ClCG06G007940 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G007940
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy1-copia retrotransposon protein
LocationCG_Chr06: 10323209 .. 10327651 (+)
RNA-Seq ExpressionClCG06G007940
SyntenyClCG06G007940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGAGAGCTTTTGGACCCTTTTTATAGATCCCAAGATGTGGTGGTGGATGCTGAAGATGGGGTGTCCATGGGTTGCCCTAATTTGCAAGATTGAAGGAGAAAATCTCAAAATCAAGCCCACAATTAGATCTGAAAATTTAATTTTGTTGTTGCAGATTGCTGGATTGAATACTGCCAACAAATTTTCTGCAAAAATACACCAAAATTAAAAAGAATATTGTCAAATTCACTCTTTTTTCACATTTAAGATCAAACATGCCATCTATGAATTATTTGCTATTTTTAAACTTGGTTTTTCTATGAAAAGTACTAAATGTATGCAATTTTCATCAAAATCCTTTGGATTAAAAGCTAAATAATTCTAAAAAATGAGAATTATCATAACCACGTTACATAAGAACAGTCATAAACAAATGTAACAAAATACCAAAACCTCTATTGGACTTAATAGGACACAGACCCCAAACATCAAAATGGACTAATTCAAATGTAATCTAGTCATTTTCTGCCCGTTTCTTCTTCTTTCTCTTTTTTATACAGAAGAGTGTGGTTCAGATCTGAGACAGGTTATTTTTTCCAGCTTTCTCTTCTTCTTCTTCCACTATTTCTGAGTTATATTTTTCTTTGATTCTATTCCTTTCTCCAACGGGTGCACATCTAAGATTGGAGGTAGTGTAAACCTTAGGGAGCAATTGGCAATTGCAATTTAGCACCAGGTCACGTCCAATTTTGCTCTCAAGGTAATGGATCTTCCACGACATAACAACAATCTGATTTGGAACTACAATTTAAAAGTAAAATTTACCATTCTTTATTGTTTGAAATGTCGATTAAAACCAGAAAGGTCCTCCCCAATCTGTCTAAATTGGAGCCACTCCATGCAACAAATTATCACTGTTAGTCCCAGAAGTTGCTAATCTCTTTCAATCTGTCTAAATTGAAGCCACTCCATGGAGCAAATTATCGCTATTAGTCCCAGAAGTTGCTAATCTCCTTCGAGCAGCTAGAGATTGATTACATCCTCACCATAGAATATCCTAACAAGACGGTTCCTTCTACCAAAGTAGTGCTTGCTGCCAATGATCCAGAATCGTCCAAAGATGTTATTAATTTGTCCATTCGAAACAGTCCTCTAATGTTGATCCCAAAAAATTTGAGGAAGATAACAAAAAAGTCAATGGTCATCTACTCAACCATATGACGAATTCATTAGTCAAAAAATCAGGAAAGGTAATATGGAACACTTTGGAGTCCGAACATCGAGGAGACGATGCAGGCAATAAGAAGTATGTTGTTAGAAAATTGCTACAATTCCAAATGATGGATGATAAACTAATTTTGGATCAAGTTCATGAGTATGAGAATCTGGTGGCGAATGTGTTGTCCGAAGGTATTGAAATGTGAAAAATTCTCCCAGTGAATGTGTTGCTGAAGAAATTTCCTCCCTCCTGGAGCAACTACTGTAATCATCTTAAACATAAGAAAAATGATTTAACTTTACAGAAATTGATCAATCACATGCATATGGAAGAAGCCAATCGATAAAAAAATAAGTTGATTTCTCAAACTTTGAATTCAGTAAATGCTAACTTAATTAAATCTTTTGTTGCAAACAACGACATGTTTAAAAATAAAGGAAAGTAAAATACGAATAGTATGTCACAACAAAAGAAGGGACATTAGTTCACGGCTAGTGGTCGTAGAATTGAAAAATCCAAACTAGTGTGTTATGTGTGTGGAAAGCCAGGACATAAGTCAAATCAATTCAACCAAAGGAAAGGAAGGCCTGATAAGAAACTAGCTCCACAAAACCAACCTTGCTGAGCAAGATGACGTTATTGTTGTTGTGGTTGTGGAAGCAAATCTGTTGGAGAACAAGTCTGATTGGATTCTTGATATTGGAGCCTCAAGGCCCTTCTGTTCAAATCGAGACTTGTTCCATAAGTTTGAAGATTCTACCAATCGAGAATTTATATTCATGGGTAACTCTACCACTGCAAAAACTTATCTTTGGAAAAACTCTTTCGTTAAGTAACGTTTTGATTTTATCTTCATTTGGTAGGAATTTGGTGTTTGGAAATCTATTGAACCGGGTTGGGATTAGAATTGTATTTGAAGTTGACAAGGTTCCTATTTCAAATTTAATGAATGTAAGTGTTTCTAATTCTGCTTATATAGTTGAATCTATTGATGTGCGACATGTAAGATTAAGTCATGTCAATTTCACATCGATAAAAAAAAAAACTTAAAGCATTAAATTTGATTAATGCATCTGAAACACATGAAATTGGTAAATGTGCTATATGTGTAGAAGCAATGTTTACCAATAAACCTTTTAAACATGTCACCACTAGATGTTCAAAATTGCTTGAATTAGTTCATACTGACTTGGCTAATTTAAAAAACACTGCTAGTAGAGGTGGGAAAAATTACTATATCACCTTTATTGATGATTTTTTAGGTATACTAAAATTTATCTTTTAAAAAAAAAGGATGAAGCATATGATATGTTTTTTAAATAAAAAGAAAAAGTAGAAAATCAATTGGATAAGCATATATCCCATGATCAAAGTAGATAATGAATAAGTTCAAAAACATCTAATAGTGATAAAATATCTGTTTTTTTTTTTTTTTTTTTTTCCTTCTTCTTCTGATAGTATGCATGAAATTGAACCTAGAAGAAGTAAAGGACAAAAACCTGAGAAAAAATTCAGTCCTGATTTCTTAACTACTTTTTAAGTTGAAAGGTCAATTGATATAGATAATCAATGTGCATGTATGTATTTAATAGATGAGGATTCCAAAACTTATCAAGAGGCCTTAAGTTCTGTAGACTTATGGAAAGAAGCTATTAAGAGTATATTGGGCTCTGTAACTATGAGTCAAACTTCGGACTTGGTGGATTAATTGAAAGATATAAGGTTAGATTAGTAGCAAAAGAGTATACACAAATGCAAGGTATTGACTATGTTGATACGTATTCTCATTAGGGGTGATAGTCGGTTCGATTTTGTCGGTTTTGGGGTTAACTAAGAACCAAACTGAACCAATCGATTTTACAAAGAAGAGATCCAAACCAATGTTTAATAAAGAACAAAACCAATGGATTGATTTGTATTTGGTTACATTTATTATAAGTTTGGTTCTTGATTTTTGATATTTTCTTTTTTTCTTCCAAATTTCAATTTTTATTTCCAATTTTGTTTTTAATTGGTTCTTTTTGCTAATTTTAAATTAAAATTAAGTCCATTTTTTTTATATAGATTGAAATTGGACATTTTTTTTCTCGGAACTTTCTAAATAAAAAACATACACACTCCATAATAATTGGTCTTTTTCTAAACAATACATATATATGCACCATAATAATTAAAACAATAAAAGATACTCAATGTCAGAGTTTATTTTTAAAGGTATATATACCATCGATTTTGATTGGTTTTTCCAATCGAATTCCTGTCCAAATCAATACTTTTTTGTTTTCTCCAAATACAAACCAATATAGTCTTCTCAAAATCTCAAAAGTTACTAAGTTGGAATCTCATTCTAACTAAGGATTCTTGTGGTTCCTAAGAATCCAGCTACACAAGAACCAAGAATGGAGAGCTCAATAAAGTCGACAGAAAAGTCTCCAGAGTCGCTATAGTCTAGGCTCTCACTCACGTTATCCGTCCTGTGACTCTATTACGTTACTTGCCCTATTAACTAGCCAGAGGCAACCATGAAAATTCATTAATTTCAACCTGCCTCAAGTTCTCTATTGTACAGCGAAACTCGCTAATAATATATATATGTTTCCCCAAGAACCAGACCTACATGCAAGAAGAATGTATATCTCCATTCGTCCTAACCAAATAGTCGAATCTATCTCTCAGCGATTAATTCTTTTCTCCACTAATAAACATTTCCCAACTAGTCTGCCCAATCGATTTTGTAAGATTGGCTAATTCAAAGGGGTTAATTTGGTTCAAAGTTGTTGGAACAAATCTTTTTCGCCTTCATCCTTTTGTTCACCCACCTTAGATGAGGTCGATCCCATGGCTATGATGGTCATTCTAGAGGTCACGCAACAACTTCCCACTTCGCCCATGAATCCTACCAATTCCTAGGGCCGTTCAACCCCTATCAAAACCCCAATCAACAACTATGGGCGGCTCAAGAGGCACTGCCAGAGGCTCCAGCACCAGCAGAAGTTCTGAACCTCGATCTGCATCCCCTAAGGCACTTCGAAGGGAAATTCACACGTTAGTAACGCAACAACTATGTTCAGAGTGTGAAAGAAGGCGAGTGCAGCCCCCACTTTCCAAAAATGAGAAATATGCATTCGGATGTAGCCAATAAAAATCTTTCTCATGATCTGGAAATATCCACAGAGATGGATGTCAAACCCCTCCACGAATGGATGGAGCAGATTAAGGATAACCCTGAAATCTGGTAG

