ClCG06G002610 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G002610
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RNA-binding KH domain-containing protein
Location	CG_Chr06: 2999079 .. 3008976 (-)
RNA-Seq Expression	ClCG06G002610
Synteny	ClCG06G002610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGTACATACATACTGCTAAAATAGTTGTATATAAAAAACTAAAACTAGCCCTTTCTCTTCTAGCTCTCCTTCCCCATCGCCTTGTGTTGATTCTCTATGGTAATCATCAACTATCAACATTTCTCTTCTGCATTCACGTCTTCGCACTCGCAACCTGATACAGCCATCTTCAATTCCTCACTGCCGTGAAGATTCTTCCTAATATGCAACCAGGTGATATTCCTCTATACCCTTCCATGCCCGCCATGGCTCCTCTGCCTGTTTCTATGCCCTTACCCGGGACTTTATTGGTTTCCGAGCCCGGACATACCGTCACCGGGAAACGCCGACGAGAGGACGACCCGATCGTTCCCAATTCGGAGGCCTCAGATGTATCGGCTCCCAAAAGACAAGCGAAGGCCCATGACGTGCTTTTCAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATTGGTAAAGTTGGTTGCCGAATCCAGAAGGTTCGTGAGGAGACCAAAGCTACAATTAAGATTGCGGATGCAGTCGCGGTATGGTTCTTGTAATTTGATTTTGAGTGCTTGGGGTTAGGGTTTTCGTTTTGCTTTTCTTCTTTCCTACTCTTTTGCCTTTGTTTGGCTATGGAGGAAGTACTTAAAGCAAACTTCATGTTTTTCACTATGTTTAACTTTAGCCGCGGTTTTTTTTATCCCTCTTAAATCTTTTGCTGGTTGTGTTGTATTGTATGTCAAATGGTTGTTGTATTGGTGACAATTTGAGCTTTTGTTGACGTTTCAGCGGTATGAAGAACGCGTTATCATTATAAGTTCCAAGGACAATGAGAATTCGATTACTGATGCGGAGAAAGCACTTCAGCAAATTGCAGCACTGATATTGAAGGTCATACATCGCTAACTGCTAGACTGTGCTTTAGAGATGTTATATTTATTTCCTTGCGTGTTGTTGAGTTTCAAGAGTTTTTTTTGTTTATGTTGTGGAAAGGCTAATTTTTAAAAAAAAATCAAGTTATTTGTGGTTTCTGTAGGAATGTTAAACACTATGGACATTCTCCAAAGATCTTCATCAATGGTTTTGGATTTTCCTAGTACGGTATTGCATATTGTGCAGGGAAGCTACAAAGAATTTGAACTCCAAAAAAAAAAAAAAGGAACCAGAAGAGAAAGTGACAAAGAATTTAAACCAATGTCAGTCTATCATGAAACTTTGAAGCAGATTTTGGGACATGTTTGGGGTCAATTTAGCCACAGTCAGAGTGATGTAGTTAGTGCTAGAACTTCTTTAGGTTTTAATTGTTTTGGTTTTTTTTCTAAAAATATGTTGTTAATTCTCTATAAGTTGATGCTGTCAGCTTTGTGTTTACACATATTCATAATCAAATTTCATTTATTGAGTGACATATCTATTTAAGAGCTTTTGGCTACATCACAGTGGTTGTGAGGGTGAGGATATGTTGGAGGAGGTGCTTGTTAATAGTTCTGCTTAGGGAGTTAGGTTCTTTGGCAATTGCTTTTCTTCTTTATGCTATTTTATGGAATTTGTGCCTTGGAAATAGGACATTCTTATGGATACATAGAAGTATTGGAGGAGGTTTGGAGTGTGACAAATTTAAATGCCTCTCTTTTGGAATTTTTGTTTTAAAGAGTTCTGCAATATGCGCTATTTTTTGTTCTCAACAATTAGAGCAATCTCCTGTTATTTTGCTTTATGTTCTGTTTTTGTTCTCTGTTGTTCGGATGTTCTTTTCTGTAGGTTGTTCCTTTTAATAGAAGTTACATTTATATATATATAGATAGATGACTTATCCACAATGGTTGAAAGCTTCTTCATGAATGTTTCTTTGCTATATTGACGTGTATAATGAGGAAGTAATGATGGAGGTAACTGATGTTAATGACTTCAATCAATGGCCGGCAACTCTAGTCCTTTGACTGTCTTAAAAATTTTGTTCTTTTTCCATATCAAGAAGTTAAATATCTAGATGAAAATAAAAAGACAACACTTGAAGTTATTGATTTTCAAGGCAGGGTAACTAACAGCACTTTCATCATGTGATTGGTTCTTTTTTATTTTTTATGAGTAACAATGTGGAATTGAGCTAGCTTACACTTACATGCCCCTTGACAATTAAACTACCCCTCTGATGTGAACTTGTAGTATATTTGATAACTTAGCTTGGCAGCCATCATTGTTTTAGCCTACAAGTGTCGATTGCTATCCTTTTTCCTAAATAATCTGTCCATGCTTGATCAATTAAATTAGTCCTCATCTTGAAGTGCAAATGTCTGCGTAGTAAAATAGAATGATAACTTCTGATATTTATTTAGATCACTTTTGAGAATTTTGTATCCGCTACTTCTTTTATTTATTTTTATTTTGTAATTATACTTATGGTATTTTTACAGGAAGATGGTACGAGCATTGAGGAACTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTTATAGCAGGATCTCAAGCAGGTTCCTTGATTGGTGCCTCAGGTCAAAATATTGAGAAATTGAGGAATTCTTCTGGTGCATCAATTACGATTCTTGCCCCAAATCAATTACCTCTTTGTGCATCTGCTCATGAATCTGACCGAGTGGTGCAAGTGAGTTTTTCCACTCTGTCAGAATTTAGAACATACATAGTGTTTATCATTCTTTTTTTATGAGAAACAAGTATTATAGTGTATCATTCTTTCATCCTTCCTATTAATTTCATCCCTATTTGTTTGTATCATAATGATATGACCAATGTTACAGCTATGCTTGATGCAAATTCATTTAAATATTGAGCAAGATGTTATAGTAGTTGCCCATTGCAAGTAATAAGGTGAAAACGAGTTTTTGTTCTACTTTTCTAACGTTTTCTAAATGTTCATTGACTGAAAAAATTGACTTCCATGAGTAGAGTGCAGCTAACTAGTATTGGCTGATTCTTGATATGAATGTTGACCACCCAATACATATCCCTACTTTTGTAGTTTCATAATGTTTGGTTTGGGCTAATAATTTGTTATGATCGCAACCATTAGTCGGTGATTCTAATGTCATCTAAAGGCTAGCTAAAAAATCCTTTGGGGTTAGCAAAGTTATCTTTTAGCTACGTCAATCTCACTCATCATCAGTATTTTCATCCTCAAGAGTAGTTGGTCTCTACCAGACTGGAAAATGATTGTATTAAGAGTTCCTTGTGAGAAGGTAGAGGCATCACCTTTTGCACCTCACCTTGGGGTTTCACCCCCTTCTTGCTAATAGGGAGTCGATGGAGGCTACCTCTTTGTGTTCTACTTTGGAGTTGTTCAGTACCCTGGATCTTGGTTTTTATCACCTTCTCCTTATCCTTCTCCAGGCTTCTCTTCCGATTTTCTTTTCTTATGAGGACTCTTTCGCTTCTCAATCATCCCTTCATTTTATTCACTCTGGAAGACTAAGTTCTCCATAAAGGTTAAGTTCTTTGCTTGGCAACTCTTGCATGGAAGAGTAAACACTTTAGACCGTGTGCTAATACTCGCTTCTTTTTGGGACTGTAGTGGTGCTCCCATCATTAAGGTGTGTTAGAGAATCTTGGCCATATCCTTTGGGGTTGCAATTATGCTTAATCGATAAGTTCCAGATTTCAGAATGCTTTTGGAATCTCATTGGCTTGGAGCACTAGGGATTGTAGGGATTGGATGGAGAAGGTTTTGTCATCCCACCCTCTTAGGGAGAAGGATACTTTTCTTTGGCATGCGTGCTTCTGTCATTCTTTAGGGGCTTTGGACCATGTTTTCAAAATCGTTTGAGGCATAAGCCTTGAGGTGAGGTGGCCTTGCGATGCCTCAAGGCTTAGGCTTGTGCAAGGTAAAAGGAGGCTCACACCTTATTGATAGAGGCTTGAGCCTTTGTGAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCGACTTTAGAATATTCACACCTGGTGAATTTTGTAATGCACAGATTTATAGATCAATGAAATTCATCTTAATGGATTGTATGCACCATTGTTTTCAGCCATTTCTGATTCTTCTTTGCTGTGTGTCTCTATTGCTCCTTCCCAGTTTGATTTGTATGTTATCATATAATGAGAGGGAAGTTGTTGATATCTTTTGTAGTCATACACCTGGATAATATTTCTTAAACAATTCATTCTACAAGTTCTTGTTTCTTGTGGGATTGTGTAATATGACTCTGTAATCTATACCAGACTATTACTATCTACAGATTTTAGTGCGCTTTCTTTGTGAGAAATTGGAGTTCCAAGAGGGGTTTGTTTGTTTGAGAAGCAGTTTCATTTTGGAATTTAAGATTGGCATTAGAAGATAAGTTACACTGTTTCTTTCAAGATTGCAATAGTCCACTGCTGCTTTCTCCGATTCTGCTTTGGGAATGAAGACCTTGTGAAGTAGTTAGGGAATGGAAGGTTGCAAGAATTTTCTGCCAGTCTTATTCTTCAAGATACAGTTCTCTTTAATGATCTGAAATTTTACATGCCAGGAACTTTTTTTTTATTTCAAGTTGCTCAATCATTCTTAAATGTTCACTTCACATAATGTTTATCAAATCATCTATCAAACTTTTGCAAATGTTTGAAATTGTCATGATCATTTTCACATTGCTAGGCTACTTTTCTTCATGTCTTGTTATCACATGGTGTCCCATCTAATCTCATTTTTTGAGATGTCTAAGATTATGTTATAAGAGCTGGCATTAATGATTGGTTATGTTTCGTTTGGAACTCAGATATCAGGGGATATTCCGGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGTCCAAAATTGAACAAAGTCTTGAGAGTTTATCTGATTCATGCACACTATGAAACTTTTGCTTAAACTTTGTGGAGTACAAGATAATTGCAGCAGATGTTTCTTGAGATCAGTCAAATCATTTTTCTTTCTATTTTTTTAGTGATTTTTGGGTTGAATTCAATTTCAGGGTAAATCCACCTCGGCAAGTCATTTCCGTTAGCCCAACATATAATTATAATACAATGCACCCGCCACAGTCATATATGGATCCAACCTCAGGTTATTCAGTGGTTTTCTGTATCAAATAAATCATTTCTGATTCCGTCTTTTGTGTGTCTGTGAAGTTTTAATATTTTTTCTTCTAACCACATCATCTTTAGGAAAACCAATCTTGCAGTTAATTATGTAACATTCGAGATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATCGGGATTGGTGGTTTCAACATATCAAGAATCAGAAATGAATCAGGGGCTACTATCAAGGTCAGAAAACCAAGCAGTTTTATTTCACTATGAAAGATCCTGAACCTCCATTCCTAAATCAATATCCTTACATTATTCTTTACAGGTTTGTGGTGGCCGAGGTGAACAAAATTACAGGCAAATACAATTTGGTGGAAGTGCTGAACAGGCATGAATGTTTCTCTTATTTTTAAGTTTCATGAACTAGCCCTAATTGGTAAATATGCAAATAAAAATTTGAGTTTCGATAACGATGTATATTACAAGCAAAACTGTTTGGGTTTTATTTCTCTGCTTTTGTAAAAATAATAATAATAATGAGCTGGTCTGTTGAAAGATTTGAAAGCTGAAAAATAATGTTGTCAAGCACGCCTATATTTCTGCTTGGCATGCAGTAGATATGCAAGTAAAAAGAGATCATTTGAATTAGATATTTAAAGGGGAAAAAATTCTGCCTTTAAGTTGTAATGTCAAAATCATTTATGCTGAAAACATATTCCTTAAAAATTTAAGATCTAAAACTTTAGTTTCGATAACGATGTATGTATGATACTGATTACCCAAACATATTGTTTTGTGGTTGTGTGGATGTAATTGAATGAAATATGGATATAAAAAAATAATTGTAAGATTAGCACCTGATATTTCGTCGGTTTTTGTGCACCTTCATGTTTTCTTGTGTTGTGTTTGCTTATTGTTGGTTTCAAAGATTTTGACCTTGGAGTGGTTGATGAAAGATACTAATCTGATATAAGAGAAGTATAATTTACTACATATTTCAGTTGGCATTGTTAAACGTTTAGATATATTTTTTTGGATGTTTATCTTTAATGAATGAAAATAATTTGTAAGTGTGCTATTTATCTTCTTATTTGGTTACTTCCTTAAAGCAAGCAATTTTTTTTCTTTAATTAAAAAAATACTAGCATTATGTGGACGTTATTTGGGGTGTTCTTTTTCTCACATTTTATTGGTAGAGAATAATTAAATAAAAGATGTTGGACTGACTTTTGCTTCCATGGGTACTAAATAGTGATCGTTTTTATATTTTCATTAAAAAAATTCGCTAGTTATTCTTTTTGTATTTCAATGAATTATTGCATCCATAGAAACAATTGTTATATTTCATTATTATTAATTTCTGAAAGATCAAATCGAAAAAGCCTTGGTATGCCAGAAATAGAGTAGCTTCATTCAGAATATCTAGAGAATGCCTTGATTTTTTTTATTTTTAACACCTCTGCTCTCTCGCATTTTGTATTGTTTTGTGGATGGTTATCAGGTAGCATTGGCAAAGCAAAGGGTTGATGAATATATTTATTCTCAGGTGATACGACAAGCTGGTGTTCAACAGACAGCGTAGGTTTTCCTTCATAACTATACATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCATGCGGGGAAAAAAAAAAAAAAAAACTTTCCTGTGGTGAAGCCATTGTCCAAGTTCTAGGATCTTGTCCCAAAAAAGGGAAAAAAATCAGAAATTTCATCAAAACCATACTATCATGGTGGTGGTAACATAAAATTCAAAACTTTTAGTTGTACTCGGTAATACTCAACTTAGAGACAAGGAATAACCAATACTTAAATTTCCATCGGCACTTGAAAAGAAAAATGATGGCCTGAATGGTAAGACCGTGTCAAGTCATATAATATTTCATTATTTAGCTTTAGTCAGGACAGGTAGGGAATTTGGGATGATTTTTAACAACGGGAAAGGTGTTTTTAGTCCATACAGATTCACACACATATTTTAGTGACTAAGATAAAATACATTTTTTAAACCCTAAATTTTCTAGTCAGATGTTTTGAAAATTCTAAAAACACTAGAAAAGAAAAAAAGGAAGAAATTGTCCCAATCTCTAGTCTGAACGAGAGAGCAACATATAATTGTGGTAGCATGATTTCACATCTTGTGGTAGTATAATCTCCAGTCTGATCCCTCTTGTATTTTGTTGTATTGCATTAACCTCTTTTCATTTCATCAATGAAAAGTTTTGTTTCAAAAAAATAATAAGAAGAAGAAAAGAAAAAGATTTCACATGTTGAGTAGATGGTAGATACTCTGTTTTATAGTTTAGACTATCAAACTCTTTACGAACGTGAGAACTCTGCTTCCTGTTGCGGCTATCCTTAGATCGTATATGGTTCCATCTGCTCAATTCTATTTAACTTTTCTAACACATTCAATGGATGAAATTTGTATTCTTTTTACCTTTGGGGGTTCATGAGTGAGTTCCACCCATTCAACTATGAAAGTTACACAAATTGAATGAGAAATTGTCTTGGTTAAAATTGCAATTTTAGTCCCCATTCTTGTGCTTACCAATTTGATTCCCATAGTTTTAAATCTTTCAATTTGATACCAATGATTTAGTTCAGTATGCTTTTAGCCCATAACCACTCTTAGTCCTATCCAAAGAAAGCACATGATTAAATTGAAAGATCAAGAAACCTTAGAACTAAATTGAAGTTCCAAACAACATAGACTAAAAATGACAAAATATGTAAGCAAGAAGATTATTTTGTTCTTTTGGTAACAAAAAAAGAGATTCCTGCTTTGTTTCAGCTCATTAAATACAATGTTCTTCAGTCTGCAGATGTGGTAAATCTCAAACAGAAAGAGTTGTTAGTTGTAATGGCAAACATCTCAATGGGAAGCTCTGAAGGACAGCTCCTACAAACTTCAATCTGATGAATGGATGGATATGATGAATAGTACAGTTAATGAAGTGCTGCAGGATTTTGGAATAATGGCTTCCTTTTTTTTTATTTTAATTTTTTTTTAAATGTGACATATTGTAATTGTGGCACATAGTTGTCTGAATATTTTCTATATTAACTACTTAAGAGTTTCTACATAGCTATTAAAGGCTGCTAGGAAAAGTTTGGCTTTGAGCTCTTAGTCTTGAATTTAACTTTGATTTCTAATTTCGCCAATATCTTATTGCTTTTGAGTATCATCATTCAACATATAAGTTCATGCGGGGATAAGTTATTTCTCTATAGCCATACAAGTTGGTGAAGCTAAATTTATTGAACAATTTTGTTGAGATGAGTCTTAAAAAGTTTGGGGAAAATAATCATTTTATTTGTTGATTTTAACTTTATTGAAGTGAAGCTGAAATTCTAGGCTCCGTTTGAAACCTTTTTTAGTGCTCTAAGTATCAATGTTTTAAGCAATTTCTGTATTCACAAAGCACAACAATGCAATATTTGAAGCAATTTCTTTAAGGGAGAGCTTGAAAACTCATCGTCCAAGTCTTCAATGCTTTGAATCATCGTTTATTTCATGATTTAAATGCTTTAAATCTTTCTTTTGGGTTTAAGTTACCTTAAAAATACTTAAAGCTAAATTATAACAAATATCTTTGAATTTTGTCCTTTGTTTTAACAATATCCCTATGCTTTCCAACAAAAATTGAGACTTCAGATTGTGAAACGATGACCTAATATTAGGATTGTAATCCTTGAGCATTGGTATGGTTGACATGTGATCCTTGCGACAGCGAATACCATGGGTGTTCATGGTAGCACATGGGTGAAGATCGAAGCAGGTAGCACAGGCAACGTGCAACACTAGTAATTGACTCAAAAGTTTAAGCTGATGGGTGGATGTAAATTTAATATTATATTATCTAAAACTCCCTTCACTTTTGGGCTTGAAATATGTGGAAGATCCAATAAGTGAAAATCAATATTAACTGAGGAGGAAATAATATTGGAGGGGTTTGATAAACAGTACCTCTTGGACCACCTACTTTGATCCCATGTTAAATCATTAATTGACCCAAAAGTAGAGGTGTACACGAGTTGGGTTGGGGAAATTTTTTGGACCAACCCGAATTTTCAGGTTGGTCTAGTTGGCTACCCGAAGAACCCCAATAGGGTACTTAACCCAACCCTTGAAATTGGGTTGGGTTGGGTTGTTGGGTTGGAGTTTCTTTTTTCTCTCTCTCTCTCTTTTCTTTTCTCCTTAGATCTGAGGGACTGAGGAGGTCACGAGAGGAGAGGGAAAAGAAAGGGAGAGGCAGAGTCGGACTGTCGAAGAGCAAGAGGAGAGGGAGAGGCGGAGGTCGGAGACCGAGAGGAGACTGGAGAAGGAGAATCATATGGGACTGTCGGAGGACAGAGAGCGAGAGGAGGGGAGAGGTAGAGACCGAGATGAGAGGGAGAGTCGGAGTCGGACTGTTGTCGATGTCTGTCTAAGAGGACTGAATCTGAATTAA

