ClCG06G004100 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G004100
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr06: 4675522 .. 4675860 (+)
RNA-Seq ExpressionClCG06G004100
SyntenyClCG06G004100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG

mRNA sequence

ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG

Coding sequence (CDS)

ATGCGCTCGTTCGCGGGGAGGCTTGAGAACTTTGGTCCCCTTGAAGACGCAGCCTTTCTATTTCGTAATATTGCTGATGAAGCCGACGTTAAAGTCACATACAAGCGGTTCTCGTTAGTCACCTCCAGCCGTCATACGCCCTTTCGCTTCGTAGCAGAACTCCATATTTTGCCCCATTTTTTCGCCCACTATTCTATTGGTATCCATCGGAATATCAATTCAAGCATTTCTCTCCCACTTTTCCATACATTTATTCGGAACGCTAGAAATTATTATTCTCAATTGACCATCCTTATGGAACCACAAGTCATGGCCCTTAAATTTCGTAATTTCAGTTAG

Protein sequence

MRSFAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQVMALKFRNFS
Homology
BLAST of ClCG06G004100 vs. NCBI nr
Match: XP_008458264.1 (PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 8   LENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIG 67
           L NF PL DAA LF NI  EADVKV+  + S++T+ R     FVA LHI   FF  Y   
Sbjct: 9   LHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSR--WFVAVLHIWEPFFNDYY-- 68

Query: 68  IHRNINSSISLPLFHTFIRNAR-NYYSQLTILMEP--QVMALKFRN 111
           I ++I S ISLP FH  +  AR ++ S + I M+     + L+F+N
Sbjct: 69  IDKDITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYLFLEFKN 110

BLAST of ClCG06G004100 vs. NCBI nr
Match: XP_023006008.1 (uncharacterized protein LOC111498886 [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 4   FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
           F  +LE+  PL DA FLF  ++ E DVK T+  FSL  S  +   RF+ +L I    FA 
Sbjct: 2   FLVKLEDVTPLSDAVFLFNQLSLEGDVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 61

Query: 64  YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
           YS  +  N    ISLP F  F+ +  +Y S   ++ E +  M L+F N
Sbjct: 62  YS--VDPNQCWRISLPTFQKFLWDGESYSSMTFLMHETRSRMVLEFHN 105

BLAST of ClCG06G004100 vs. NCBI nr
Match: XP_023006010.1 (uncharacterized protein LOC111498887 [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 4  FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
          F  RL +F PL +A  L   I++EAD+K +  +FSL+TS  +   RFVA   I   FFA+
Sbjct: 2  FLVRLHHFDPLREATSLLAQISNEADLKFSSSKFSLITS--YPSRRFVATFQISHRFFAN 61

Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTI 98
          YS  + RN +S +SL  F+  + +   ++S +TI
Sbjct: 62 YS--VDRNHSSRVSLQSFYDAMYDG-IFFSSMTI 90

BLAST of ClCG06G004100 vs. NCBI nr
Match: KAG6575164.1 (hypothetical protein SDJN03_25803, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 4   FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
           F  +LE+  PL DA FLF  ++ EADVK T+  FSL  S  +   RF+ +L I    FA 
Sbjct: 2   FLVKLEDVTPLSDAVFLFNQLSLEADVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 61

Query: 64  YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
           YS  +  N    ISL  F   + +  +Y S   ++ E +  M L+F N
Sbjct: 62  YS--VDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHN 105

BLAST of ClCG06G004100 vs. NCBI nr
Match: XP_022958858.1 (uncharacterized protein LOC111460013 [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 4   FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
           F  +LE+  PL DA FLF  ++ EADVK T+  FSL  S  +   RF+ +L I    FA 
Sbjct: 17  FLVKLEDVTPLSDAVFLFNQLSLEADVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 76

Query: 64  YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
           YS  +  N    ISL  F   + +  +Y S   ++ E +  M L+F N
Sbjct: 77  YS--VDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHN 120

BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match: A0A1S3C7K5 (uncharacterized protein LOC103497732 OS=Cucumis melo OX=3656 GN=LOC103497732 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.7e-08
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 8   LENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAHYSIG 67
           L NF PL DAA LF NI  EADVKV+  + S++T+ R     FVA LHI   FF  Y   
Sbjct: 9   LHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSR--WFVAVLHIWEPFFNDYY-- 68