mRNA sequence

ATGAATGGAGAGCTTTTGGACCCTTTTTATAGATCCCAAGATGTGGTGGTGGATGCTGAAGATGGGGTGTCCATGGACAGGTTATTTTTTCCAGCTTTCTCTTCTTCTTCTTCCACTATTTCTGAGTTATATTTTTCTTTGATTCTATTCCTTTCTCCAACGGGTGCACATCTAAGATTGGAGAAGTTGCTAATCTCCTTCGAGCAGCTAGAGATTGATTACATCCTCACCATAGAATATCCTAACAAGACGGTTCCTTCTACCAAAGTAGTGCTTGCTGCCAATGATCCAGAATCGTCCAAAGATGTTATTAATTTGTCCATTCGAAACAGAGACGATGCAGGCAATAAGAAGTATGTTGTTAGAAAATTGCTACAATTCCAAATGATGGATGATAAACTAATTTTGGATCAAGTTCATGAGTATGAGAATCTGGTGGCGAATGTGTTGTCCGAAGATGACGTTATTGTTGTTGTGGTTGTGGAAGCAAATCTGTTGGAGAACAAGTCTGATTGGATTCTTGATATTGGAGCCTCAAGGCCCTTCTGTTCAAATCGAGACTTGTTCCATAAGTTTGAAGATTCTACCAATCGAGAATTTATATTCATGGGTCGATCCCATGGCTATGATGGTCATTCTAGAGGTCACGCAACAACTTCCCACTTCGCCCATGAATCCTACCAATTCCTAGGGCCGTTCAACCCCTATCAAAACCCCAATCAACAACTATGGGCGGCTCAAGAGGCACTGCCAGAGGCTCCAGCACCAGCAGAAGTTCTGAACCTCGATCTGCATCCCCTAAGGCACTTCGAAGGGAAATTCACACAAGGCGAGTGCAGCCCCCACTTTCCAAAAATGAGAAATATGCATTCGGATGTAGCCAATAAAAATCTTTCTCATGATCTGGAAATATCCACAGAGATGGATGTCAAACCCCTCCACGAATGGATGGAGCAGATTAAGGATAACCCTGAAATCTGGTAG

Coding sequence (CDS)