mRNA sequence

ATGTCGAGTACATACATACTGCTAAAATAGTTGTATATAAAAAACTAAAACTAGCCCTTTCTCTTCTAGCTCTCCTTCCCCATCGCCTTGTGTTGATTCTCTATGGTAATCATCAACTATCAACATTTCTCTTCTGCATTCACGTCTTCGCACTCGCAACCTGATACAGCCATCTTCAATTCCTCACTGCCGTGAAGATTCTTCCTAATATGCAACCAGGTGATATTCCTCTATACCCTTCCATGCCCGCCATGGCTCCTCTGCCTGTTTCTATGCCCTTACCCGGGACTTTATTGGTTTCCGAGCCCGGACATACCGTCACCGGGAAACGCCGACGAGAGGACGACCCGATCGTTCCCAATTCGGAGGCCTCAGATGTATCGGCTCCCAAAAGACAAGCGAAGGCCCATGACGTGCTTTTCAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATTGGTAAAGTTGGTTGCCGAATCCAGAAGGTTCGTGAGGAGACCAAAGCTACAATTAAGATTGCGGATGCAGTCGCGCGGTATGAAGAACGCGTTATCATTATAAGTTCCAAGGACAATGAGAATTCGATTACTGATGCGGAGAAAGCACTTCAGCAAATTGCAGCACTGATATTGAAGGAAGATGGTACGAGCATTGAGGAACTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTTATAGCAGGATCTCAAGCAGGTTCCTTGATTGGTGCCTCAGGTCAAAATATTGAGAAATTGAGGAATTCTTCTGGTGCATCAATTACGATTCTTGCCCCAAATCAATTACCTCTTTGTGCATCTGCTCATGAATCTGACCGAGTGGTGCAAATATCAGGGGATATTCCGGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGGTAAATCCACCTCGGCAAGTCATTTCCGTTAGCCCAACATATAATTATAATACAATGCACCCGCCACAGTCATATATGGATCCAACCTCAGTTAATTATGTAACATTCGAGATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATCGGGATTGGTGGTTTCAACATATCAAGAATCAGAAATGAATCAGGGGCTACTATCAAGGTAGCATTGGCAAAGCAAAGGGTTGATGAATATATTTATTCTCAGAGTCGGACTGTCGAAGAGCAAGAGGAGAGGGAGAGGCGGAGGTCGGAGACCGAGAGGAGACTGGAGAAGGAGAATCATATGGGACTGTCGGAGGACAGAGAGCGAGAGGAGGGGAGAGGTAGAGACCGAGATGAGAGGGAGAGTCGGAGTCGGACTGTTGTCGATGTCTGTCTAAGAGGACTGAATCTGAATTAA

Coding sequence (CDS)

