTTGCAAATCTCTCTCTTTAA ATGGTCCCTGCTCCATCAAGATTCTTGGATCCACAACAGTTGCAGCCTAATCCTGATTTTCTGGTATGGGAAAGGAAGGATGGATTATCTGTTAGTCAATATTTAGCTCAAATTAAAGAAGTTGCTGATAAATTTTCTGCTATTGGTGAACTTATTTCTTATGGAGATCATATTGCCCATATTTTGGATGGTTTAGGAAGTGAATATAATGCATTTGTCACATCTATTCAAAATCAGTCTGACCAACCATCCCTTGAGGATGTTAGGAGCTTACTTTTAGCTTATGAAAGTCGTTTGGAGAAACAAAACTTAGTTAATCAGCTCAATGTTGCTCAGGCTAATTTTGCAAATCTCTCTCTTTAA ATGGTCCCTGCTCCATCAAGATTCTTGGATCCACAACAGTTGCAGCCTAATCCTGATTTTCTGGTATGGGAAAGGAAGGATGGATTATCTGTTAGTCAATATTTAGCTCAAATTAAAGAAGTTGCTGATAAATTTTCTGCTATTGGTGAACTTATTTCTTATGGAGATCATATTGCCCATATTTTGGATGGTTTAGGAAGTGAATATAATGCATTTGTCACATCTATTCAAAATCAGTCTGACCAACCATCCCTTGAGGATGTTAGGAGCTTACTTTTAGCTTATGAAAGTCGTTTGGAGAAACAAAACTTAGTTAATCAGCTCAATGTTGCTCAGGCTAATTTTGCAAATCTCTCTCTTTAA MVPAPSRFLDPQQLQPNPDFLVWERKDGLSVSQYLAQIKEVADKFSAIGELISYGDHIAHILDGLGSEYNAFVTSIQNQSDQPSLEDVRSLLLAYESRLEKQNLVNQLNVAQANFANLSL Homology
BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia]) HSP 1 Score: 155.2 bits (391), Expect = 3.5e-34 Identity = 87/173 (50.29%), Postives = 102/173 (58.96%), Query Frame = 0
BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia]) HSP 1 Score: 134.4 bits (337), Expect = 6.4e-28 Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_038891713.1 (uncharacterized protein LOC120081111 [Benincasa hispida]) HSP 1 Score: 134.0 bits (336), Expect = 8.4e-28 Identity = 67/95 (70.53%), Postives = 80/95 (84.21%), Query Frame = 0
BLAST of ClCG06G010690 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida]) HSP 1 Score: 124.0 bits (310), Expect = 8.7e-25 Identity = 59/96 (61.46%), Postives = 81/96 (84.38%), Query Frame = 0
BLAST of ClCG06G010690 vs. NCBI nr
Match: CAN77126.1 (hypothetical protein VITISV_013628 [Vitis vinifera]) HSP 1 Score: 111.3 bits (277), Expect = 5.8e-21 Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 0
BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34 Identity = 87/173 (50.29%), Postives = 102/173 (58.96%), Query Frame = 0
BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A6J1D6N7 (uncharacterized protein LOC111017438 OS=Momordica charantia OX=3673 GN=LOC111017438 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 3.1e-28 Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 0
BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A5BPS3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013628 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21 Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 0
BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A5C7IHH0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_003685 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19 Identity = 47/80 (58.75%), Postives = 67/80 (83.75%), Query Frame = 0
BLAST of ClCG06G010690 vs. ExPASy TrEMBL
Match: A0A438FTV3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_055887 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18 Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 0
BLAST of ClCG06G010690 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06 Identity = 29/93 (31.18%), Postives = 54/93 (58.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|