ATGAATGGAGAGCTTTTGGACCCTTTTTATAGATCCCAAGATGTGGTGGTGGATGCTGAAGATGGGGTGTCCATGGACAGGTTATTTTTTCCAGCTTTCTCTTCTTCTTCTTCCACTATTTCTGAGTTATATTTTTCTTTGATTCTATTCCTTTCTCCAACGGGTGCACATCTAAGATTGGAGAAGTTGCTAATCTCCTTCGAGCAGCTAGAGATTGATTACATCCTCACCATAGAATATCCTAACAAGACGGTTCCTTCTACCAAAGTAGTGCTTGCTGCCAATGATCCAGAATCGTCCAAAGATGTTATTAATTTGTCCATTCGAAACAGAGACGATGCAGGCAATAAGAAGTATGTTGTTAGAAAATTGCTACAATTCCAAATGATGGATGATAAACTAATTTTGGATCAAGTTCATGAGTATGAGAATCTGGTGGCGAATGTGTTGTCCGAAGATGACGTTATTGTTGTTGTGGTTGTGGAAGCAAATCTGTTGGAGAACAAGTCTGATTGGATTCTTGATATTGGAGCCTCAAGGCCCTTCTGTTCAAATCGAGACTTGTTCCATAAGTTTGAAGATTCTACCAATCGAGAATTTATATTCATGGGTCGATCCCATGGCTATGATGGTCATTCTAGAGGTCACGCAACAACTTCCCACTTCGCCCATGAATCCTACCAATTCCTAGGGCCGTTCAACCCCTATCAAAACCCCAATCAACAACTATGGGCGGCTCAAGAGGCACTGCCAGAGGCTCCAGCACCAGCAGAAGTTCTGAACCTCGATCTGCATCCCCTAAGGCACTTCGAAGGGAAATTCACACAAGGCGAGTGCAGCCCCCACTTTCCAAAAATGAGAAATATGCATTCGGATGTAGCCAATAAAAATCTTTCTCATGATCTGGAAATATCCACAGAGATGGATGTCAAACCCCTCCACGAATGGATGGAGCAGATTAAGGATAACCCTGAAATCTGGTAG

Protein sequence

MNGELLDPFYRSQDVVVDAEDGVSMDRLFFPAFSSSSSTISELYFSLILFLSPTGAHLRLEKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESSKDVINLSIRNRDDAGNKKYVVRKLLQFQMMDDKLILDQVHEYENLVANVLSEDDVIVVVVVEANLLENKSDWILDIGASRPFCSNRDLFHKFEDSTNREFIFMGRSHGYDGHSRGHATTSHFAHESYQFLGPFNPYQNPNQQLWAAQEALPEAPAPAEVLNLDLHPLRHFEGKFTQGECSPHFPKMRNMHSDVANKNLSHDLEISTEMDVKPLHEWMEQIKDNPEIW
Homology
[Close]
BLAST of ClCG06G007940 vs. NCBI nr
Match: KAA0048277.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-24
Identity = 90/252 (35.71%), Postives = 113/252 (44.84%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESS--------------KDVI-- 120
           +KLLI FEQLE+DY+LT + P    P+T     ++DPESS              KD +  
Sbjct: 29  QKLLIFFEQLEVDYVLTTDLPTFDPPTT--TSTSSDPESSTGPLTTVAVTDQVKKDQVID 88

Query: 121 -------NLSIRNR--------------------------------DDAGNKKYVVRKLL 180
                  N ++R                                  DDAG KKYVV K L
Sbjct: 89  PEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKEIWSTLESRYGGDDAGRKKYVVGKWL 148

Query: 181 QFQMMDDKLILDQVHEYENLVANVLSE--------------------------------- 207
           QFQM DDK I++Q+HEYENLVANVLSE                                 
Sbjct: 149 QFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILEANILLEKFPPSWNDYRHKSYQCNQ 208

[Close]
BLAST of ClCG06G007940 vs. NCBI nr
Match: KAA0026033.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-23
Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 0 

Query: 98  ESSKDVINL--SIRNRDDAGNKKYVVRKLLQFQMMDDKLILDQVHEYENLVANVLSE--- 157
           +S+KD+ +   S    DDAG KKYVV K LQFQM DDK +++Q+HEYENLVANVLSE   
Sbjct: 113 KSAKDIWSTLESRYEGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGVK 172

Query: 158 -----------------------DDVIVVVVVEANLLENKSDWILDIGASRPFCSNRDLF 207
                                  D  I+  +VEANL+ENK+DWILD GASR FC+NR+L 
Sbjct: 173 MCEILQANVLLEKFPPSWNDYQQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELL 232

