ClCG06G009600 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G009600
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein
LocationCG_Chr06: 16625941 .. 16627599 (+)
RNA-Seq ExpressionClCG06G009600
SyntenyClCG06G009600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATCCAAAGATCCAACATGAGAGATAAAAGCTTCCCAACTTCGACAAATCTATTGAATGGAAAAATTCGCATAGACTTAGATAGAGAACACCAAGCGGAAGCGTCGAGCCTTGCTACTTCAAAACAATCGAACCACTAAAGATGCTTTTCATGGAAAACAGAAAACTTTCTAGTTAATCATAGTAAATACACGTTATTGACTATGGCAAAATAATTTTGCCAGTGCAAAAAAGCAAACTTCATTTTACAGCTTTTCAAAGCATATGCATTATTGACTATAAATTTCCTTTTATGTATGATATTCATCAGTTAGAAAGATATTAAGTTAGCTTTTAAAAATTAGCACAACTTGCAGCTTCCAAACCCAGGATATGATTATGCAAGATACATTTTAAAGAAAATATCATGGTTTCATATTACCCTACCAATACATAGAATTTTTGTTCCTAGGGGATGAATAATAGAGAATGAAAAAATAATTTATTACTTAAGCCCAATTTGATAACCATTTCGTTTTTTGCTTTACAAAATTGTGATTGCTTTCTCACCATTTCCTTACCATATCTTTCATCTTTACCAAGTAAAGATTCGGATCCTTAGCCAATTTCCAAAAACAAAAATAAGTTTCTTAAAACTAGATTTTTTAGTTTTCAAATTTTGCCTTGGATTTTGAAAACACTCCTAAAAGGTAGAAATAAAACAAAGAAAACAATAGATGTAATTAGTGTTTGTAAGCTTAATTTTCAAAAACCAAATGATCGTTAGACCGGACCGTAGTAATTGGTTTTATTTAACAACAAATTCATCAAGCAAATATGTTCTCTAATACAAACTCATTTTTATGACTATACTTCTAATTAATGCTTCATATTAATTTTCGTACTCCATGCTAAATTTTACTAGTTAATTCATTATTTAGCATTAATATTTTAATGGTTAACTTACAAATTCGGTCCCCATGGCCTAAATTTTGAGGTTTGTATTTATTTGGTTCCTAAACTTTCAAAATTACAAATTTGGTCCCTAAACTTGGAATTTTGAATGTGTAGGGTTCCACACTCGAAATTCAAATTTATATTTAATAGATAAATTAATTTTCAAATTTTAAAATAAAAAAATTTAAAGATCTATTAGACAATTTTGAAAGTCTAGGAACCAAATAGACACATACCTTAAAGTTCAGAAACTAAACTTGTTATTTAACCTGTGTAGTGGAGTGTTTGGTGTGTAAAGCTCAAATCATGGCGAGCATGGCCTTGGTAGATTGAAGCATCAAAATTTTGCTTTGTTAGAAAAATGGCAATGGCGATTTGTGAACGAAACTAATTCTTCTTTTAGACAAGTCAATGGTAGCATTCATGGATCCAGTCAATTTGATTGCCATTCGAAAGGCAAGGGCAATCTAAGTCTCAAGAGTCCGTAGATGAGTATTTCTTCCTCATGGAAGAAAGTGGAAACCATGTTGATATTTAAAGTCAGCAATGGCAAGCAAAAGAACTTCTTTTTGGAAGGACCCCGGTTGAATGGAGTTGTTTTAAAGGACATGTTTCCTAGTTTAGCTGGCCTTGTTGATGATTTAGAAGCTTCAGTTCTCTCTTATTGGGATGTTACCACTCCCTTGGAATTTTATATTTTGAAGATTTCTAAAAGATGA

mRNA sequence

ATGCAAATCCAAAGATCCAACATGAGAGATAAAAGCTTCCCAACTTCGACAAATCTATTGAATGGAAAAATTCGCATAGACTTAGATAGAGAACACCAAGCGGAAGCCTCAAATCATGGCGAGCATGGCCTTGGTAGATTGAAGCATCAAAATTTTGCTTTGTTAGAAAAATGGCAATGGCGATTTGTGAACGAAACTAATTCTTCTTTTAGACAAGTCAATGGTAGCATTCATGGATCCAGTCAATTTGATTGCCATTCGAAAGGCAAGGGCAATCTAAGTCTCAAGAGTCCCAATGGCAAGCAAAAGAACTTCTTTTTGGAAGGACCCCGGTTGAATGGAGTTGTTTTAAAGGACATGTTTCCTAGTTTAGCTGGCCTTGTTGATGATTTAGAAGCTTCAGTTCTCTCTTATTGGGATGTTACCACTCCCTTGGAATTTTATATTTTGAAGATTTCTAAAAGATGA

Coding sequence (CDS)

ATGCAAATCCAAAGATCCAACATGAGAGATAAAAGCTTCCCAACTTCGACAAATCTATTGAATGGAAAAATTCGCATAGACTTAGATAGAGAACACCAAGCGGAAGCCTCAAATCATGGCGAGCATGGCCTTGGTAGATTGAAGCATCAAAATTTTGCTTTGTTAGAAAAATGGCAATGGCGATTTGTGAACGAAACTAATTCTTCTTTTAGACAAGTCAATGGTAGCATTCATGGATCCAGTCAATTTGATTGCCATTCGAAAGGCAAGGGCAATCTAAGTCTCAAGAGTCCCAATGGCAAGCAAAAGAACTTCTTTTTGGAAGGACCCCGGTTGAATGGAGTTGTTTTAAAGGACATGTTTCCTAGTTTAGCTGGCCTTGTTGATGATTTAGAAGCTTCAGTTCTCTCTTATTGGGATGTTACCACTCCCTTGGAATTTTATATTTTGAAGATTTCTAAAAGATGA