ATGCAACCAGGTGATATTCCTCTATACCCTTCCATGCCCGCCATGGCTCCTCTGCCTGTTTCTATGCCCTTACCCGGGACTTTATTGGTTTCCGAGCCCGGACATACCGTCACCGGGAAACGCCGACGAGAGGACGACCCGATCGTTCCCAATTCGGAGGCCTCAGATGTATCGGCTCCCAAAAGACAAGCGAAGGCCCATGACGTGCTTTTCAGAATCGTTGTGCCCTCGAAGCAGATCGGGAAGGTTATTGGTAAAGTTGGTTGCCGAATCCAGAAGGTTCGTGAGGAGACCAAAGCTACAATTAAGATTGCGGATGCAGTCGCGCGGTATGAAGAACGCGTTATCATTATAAGTTCCAAGGACAATGAGAATTCGATTACTGATGCGGAGAAAGCACTTCAGCAAATTGCAGCACTGATATTGAAGGAAGATGGTACGAGCATTGAGGAACTAAAAGTTGGAACAGGGCATGTGGCTGCCAATACTATAAGGCTCCTTATAGCAGGATCTCAAGCAGGTTCCTTGATTGGTGCCTCAGGTCAAAATATTGAGAAATTGAGGAATTCTTCTGGTGCATCAATTACGATTCTTGCCCCAAATCAATTACCTCTTTGTGCATCTGCTCATGAATCTGACCGAGTGGTGCAAATATCAGGGGATATTCCGGCAGTTTTGAAGGCTCTTGAGGAGATAGGCAATCAGCTAAGGGTAAATCCACCTCGGCAAGTCATTTCCGTTAGCCCAACATATAATTATAATACAATGCACCCGCCACAGTCATATATGGATCCAACCTCAGTTAATTATGTAACATTCGAGATGTTGATATCGGAGACGTTGGTGGGTGGGTTGATCGGGATTGGTGGTTTCAACATATCAAGAATCAGAAATGAATCAGGGGCTACTATCAAGGTAGCATTGGCAAAGCAAAGGGTTGATGAATATATTTATTCTCAGAGTCGGACTGTCGAAGAGCAAGAGGAGAGGGAGAGGCGGAGGTCGGAGACCGAGAGGAGACTGGAGAAGGAGAATCATATGGGACTGTCGGAGGACAGAGAGCGAGAGGAGGGGAGAGGTAGAGACCGAGATGAGAGGGAGAGTCGGAGTCGGACTGTTGTCGATGTCTGTCTAAGAGGACTGAATCTGAATTAA

Protein sequence

MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAPKRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNPPRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNESGATIKVALAKQRVDEYIYSQSRTVEEQEERERRRSETERRLEKENHMGLSEDREREEGRGRDRDERESRSRTVVDVCLRGLNLN

Homology

[Close]

BLAST of ClCG06G002610 vs. NCBI nr
Match: XP_038875599.1 (flowering locus K homology domain-like isoform X1 [Benincasa hispida])

HSP 1 Score: 588.6 bits (1516), Expect = 4.0e-164
Identity = 315/341 (92.38%), Postives = 319/341 (93.55%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPS+P MAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP
Sbjct: 1   MQPGDIPLYPSIPPMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDN+NS+TDAEKALQQIAALILKEDGTS+EELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNDNSVTDAEKALQQIAALILKEDGTSVEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. NCBI nr
Match: KAA0039772.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucumis melo var. makuwa] >TYK24725.1 RNA-binding KH domain-containing protein PEPPER-like [Cucumis melo var. makuwa])

HSP 1 Score: 580.1 bits (1494), Expect = 1.4e-161
Identity = 314/341 (92.08%), Postives = 317/341 (92.96%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDD IV NS+ASDVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDNENS+TDAEKALQQIAALILKEDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDI AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. NCBI nr
Match: XP_008459768.1 (PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Cucumis melo])

HSP 1 Score: 580.1 bits (1494), Expect = 1.4e-161
Identity = 314/341 (92.08%), Postives = 317/341 (92.96%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDD IV NS+ASDVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDNENS+TDAEKALQQIAALILKEDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDI AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. NCBI nr
Match: XP_011656837.1 (RNA-binding KH domain-containing protein PEPPER [Cucumis sativus] >KGN46494.1 hypothetical protein Csa_005583 [Cucumis sativus])

HSP 1 Score: 579.7 bits (1493), Expect = 1.8e-161
Identity = 313/341 (91.79%), Postives = 317/341 (92.96%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDD IV NS+ASD+SAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDISAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDNENS+TDAEKALQQIAALILKEDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDI AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. NCBI nr
Match: XP_022959402.1 (flowering locus K homology domain-like [Cucurbita moschata])

HSP 1 Score: 569.3 bits (1466), Expect = 2.5e-158
Identity = 307/341 (90.03%), Postives = 313/341 (91.79%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVS+ GHTVTGKRRREDD IV NSEA DVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSDSGHTVTGKRRREDDLIVSNSEAVDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRI+VPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIIVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KD ENS+TDAEKALQ IAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDCENSVTDAEKALQHIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGA+ITILAPNQLPLCASAHESDRVVQISGD+PAVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYN MHPPQSY+DPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNAMHPPQSYIDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. ExPASy Swiss-Prot
Match: Q9SZH4 (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-16
Identity = 55/171 (32.16%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 68  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNENSI 127
           D +FR++VP  ++G +IG+ G  I+K+ EET+A IK+ D      +R+++IS K+   + 
Sbjct: 73  DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132

Query: 128 TDAEKALQQIAALILKEDG-TSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 187
                A+  +  +  +  G    ++  V       +++RLL+A +QA +LIG  G  I+ 
Sbjct: 133 --MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKS 192

Query: 188 LRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLR 238
           +  +SGAS+ IL+  + P  A+  + +R+V + G+   +LKALE I   LR
Sbjct: 193 IVENSGASVRILSEEETPFYAA--QDERIVDLQGEALKILKALEAIVGHLR 239

[Close]

BLAST of ClCG06G002610 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-15
Identity = 65/206 (31.55%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 68  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN-ENS 127
           + +FR++VP++++G +IG+ G  I+K+ EET+A IKI D      ER +++S K+  E+S
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245

Query: 128 ITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 187
           +  +   L ++   I+  DG   E  +       +   RLL+  SQAGSLIG  G  ++ 
Sbjct: 246 LPPSMDGLLRVHMRIV--DGLDGEASQAPPPSKVST--RLLVPASQAGSLIGKQGGTVKA 305