[Close]
BLAST of ClCG06G007940 vs. NCBI nr
Match: TYK30642.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-21
Identity = 81/227 (35.68%), Postives = 106/227 (46.70%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESS-----------KDV-INLSI 120
           +KLLI FEQLE DY+LT +  +    +T     +++PESS           +D+   L  
Sbjct: 29  KKLLIFFEQLEFDYVLTTDLSSSDPSAT--TSTSSNPESSTGPSTTVAVTDQDIWSTLES 88

Query: 121 RNRDDAGNKKYVVRKLLQFQMMDDKLILDQVHEYENLVANVLSE---------------- 180
           R  DDAG KKYVV K LQF+M DDK +++Q+HEYENLVANVLSE                
Sbjct: 89  RYGDDAGRKKYVVGKWLQFRMTDDKPVVEQIHEYENLVANVLSEGMKMCKILQANVLLEK 148

Query: 181 --------------------------------------------------------DDVI 204
                                                                   D  I
Sbjct: 149 FPLSWNDYRNHLKHKKKDLKLQELISHMRTEETNRLKDKKGRPSQKPTPQANLAEQDSEI 208

[Close]
BLAST of ClCG06G007940 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 7.1e-21
Identity = 87/280 (31.07%), Postives = 111/280 (39.64%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESSKDVI---------------- 120
           +KLLI FEQLE+DY+LT + P    P+T     ++DPESS   +                
Sbjct: 29  QKLLIFFEQLEVDYVLTTDLPTSDPPTT--TSTSSDPESSTGPLTAVAVTEQVKMDQVID 88

Query: 121 -------NLSIRNR--------------------------------DDAGNKKYVVRKLL 180
                  N ++R                                  DDAG KKYVV K L
Sbjct: 89  PEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWL 148

Query: 181 QFQMMDDKLILDQVHEYENLVANVLSE--------------------------------- 207
           QFQM DDK +++Q+HEYENLVANVLSE                                 
Sbjct: 149 QFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVIDRTKQEKGHKGKNSEKRQFK 208

[Close]
BLAST of ClCG06G007940 vs. NCBI nr
Match: XP_008445782.1 (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 7.1e-21
Identity = 87/280 (31.07%), Postives = 111/280 (39.64%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESSKDVI---------------- 120
           +KLLI FEQLE+DY+LT + P    P+T     ++DPESS   +                
Sbjct: 29  QKLLIFFEQLEVDYVLTTDLPTSDPPTT--TSTSSDPESSTGPLTAVAVTEQVKMDQVID 88

Query: 121 -------NLSIRNR--------------------------------DDAGNKKYVVRKLL 180
                  N ++R                                  DDAG KKYVV K L
Sbjct: 89  PEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWL 148

Query: 181 QFQMMDDKLILDQVHEYENLVANVLSE--------------------------------- 207
           QFQM DDK +++Q+HEYENLVANVLSE                                 
Sbjct: 149 QFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVIDRTKQEKGHKGKNSEKRQFK 208

[Close]
BLAST of ClCG06G007940 vs. ExPASy TrEMBL
Match: A0A5A7U214 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002010 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-24
Identity = 90/252 (35.71%), Postives = 113/252 (44.84%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESS--------------KDVI-- 120
           +KLLI FEQLE+DY+LT + P    P+T     ++DPESS              KD +  
Sbjct: 29  QKLLIFFEQLEVDYVLTTDLPTFDPPTT--TSTSSDPESSTGPLTTVAVTDQVKKDQVID 88

Query: 121 -------NLSIRNR--------------------------------DDAGNKKYVVRKLL 180
                  N ++R                                  DDAG KKYVV K L
Sbjct: 89  PEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKEIWSTLESRYGGDDAGRKKYVVGKWL 148

Query: 181 QFQMMDDKLILDQVHEYENLVANVLSE--------------------------------- 207
           QFQM DDK I++Q+HEYENLVANVLSE                                 
Sbjct: 149 QFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILEANILLEKFPPSWNDYRHKSYQCNQ 208

[Close]
BLAST of ClCG06G007940 vs. ExPASy TrEMBL
Match: A0A5A7SN16 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00180 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-23
Identity = 67/137 (48.91%), Postives = 86/137 (62.77%), Query Frame = 0 