Protein sequence

MQIQRSNMRDKSFPTSTNLLNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSPNGKQKNFFLEGPRLNGVVLKDMFPSLAGLVDDLEASVLSYWDVTTPLEFYILKISKR
Homology
[Close]
BLAST of ClCG06G009600 vs. NCBI nr
Match: KAA0032570.1 (protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-08
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0 

Query: 20  LNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHG 79
           LN  ++ +L  + Q +    GE GL +LK +N ALL KW+WRF++E +S + +V  SIH 
Sbjct: 196 LNNLVKWELVTKSQGD----GELGLDKLKIRNMALLAKWRWRFLDEPSSLWCKVVRSIHD 255

Query: 80  SSQFDCHSKGKGNLSLKSP--------------------NGKQKNFFLEGPRLNGVVLKD 139
           S  F  H+ GK + SL+SP                     G +  F+L+ P +N + L  
Sbjct: 256 SDTFIWHTSGKESSSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLD-PWMNSIALWI 315

Query: 140 MFPSLAGLVDDLEASVLSYWD 141
            FP L  +    + SV +YWD
Sbjct: 316 KFPRLYRIALPPKGSVTNYWD 331

[Close]
BLAST of ClCG06G009600 vs. NCBI nr
Match: KAA0057306.1 (uncharacterized protein E6C27_scaffold280G001490 [Cucumis melo var. makuwa] >TYK13430.1 uncharacterized protein E5676_scaffold496G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-07
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 43 GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP 99
          G G L+++N ALL KW WRF+NE NS + QV  SIHG S+F  H+KG  + SL SP
Sbjct: 8  GFGGLENKNLALLAKWGWRFINEENSLWVQVVKSIHGGSEFSWHTKGSVSCSLHSP 63

[Close]
BLAST of ClCG06G009600 vs. NCBI nr
Match: KAA0043277.1 (hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK29341.1 hypothetical protein E5676_scaffold129G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-05
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 43 GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP 99
          GLG +K QN ALL KW WRF  E  S +RQV  S+H    FD H+ GK N  LKSP
Sbjct: 41 GLGGIKIQNTALLAKWGWRFSMEDTSIWRQVIRSMHSKGAFDLHTVGKFNNGLKSP 96

[Close]
BLAST of ClCG06G009600 vs. ExPASy TrEMBL
Match: A0A5A7SP09 (Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00570 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0 

Query: 20  LNGKIRIDLDREHQAEASNHGEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHG 79
           LN  ++ +L  + Q +    GE GL +LK +N ALL KW+WRF++E +S + +V  SIH 
Sbjct: 196 LNNLVKWELVTKSQGD----GELGLDKLKIRNMALLAKWRWRFLDEPSSLWCKVVRSIHD 255

Query: 80  SSQFDCHSKGKGNLSLKSP--------------------NGKQKNFFLEGPRLNGVVLKD 139
           S  F  H+ GK + SL+SP                     G +  F+L+ P +N + L  
Sbjct: 256 SDTFIWHTSGKESSSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLD-PWMNSIALWI 315

Query: 140 MFPSLAGLVDDLEASVLSYWD 141
            FP L  +    + SV +YWD
Sbjct: 316 KFPRLYRIALPPKGSVTNYWD 331

[Close]
BLAST of ClCG06G009600 vs. ExPASy TrEMBL
Match: A0A5A7UT27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 43 GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP 99
          G G L+++N ALL KW WRF+NE NS + QV  SIHG S+F  H+KG  + SL SP
Sbjct: 8  GFGGLENKNLALLAKWGWRFINEENSLWVQVVKSIHGGSEFSWHTKGSVSCSLHSP 63

[Close]
BLAST of ClCG06G009600 vs. ExPASy TrEMBL
Match: A0A5A7TN98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00510 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.6e-06
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 43 GLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSSQFDCHSKGKGNLSLKSP 99
          GLG +K QN ALL KW WRF  E  S +RQV  S+H    FD H+ GK N  LKSP
Sbjct: 41 GLGGIKIQNTALLAKWGWRFSMEDTSIWRQVIRSMHSKGAFDLHTVGKFNNGLKSP 96

[Close]
BLAST of ClCG06G009600 vs. ExPASy TrEMBL
Match: A0A2U1Q644 (RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA069900 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0 

Query: 40  GEHGLGRLKHQNFALLEKWQWRFVNETNSSFRQVNGSIHGSS-QFDCHSKGKGNLSLKSP 99
           G  G+G +K +N  LL KW+WRF+NE  + +R++   IHGSS  FD     K N +  S 
Sbjct: 132 GRLGVGSIKTKNIGLLGKWKWRFINEQGALWRKIIAEIHGSSGGFDTMGGSKNNSTWSSI 191

Query: 100 NGKQKNFFLEGPRLNGVVLKDMF 122
            G        G  LN ++++ ++
Sbjct: 192 VGSCNRIEQLGVPLNNLMVRKIY 214

The following BLAST results are available for this feature:
BLAST of ClCG06G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032570.13.3e-0834.04protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo v... [more]
KAA0057306.16.2e-0755.36uncharacterized protein E6C27_scaffold280G001490 [Cucumis melo var. makuwa] >TYK... [more]
KAA0043277.12.0e-0555.36hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK293... [more]
BLAST of ClCG06G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G009600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SP091.6e-0834.04Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UT273.0e-0755.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TN989.6e-0655.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2U1Q6449.0e-0434.94RNA-directed DNA polymerase, eukaryota, Reverse transcriptase zinc-binding domai... [more]
BLAST of ClCG06G009600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G009600.1ClCG06G009600.1mRNA