Query: 188 LRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLR-------VN 247
           ++ +S   + +L    LP+ A   + DRVV++ G+  +V +ALE I + LR       + 
Sbjct: 306 IQEASACIVRVLGSEDLPVFAL--QDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSII 365

Query: 248 PPRQVISVSPTYNYNTMHPPQSYMDP 266
           P  +     PT   + M PP     P
Sbjct: 366 PFFENQMQKPTRQMDHMPPPHQSWGP 385

[Close]

BLAST of ClCG06G002610 vs. ExPASy Swiss-Prot
Match: F4KDN0 (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-14
Identity = 56/171 (32.75%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 68  DVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDN-ENS 127
           DV+F+I+  ++  G VIG  G  ++ +  ET A I + + +   EER+I +++ +N E  
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510

Query: 128 ITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEK 187
            + A+KA+  I + + +     I    +  G  ++ T RL++  SQ G ++G  G  + +
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKI----LDNGPRSSITARLVVPTSQIGCVLGKGGVIVSE 570

Query: 188 LRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLR 238
           +R ++GA+I IL   Q P C S  E+D+VVQI+G+ P V +A+  I ++LR
Sbjct: 571 MRKTTGAAIQILKVEQNPKCIS--ENDQVVQITGEFPNVREAIFHITSRLR 615

[Close]

BLAST of ClCG06G002610 vs. ExPASy Swiss-Prot
Match: P58223 (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana OX=3702 GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-11
Identity = 60/195 (30.77%), Postives = 95/195 (48.72%), Query Frame = 0


Query: 69  VLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIII---------- 128
           V++RI+ P   +G VIGK G  I  +R  TKA IK+ D +    +RVI I          
Sbjct: 36  VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEE 95

Query: 129 --SSKDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSL 188
              +K     +  A+ AL ++   I+  D  +    K           RLL+  SQ+ SL
Sbjct: 96  IGFTKSENEPLCCAQDALLKVYDAIVASDEEN--NTKTNVDRDDNKECRLLVPFSQSSSL 155

Query: 189 IGASGQNIEKLRNSSGASITILAPN-QLPLCASAHESDRVVQISGDIPAVLKALEEIGNQ 248
           IG +G+NI+++R  + AS+ +++ +   P    A E D VV ISG+  +V +AL  +   
Sbjct: 156 IGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAI 215

Query: 249 LRVNPPRQVISVSPT 251
           +    PR+ I +  T
Sbjct: 216 MYKINPRENIPLDST 228

[Close]

BLAST of ClCG06G002610 vs. ExPASy Swiss-Prot
Match: P57722 (Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 4.0e-10
Identity = 84/343 (24.49%), Postives = 140/343 (40.82%), Query Frame = 0


Query: 47  PIVPNSEASDVS-------APKRQAKAHD------VLFRIVVPSKQIGKVIGKVGCRIQK 106
           PI+P+S    +S         K ++K  +      +  R+++  K++G +IGK G  ++K
Sbjct: 11  PILPHSTLGTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKK 70

Query: 107 VREETKATIKIADAVARYEERVIIISSKDNENSITDAEKALQQIAALILKEDGTSIEELK 166
           +REE+ A I I++      ER++ I+        TDA      + A   +ED  +     
Sbjct: 71  MREESGARINISE--GNCPERIVTITGP------TDAIFKAFAMIAYKFEEDIINSMSNS 130

Query: 167 VGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESD 226
             T      T+RL++  SQ GSLIG  G  I+++R S+GA + + A + LP     + ++
Sbjct: 131 PATSKPPV-TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP-----NSTE 190

Query: 227 RVVQISGDIPAVLKALEEIGNQLRVNPPR------------------------------- 286
           R V ISG   A+++ +++I   +  +PP+                               
Sbjct: 191 RAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAI 250

Query: 287 ----QVISVSPTYNYNTMHPPQSYMDP--------------------------TSVNYVT 316
               Q+  +       T  PP    +P                           S    T
Sbjct: 251 PHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAST 310

[Close]

BLAST of ClCG06G002610 vs. ExPASy TrEMBL
Match: A0A5A7T8H9 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002850 PE=4 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 6.8e-162
Identity = 314/341 (92.08%), Postives = 317/341 (92.96%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDD IV NS+ASDVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDNENS+TDAEKALQQIAALILKEDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDI AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. ExPASy TrEMBL
Match: A0A1S3CB11 (RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=LOC103498803 PE=4 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 6.8e-162
Identity = 314/341 (92.08%), Postives = 317/341 (92.96%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDD IV NS+ASDVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDNENS+TDAEKALQQIAALILKEDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDI AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. ExPASy TrEMBL
Match: A0A0A0KCF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103530 PE=4 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 8.9e-162
Identity = 313/341 (91.79%), Postives = 317/341 (92.96%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDD IV NS+ASD+SAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDLIVSNSDASDISAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KDNENS+TDAEKALQQIAALILKEDG+SIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDNENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDI AVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. ExPASy TrEMBL
Match: A0A6J1H4F3 (flowering locus K homology domain-like OS=Cucurbita moschata OX=3662 GN=LOC111460387 PE=4 SV=1)

HSP 1 Score: 569.3 bits (1466), Expect = 1.2e-158
Identity = 307/341 (90.03%), Postives = 313/341 (91.79%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVS+ GHTVTGKRRREDD IV NSEA DVSAP
Sbjct: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSDSGHTVTGKRRREDDLIVSNSEAVDVSAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRI+VPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIIVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KD ENS+TDAEKALQ IAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDCENSVTDAEKALQHIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGA+ITILAPNQLPLCASAHESDRVVQISGD+PAVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGATITILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYN MHPPQSY+DPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNAMHPPQSYIDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQIQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. ExPASy TrEMBL
Match: A0A6J1KTT5 (poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498149 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 6.0e-158
Identity = 304/341 (89.15%), Postives = 312/341 (91.50%), Query Frame = 0