Query: 68  IHRNINSSISLPLFHTFIRNAR-NYYSQLTILMEP--QVMALKFRN 111
           I ++I S ISLP FH  +  AR ++ S + I M+     + L+F+N
Sbjct: 69  IDKDITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHNYLFLEFKN 110

BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match: A0A0A0KB79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002360 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0

Query: 8  LENFGPLEDAAFLFRNIADEADVKVTYKRFSLV-TSSRHTPFRFVAELHILPHFFAHYSI 67
          ++NF PL DAA L  NIA EADV+++  +FS++ T   H    FVA LHI   FFA+Y I
Sbjct: 11 IDNFSPLADAAALLTNIAHEADVEISRTQFSIIATGYSHW---FVASLHIWEPFFANYYI 70

Query: 68 GIHRNINSSISLPLFHTFIRNARN 91
               I S ISLP  H  +  ARN
Sbjct: 71 D-EDPITSRISLPALHHSLNRARN 90

BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match: A0A6J1L3R4 (uncharacterized protein LOC111498886 OS=Cucurbita maxima OX=3661 GN=LOC111498886 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.3e-06
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 4   FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
           F  +LE+  PL DA FLF  ++ E DVK T+  FSL  S  +   RF+ +L I    FA 
Sbjct: 2   FLVKLEDVTPLSDAVFLFNQLSLEGDVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 61

Query: 64  YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
           YS  +  N    ISLP F  F+ +  +Y S   ++ E +  M L+F N
Sbjct: 62  YS--VDPNQCWRISLPTFQKFLWDGESYSSMTFLMHETRSRMVLEFHN 105

BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match: A0A6J1KZ05 (uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 4  FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
          F  RL +F PL +A  L   I++EAD+K +  +FSL+TS  +   RFVA   I   FFA+
Sbjct: 2  FLVRLHHFDPLREATSLLAQISNEADLKFSSSKFSLITS--YPSRRFVATFQISHRFFAN 61

Query: 64 YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTI 98
          YS  + RN +S +SL  F+  + +   ++S +TI
Sbjct: 62 YS--VDRNHSSRVSLQSFYDAMYDG-IFFSSMTI 90

BLAST of ClCG06G004100 vs. ExPASy TrEMBL
Match: A0A6J1H490 (uncharacterized protein LOC111460013 OS=Cucurbita moschata OX=3662 GN=LOC111460013 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 4   FAGRLENFGPLEDAAFLFRNIADEADVKVTYKRFSLVTSSRHTPFRFVAELHILPHFFAH 63
           F  +LE+  PL DA FLF  ++ EADVK T+  FSL  S  +   RF+ +L I    FA 
Sbjct: 17  FLVKLEDVTPLSDAVFLFNQLSLEADVKFTHNMFSLTVS--NASIRFIIKLDIWDELFAE 76

Query: 64  YSIGIHRNINSSISLPLFHTFIRNARNYYSQLTILMEPQV-MALKFRN 111
           YS  +  N    ISL  F   + +  +Y S   ++ E +  M L+F N
Sbjct: 77  YS--VDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHN 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008458264.11.2e-0744.34PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo][more]
XP_023006008.11.1e-0537.96uncharacterized protein LOC111498886 [Cucurbita maxima][more]
XP_023006010.12.7e-0439.36uncharacterized protein LOC111498887 [Cucurbita maxima][more]
KAG6575164.14.6e-0437.04hypothetical protein SDJN03_25803, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022958858.14.6e-0437.04uncharacterized protein LOC111460013 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C7K55.7e-0844.34uncharacterized protein LOC103497732 OS=Cucumis melo OX=3656 GN=LOC103497732 PE=... [more]
A0A0A0KB791.1e-0647.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002360 PE=4 SV=1[more]
A0A6J1L3R45.3e-0637.96uncharacterized protein LOC111498886 OS=Cucurbita maxima OX=3661 GN=LOC111498886... [more]
A0A6J1KZ051.3e-0439.36uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887... [more]
A0A6J1H4902.2e-0437.04uncharacterized protein LOC111460013 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G004100.1ClCG06G004100.1mRNA