Query: 98  ESSKDVINL--SIRNRDDAGNKKYVVRKLLQFQMMDDKLILDQVHEYENLVANVLSE--- 157
           +S+KD+ +   S    DDAG KKYVV K LQFQM DDK +++Q+HEYENLVANVLSE   
Sbjct: 113 KSAKDIWSTLESRYEGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGVK 172

Query: 158 -----------------------DDVIVVVVVEANLLENKSDWILDIGASRPFCSNRDLF 207
                                  D  I+  +VEANL+ENK+DWILD GASR FC+NR+L 
Sbjct: 173 MCEILQANVLLEKFPPSWNDYQQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELL 232

[Close]
BLAST of ClCG06G007940 vs. ExPASy TrEMBL
Match: A0A5D3E411 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00650 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-21
Identity = 81/227 (35.68%), Postives = 106/227 (46.70%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESS-----------KDV-INLSI 120
           +KLLI FEQLE DY+LT +  +    +T     +++PESS           +D+   L  
Sbjct: 29  KKLLIFFEQLEFDYVLTTDLSSSDPSAT--TSTSSNPESSTGPSTTVAVTDQDIWSTLES 88

Query: 121 RNRDDAGNKKYVVRKLLQFQMMDDKLILDQVHEYENLVANVLSE---------------- 180
           R  DDAG KKYVV K LQF+M DDK +++Q+HEYENLVANVLSE                
Sbjct: 89  RYGDDAGRKKYVVGKWLQFRMTDDKPVVEQIHEYENLVANVLSEGMKMCKILQANVLLEK 148

Query: 181 --------------------------------------------------------DDVI 204
                                                                   D  I
Sbjct: 149 FPLSWNDYRNHLKHKKKDLKLQELISHMRTEETNRLKDKKGRPSQKPTPQANLAEQDSEI 208

[Close]
BLAST of ClCG06G007940 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-21
Identity = 87/280 (31.07%), Postives = 111/280 (39.64%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESSKDVI---------------- 120
           +KLLI FEQLE+DY+LT + P    P+T     ++DPESS   +                
Sbjct: 29  QKLLIFFEQLEVDYVLTTDLPTSDPPTT--TSTSSDPESSTGPLTAVAVTEQVKMDQVID 88

Query: 121 -------NLSIRNR--------------------------------DDAGNKKYVVRKLL 180
                  N ++R                                  DDAG KKYVV K L
Sbjct: 89  PEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWL 148

Query: 181 QFQMMDDKLILDQVHEYENLVANVLSE--------------------------------- 207
           QFQM DDK +++Q+HEYENLVANVLSE                                 
Sbjct: 149 QFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVIDRTKQEKGHKGKNSEKRQFK 208

[Close]
BLAST of ClCG06G007940 vs. ExPASy TrEMBL
Match: A0A1S3BE75 (uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-21
Identity = 87/280 (31.07%), Postives = 111/280 (39.64%), Query Frame = 0 

Query: 61  EKLLISFEQLEIDYILTIEYPNKTVPSTKVVLAANDPESSKDVI---------------- 120
           +KLLI FEQLE+DY+LT + P    P+T     ++DPESS   +                
Sbjct: 29  QKLLIFFEQLEVDYVLTTDLPTSDPPTT--TSTSSDPESSTGPLTAVAVTEQVKMDQVID 88

Query: 121 -------NLSIRNR--------------------------------DDAGNKKYVVRKLL 180
                  N ++R                                  DDAG KKYVV K L
Sbjct: 89  PEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWL 148

Query: 181 QFQMMDDKLILDQVHEYENLVANVLSE--------------------------------- 207
           QFQM DDK +++Q+HEYENLVANVLSE                                 
Sbjct: 149 QFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVIDRTKQEKGHKGKNSEKRQFK 208

The following BLAST results are available for this feature:
BLAST of ClCG06G007940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048277.13.1e-2435.71ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0026033.15.8e-2348.91ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK30642.15.4e-2135.68ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK11299.17.1e-2131.07ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008445782.17.1e-2131.07PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo][more]
BLAST of ClCG06G007940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG06G007940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U2141.5e-2435.71Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SN162.8e-2348.91Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3E4112.6e-2135.68Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CM583.4e-2131.07Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3BE753.4e-2131.07uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=... [more]
BLAST of ClCG06G007940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G007940.1ClCG06G007940.1mRNA