Query: 1   MQPGDIPLYPSMPAMAPLPVSMPLPGTLLVSEPGHTVTGKRRREDDPIVPNSEASDVSAP 60
           MQ GDIP+YPSMPA APLPVSMPLPGT+LVS+PGH VTGKRRREDDPIVP SEA DV AP
Sbjct: 1   MQSGDIPVYPSMPAKAPLPVSMPLPGTVLVSKPGHAVTGKRRREDDPIVPYSEAVDVLAP 60

Query: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120
           KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS
Sbjct: 61  KRQAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISS 120

Query: 121 KDNENSITDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180
           KD EN++TDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS
Sbjct: 121 KDKENTVTDAEKALQQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGAS 180

Query: 181 GQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNP 240
           GQNIEKLRNSSGAS+TILAPNQLPLCASAHESDRVVQISGD+PAVLKALEEIGNQLRVNP
Sbjct: 181 GQNIEKLRNSSGASVTILAPNQLPLCASAHESDRVVQISGDVPAVLKALEEIGNQLRVNP 240

Query: 241 PRQVISVSPTYNYNTMHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300
           PRQVISVSPTYNYN +HPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES
Sbjct: 241 PRQVISVSPTYNYNAVHPPQSYMDPTSVNYVTFEMLISETLVGGLIGIGGFNISRIRNES 300

Query: 301 GATIK---------------------VALAKQRVDEYIYSQ 321
           GATIK                     VALAKQRVDEYIYSQ
Sbjct: 301 GATIKVCGGRGEQNYRQLQFGGSAEQVALAKQRVDEYIYSQ 341

[Close]

BLAST of ClCG06G002610 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-22
Identity = 97/326 (29.75%), Postives = 157/326 (48.16%), Query Frame = 0


Query: 33  PGHTVTGKRRREDDPIVPNSEASDVSAPKRQAKA----------HDVLFRIVVPSKQIGK 92
           P H  + ++R       P S+  D    KR+ +            D +FR + P K+IG 
Sbjct: 9   PDHRDSHRKRSR-----PQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGS 68

Query: 93  VIGKVGCRIQKVREETKATIKIADAVARYEERVI-IISSKDNENSITDAEK-------AL 152
           VIG+ G  ++++R +T++ I+I +A+   +ERVI I S  D  N+  D EK       AL
Sbjct: 69  VIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDAL 128

Query: 153 QQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGAS 212
            +I   ++ +D  S E+   G   V   T +LL+   Q G ++G  GQ ++ +R+ +GA 
Sbjct: 129 FRIHDRVVADDARS-EDSPEGEKQV---TAKLLVPSDQIGCILGRGGQIVQNIRSETGAQ 188

Query: 213 ITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNPPR--QVISVSPTYN 272
           I I+    +PLCA    SD ++QISG++  V KAL +I ++L  NP R   ++S S  Y 
Sbjct: 189 IRIVKDRNMPLCAL--NSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYP 248

Query: 273 YNTM-------------------------------HPPQSYMDPTSVNYVTFEMLISET- 307
             ++                                PP++  DP +  +  F  L+S   
Sbjct: 249 AGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPPATEF--FIRLVSPVE 308

[Close]

BLAST of ClCG06G002610 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-22
Identity = 97/326 (29.75%), Postives = 157/326 (48.16%), Query Frame = 0


Query: 33  PGHTVTGKRRREDDPIVPNSEASDVSAPKRQAKA----------HDVLFRIVVPSKQIGK 92
           P H  + ++R       P S+  D    KR+ +            D +FR + P K+IG 
Sbjct: 9   PDHRDSHRKRSR-----PQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGS 68

Query: 93  VIGKVGCRIQKVREETKATIKIADAVARYEERVI-IISSKDNENSITDAEK-------AL 152
           VIG+ G  ++++R +T++ I+I +A+   +ERVI I S  D  N+  D EK       AL
Sbjct: 69  VIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDAL 128

Query: 153 QQIAALILKEDGTSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASGQNIEKLRNSSGAS 212
            +I   ++ +D  S E+   G   V   T +LL+   Q G ++G  GQ ++ +R+ +GA 
Sbjct: 129 FRIHDRVVADDARS-EDSPEGEKQV---TAKLLVPSDQIGCILGRGGQIVQNIRSETGAQ 188

Query: 213 ITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGNQLRVNPPR--QVISVSPTYN 272
           I I+    +PLCA    SD ++QISG++  V KAL +I ++L  NP R   ++S S  Y 
Sbjct: 189 IRIVKDRNMPLCAL--NSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYP 248

Query: 273 YNTM-------------------------------HPPQSYMDPTSVNYVTFEMLISET- 307
             ++                                PP++  DP +  +  F  L+S   
Sbjct: 249 AGSLMSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRN--DPPATEF--FIRLVSPVE 308

[Close]

BLAST of ClCG06G002610 vs. TAIR 10
Match: AT1G14170.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-20
Identity = 83/280 (29.64%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 67  HDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNE-- 126
           HD ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E  
Sbjct: 9   HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68

Query: 127 ------NSITDAEKALQQIAALIL----KEDGTSIEELKVGTGHVAANTIRLLIAGSQAG 186
                   +  A  AL ++  +++    ++DGT  +      G     T+R+L+   Q G
Sbjct: 69  HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQIG 128

Query: 187 SLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIGN 246
            +IG  GQ I+ LRN + A I ++  + LP CA     D ++ I G+   V +AL ++ +
Sbjct: 129 CVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVAS 188

Query: 247 QLRVNPPR-QVISVSPTYNYNTMHPPQSYMDPTSV-----NYVTFE-----------MLI 306
            L  NP R Q + +S   + ++MH P + +   ++     NY                + 
Sbjct: 189 LLHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFIC 248

Query: 307 SETLVGGLIGIGGFNISRIRNESGATIKVALAKQRVDEYI 318
               VGG+IG GG  I++IR E+GATI+V  ++   D+ I
Sbjct: 249 PAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCI 282

[Close]

BLAST of ClCG06G002610 vs. TAIR 10
Match: AT1G14170.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 95.9 bits (237), Expect = 7.5e-20
Identity = 82/281 (29.18%), Postives = 142/281 (50.53%), Query Frame = 0


Query: 66  AHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNE- 125
           + D ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E 
Sbjct: 16  SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 75

Query: 126 -------NSITDAEKALQQIAALIL----KEDGTSIEELKVGTGHVAANTIRLLIAGSQA 185
                    +  A  AL ++  +++    ++DGT  +      G     T+R+L+   Q 
Sbjct: 76  NHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQI 135

Query: 186 GSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIG 245
           G +IG  GQ I+ LRN + A I ++  + LP CA     D ++ I G+   V +AL ++ 
Sbjct: 136 GCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVA 195

Query: 246 NQLRVNPPR-QVISVSPTYNYNTMHPPQSYMDPTSV-----NYVTFE-----------ML 305
           + L  NP R Q + +S   + ++MH P + +   ++     NY                +
Sbjct: 196 SLLHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFI 255

Query: 306 ISETLVGGLIGIGGFNISRIRNESGATIKVALAKQRVDEYI 318
                VGG+IG GG  I++IR E+GATI+V  ++   D+ I
Sbjct: 256 CPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCI 290

[Close]

BLAST of ClCG06G002610 vs. TAIR 10
Match: AT1G14170.3 (RNA-binding KH domain-containing protein )

HSP 1 Score: 95.9 bits (237), Expect = 7.5e-20
Identity = 82/281 (29.18%), Postives = 142/281 (50.53%), Query Frame = 0


Query: 66  AHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKDNE- 125
           + D ++R + P K+ G +IGK G   +++R ETK+ ++I +A+   EERV+ + S + E 
Sbjct: 41  SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEEL 100

Query: 126 -------NSITDAEKALQQIAALIL----KEDGTSIEELKVGTGHVAANTIRLLIAGSQA 185
                    +  A  AL ++  +++    ++DGT  +      G     T+R+L+   Q 
Sbjct: 101 NHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDN---DLGEKQTVTVRMLVPSDQI 160

Query: 186 GSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDIPAVLKALEEIG 245
           G +IG  GQ I+ LRN + A I ++  + LP CA     D ++ I G+   V +AL ++ 
Sbjct: 161 GCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVA 220

Query: 246 NQLRVNPPR-QVISVSPTYNYNTMHPPQSYMDPTSV-----NYVTFE-----------ML 305
           + L  NP R Q + +S   + ++MH P + +   ++     NY                +
Sbjct: 221 SLLHDNPSRFQHLLLSS--SSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFI 280

Query: 306 ISETLVGGLIGIGGFNISRIRNESGATIKVALAKQRVDEYI 318
                VGG+IG GG  I++IR E+GATI+V  ++   D+ I
Sbjct: 281 CPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCI 315

The following BLAST results are available for this feature:

BLAST of ClCG06G002610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875599.1	4.0e-164	92.38	flowering locus K homology domain-like isoform X1 [Benincasa hispida]	[more]
KAA0039772.1	1.4e-161	92.08	RNA-binding KH domain-containing protein PEPPER-like [Cucumis melo var. makuwa] ...	[more]
XP_008459768.1	1.4e-161	92.08	PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Cucumis melo]	[more]
XP_011656837.1	1.8e-161	91.79	RNA-binding KH domain-containing protein PEPPER [Cucumis sativus] >KGN46494.1 hy...	[more]
XP_022959402.1	2.5e-158	90.03	flowering locus K homology domain-like [Cucurbita moschata]	[more]

BLAST of ClCG06G002610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZH4	3.8e-16	32.16	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SR13	1.4e-15	31.55	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
F4KDN0	3.5e-14	32.75	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
P58223	8.1e-11	30.77	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana OX=3702 GN=At4g18...	[more]
P57722	4.0e-10	24.49	Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3	[more]

BLAST of ClCG06G002610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8H9	6.8e-162	92.08	RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo var. makuwa...	[more]
A0A1S3CB11	6.8e-162	92.08	RNA-binding KH domain-containing protein PEPPER-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KCF8	8.9e-162	91.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103530 PE=4 SV=1	[more]
A0A6J1H4F3	1.2e-158	90.03	flowering locus K homology domain-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KTT5	6.0e-158	89.15	poly(RC)-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of ClCG06G002610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15270.2	1.6e-22	29.75	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	1.6e-22	29.75	RNA-binding KH domain-containing protein	[more]
AT1G14170.2	1.2e-20	29.64	RNA-binding KH domain-containing protein	[more]
AT1G14170.1	7.5e-20	29.18	RNA-binding KH domain-containing protein	[more]
AT1G14170.3	7.5e-20	29.18	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 324..345
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..61
None	No IPR available	PANTHER	PTHR10288:SF265	POLY(RC)-BINDING PROTEIN 4-LIKE	coord: 32..323
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 32..323
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 270..306 score: 11.112166
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 68..134 score: 14.885542
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 161..232 score: 14.843616
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 71..121 e-value: 2.10731E-12 score: 59.7975
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 163..232 e-value: 2.54035E-17 score: 73.6647
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 160..237 e-value: 3.8E-9 score: 46.4 coord: 269..345 e-value: 0.019 score: 24.1 coord: 67..142 e-value: 2.3E-8 score: 43.8
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 163..232 e-value: 4.0E-12 score: 45.8 coord: 272..324 e-value: 4.5E-6 score: 26.4 coord: 72..135 e-value: 4.3E-10 score: 39.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 266..343 e-value: 3.1E-8 score: 35.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 67..145 e-value: 5.3E-14 score: 53.6
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 160..240 e-value: 4.4E-16 score: 60.4
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 67..137
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 264..307
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 156..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G002610.2	ClCG06G002610.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding