ClCG06G002300 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG06G002300
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein CURVATURE THYLAKOID 1B, chloroplastic
LocationCG_Chr06: 2533092 .. 2536232 (+)
RNA-Seq ExpressionClCG06G002300
SyntenyClCG06G002300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCTTCCTCCTCTACATTTGCTCTCTCTTCTTCCTCCACCCTTCTCGACTCCAAGGCCCCCCGACAATCCGGTCCACCATCGTCAAACGTGCCGCTCCCGACTATCCCATCACCGCCTACTCCGTCGTCGCAGATCCGCCCTTGGAAGTCCACTGCCTATTGTGAGAATAATTATGATACGCTCACATTATTTAATAAGTTGATATGATTAATTTATGTCATAGCTCTTATCAAATCACTGCGAATTTTATAAGTTTAATTTGATAGATTACGGTAAATTTAATCTTCAATCTTTTAGGCCGAAAGATTGCTCGCAATGTAATGGCCATGGCGACCGGAGAAGTGCCGGCCGAAGTGGCCACCGGAGAGCTGGCGGAGTTGCCTGAAATTATCAAAAAAGTTCAAGAAGCTGTATGTCAAAATAATAGTAATAATAATAATAATAAAATAGAATCGTAACTTTAGTTATTTTATTTTATTTTGTTAGTTTTGTTTACATTGACTTGGATTTTGTTTCTAAGTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCTGTGTCCGGTTTTGTCGCACTTTGGGCCTCCGCTGGCGTTGTCTCCGTGAGTTTTTATTTATTTATTTAATTACTTCTAACCTAAAATATCATATTGGTTTCTATACTTTGAAATTTGTTTAATTTTAGTCTCTACTGTCTCAAATGTCCAATTTTAGATCTTATACTTTTAATAAATCTTAAATTCAGTCCTTACTACTAGTTTATTGTGATTTTTCATTGCTTTTTATTTTTTATTAGCATTTTCACTGTAAATTTTGAAAATGTATTCATATATTGTGTTTCTTTCCAAATTATTATAATTATTTGATCAATTTTGATTGACTAAATTTAAAATAATTGGTCATTTGAAAGTACACAGACTAAAATTGAACAAATTTTAAAGTATAGGGACCAAAATGATATTTAAATCTTATTTTATTAATATAATATTATATATTAGAACGTTAATATAATATTAAATTTACGTGAGTTCATTAGCTTAAACTTTTGAGTTATTATACTTTGAGTTAACGAAAAATTTAATATGGTATTTAAATACCTTATATTCAAACTCTAACAATATCATTTTTTTTAATTAATATTGATTTTTGCTTTTTTGATATTATGCATAATTAACTTTAAATACTCGAGCGAAGAAAAATATTAGAATGTTTATATAAATATTAAATTTATCTTCACTTATTAATTTTGTTAGTTTATTATTGCGAAATTATCTTAAATGATAAAATTATTGAAAATATTTACTAACTAATAGCAAAATACAATTTTGTTGGTTTATTATTGAGAAATTATCTTAAATGGTAAAATTGCTGATAATAGTCTATCGCGCGGTCTAGACAGTTCAATTTTGCTATATTTATAAATACTTTGGTTCCTTTTGCTATATTTAAAATGAGTTATTTATTATTTTTATTTTTATTTTCAGGCAATTGATAGGCTTCCTCTAGTTCCGGGACTGCTTGAGCTTGTGGGCATCGGCTACACTGGGGTAAGTTTTTCCCAATGTTGAAGGAAGACAAGATTGTTAATAAGGTTAAAAGTCAGGATTTTGAACTTTTATGGAAGTAACAATTAAATTCTTACATTTTAATTTATTACAATTTAGTCCCTAGCATTTTTAGATATGTATTTAAATTATACTTTAATATGTAAACAATTAATTTCTATAATTTTAATTTTGTAGTAATTTAGTTCATGTGGTTCCAAATTTGTAAGAAAGTTCATCACAATTTTTTTATTTTTATTAGGTTTAAATACTACTTTGGTCCTTGTATTTTTTGTTTTTGGTTTATTTGTGTCCTTGTATTTTTAAAATGTTCATTTTGGTCCTTGAAAATATAGAGATGAAAATGAACATTATAAAAATATAAAGACTAAATGAACCAAAATCAAAAATACATGGACCAAAATAGTATTTAAAATTTTTTATTATTAGTGATTTAGACTTTTGTAGCTTAAAAACATTGGATCCCTAAATAGTTTATTAATCTATTATAGGTAAGAAATTCTATTAAATCTTAATCATAATTTCATGATAAAGACTAAATCATTATATATTTTAAAATATATAGATAAAATTGTTACAAAATTAAAAAATATAGAGACAAAACAAGGATTAAATTATTACTTTTTAAGTTTCATCAATAATTAGATACCTTAACCCATAGTGGTTTTTACCCAAAAACATAATAGGGTGATTTTACAAAAATGTCTTAAATGTGCATAATTGGTTTTAATATTGGCTATAATTGATTTATGTATTTTCCTTTCAATTTTGCCTCATTTTCTCTAGATCATCATTGTTCAATTTGGCTTCAATATATCTATTTGGTTTAATTTTTTCGATATATCTTTTTAGCATGTAACTAAAATTATGTGTAATATCGACTTCGAAATCATTTAGCTTCAATTATATATATGATTCCAAAAGGGTGGCTAGCTAAAATCTTTGTTTGGTAATGAAATCCTTAATTCTGCAGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTGAGAGTTCTAACATTGTTTGTATACCATGAAAATTTATTTATGGTTAAAATATCATTTTGGTCTCTTGTACTTTAAAGTTTGTTCAATTTTAATCTCTATACTTTTAAATGTCCAATTGTAGTTTTTGTATTTTCAATAAATCTTAAATTTAACCCCTATTACTAGTTTAATGTAGATTTTTTCATTACTTTTTATTTTTTTTAGTATTTTCACTATAAATTTTAAAAATATATTCACATATTGTATTTATTTGCACGAAAATTATTATGATTATTTAATCAATTTTGATAAATACTAACTTTGAGGGACTAAAATTAAGATTTACTAAAATATAGGGACTGAAATTGAAAATTCGAAAGTATAAGGACTAAAATTGAACAAATTTCAAATTACATGAATTAAAATGGTATTTTAATCTTTATTTATTTATTATATTTTGTGTTATTTACATTATTGATGGATTTTTAATTTTAATTTTTTTTCTTTTCAGGGAAGCATTGTTGCAAAAAATAAAGGAAACTTACAATGAGATATTAGGGAGCAGCTAA

mRNA sequence

ATGGCTTCTTCTTCCTCCTCTACATTTGCTCTCTCTTCTTCCTCCACCCTTCTCGACTCCAAGGCCCCCCGACAATCCGGTCCACCATCGTCAAACGTGCCGCTCCCGACTATCCCATCACCGCCTACTCCGTCGTCGCAGATCCGCCCTTGGAAGTCCACTGCCTATTGCCGAAAGATTGCTCGCAATGTAATGGCCATGGCGACCGGAGAAGTGCCGGCCGAAGTGGCCACCGGAGAGCTGGCGGAGTTGCCTGAAATTATCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCTGTGTCCGGTTTTGTCGCACTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCGGGACTGCTTGAGCTTGTGGGCATCGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTGTTGCAAAAAATAAAGGAAACTTACAATGAGATATTAGGGAGCAGCTAA

Coding sequence (CDS)

ATGGCTTCTTCTTCCTCCTCTACATTTGCTCTCTCTTCTTCCTCCACCCTTCTCGACTCCAAGGCCCCCCGACAATCCGGTCCACCATCGTCAAACGTGCCGCTCCCGACTATCCCATCACCGCCTACTCCGTCGTCGCAGATCCGCCCTTGGAAGTCCACTGCCTATTGCCGAAAGATTGCTCGCAATGTAATGGCCATGGCGACCGGAGAAGTGCCGGCCGAAGTGGCCACCGGAGAGCTGGCGGAGTTGCCTGAAATTATCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGAAGATAAGTATGCAGTAAGTTCACTTGCTGTGTCCGGTTTTGTCGCACTTTGGGCCTCCGCTGGCGTTGTCTCCGCAATTGATAGGCTTCCTCTAGTTCCGGGACTGCTTGAGCTTGTGGGCATCGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCATTGTTGCAAAAAATAAAGGAAACTTACAATGAGATATTAGGGAGCAGCTAA

Protein sequence

MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKIARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS
Homology
[Close]
BLAST of ClCG06G002300 vs. NCBI nr
Match: XP_038906765.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 317.8 bits (813), Expect = 6.0e-83
Identity = 164/175 (93.71%), Postives = 172/175 (98.29%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQS  PS+NVPLPT+PSPPTPSSQIRPWKSTAYCRK+
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSANVPLPTLPSPPTPSSQIRPWKSTAYCRKV 60

Query: 61  ARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVA GELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQK+KETY+EI+GSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]
BLAST of ClCG06G002300 vs. NCBI nr
Match: XP_008459821.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039802.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa] >TYK24695.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 8.6e-82
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 0 

Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQSG PSS VPLPT+PSPPTPS+QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVA GELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQK+KETY+EI+GSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]
BLAST of ClCG06G002300 vs. NCBI nr
Match: XP_004140528.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypothetical protein Csa_005298 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 163/175 (93.14%), Postives = 169/175 (96.57%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQS  PSS VPLPT+PSPPTP SQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVA GELAE+PEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQK+KETY+EI+GSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]
BLAST of ClCG06G002300 vs. NCBI nr
Match: XP_022992417.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 7.3e-81
Identity = 161/175 (92.00%), Postives = 170/175 (97.14%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQS  PSS VPLPT+PSPP PS+QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVAT E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQK++ETYNEI+GSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]
BLAST of ClCG06G002300 vs. NCBI nr
Match: XP_022929793.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita pepo subsp. pepo] >KAG7013838.1 Protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 309.3 bits (791), Expect = 2.1e-80
Identity = 160/175 (91.43%), Postives = 169/175 (96.57%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQS  PSS VPLPT+PSPP PS+QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVAT E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQK++ETYNE++GSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]
BLAST of ClCG06G002300 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-49
Identity = 105/177 (59.32%), Postives = 129/177 (72.88%), Query Frame = 0 

Query: 7   STFALSSSSTLLDSKAP-----RQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       S    S + LPT+P      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  ELPEI+K  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +ILGSS
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]
BLAST of ClCG06G002300 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.9e-17
Identity = 37/88 (42.05%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 86  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGW 145
           +++  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVGI ++ W
Sbjct: 68  DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 146 FAYKNLIFRPDREALLQKIKETYNEILG 174
           F Y+ L+F+PDR+ L + +K++  +ILG
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]
BLAST of ClCG06G002300 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.2e-15
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 86  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGW 145
           E+I  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GYTGW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 146 FAYKNLIFRPDREALLQKIKETYNEILGS 175
           F Y+ L+F+  R+ L + I+    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

[Close]
BLAST of ClCG06G002300 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.0e-10
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 0 

Query: 74  AEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPG 133
           A  A  E  +  E +  ++   DK    Y++        VAL+ ++ +VS+++ +PL P 
Sbjct: 93  APQAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPK 152

Query: 134 LLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGS 175
           L+E+VG+GYT WF  + L+F+ +RE L  K+ E   ++LGS
Sbjct: 153 LMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGS 190

[Close]
BLAST of ClCG06G002300 vs. ExPASy Swiss-Prot
Match: Q8YX97 (Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=valS PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 0 

Query: 107 LAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQK 164
           L ++G V L  +  V   +D +P +    E+VG+GY+ WF  +NL+  P R+  L K
Sbjct: 850 LVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFLAK 906

[Close]
BLAST of ClCG06G002300 vs. ExPASy TrEMBL
Match: A0A5A7T8Q0 (Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002480 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.2e-82
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 0 

Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQSG PSS VPLPT+PSPPTPS+QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVA GELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQK+KETY+EI+GSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]
BLAST of ClCG06G002300 vs. ExPASy TrEMBL
Match: A0A1S3CCA4 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.2e-82
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 0 

Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQSG PSS VPLPT+PSPPTPS+QIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVA GELAE+PEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQK+KETY+EI+GSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]
BLAST of ClCG06G002300 vs. ExPASy TrEMBL
Match: A0A0A0KCB7 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.1e-82
Identity = 163/175 (93.14%), Postives = 169/175 (96.57%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQS  PSS VPLPT+PSPPTP SQIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVA GELAE+PEI+KKVQEAWDKVEDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQK+KETY+EI+GSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]
BLAST of ClCG06G002300 vs. ExPASy TrEMBL
Match: A0A6J1JPR9 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488730 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.5e-81
Identity = 161/175 (92.00%), Postives = 170/175 (97.14%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQS  PSS VPLPT+PSPP PS+QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVAT E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQK++ETYNEI+GSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]
BLAST of ClCG06G002300 vs. ExPASy TrEMBL
Match: A0A6J1ET79 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436295 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80
Identity = 160/175 (91.43%), Postives = 169/175 (96.57%), Query Frame = 0 

Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQS  PSS VPLPT+PSPP PS+QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVAT E+AELPEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQK++ETYNE++GSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]
BLAST of ClCG06G002300 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 197.6 bits (501), Expect = 8.4e-51
Identity = 105/177 (59.32%), Postives = 129/177 (72.88%), Query Frame = 0 

Query: 7   STFALSSSSTLLDSKAP-----RQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       S    S + LPT+P      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  ELPEI+K  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +ILGSS
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]
BLAST of ClCG06G002300 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 197.6 bits (501), Expect = 8.4e-51
Identity = 105/177 (59.32%), Postives = 129/177 (72.88%), Query Frame = 0 

Query: 7   STFALSSSSTLLDSKAP-----RQSGPPSSNVPLPTIPSPPTPSSQIRPWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       S    S + LPT+P      S  R  K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVATGELAELPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA     E  ELPEI+K  QEAW+KV+DKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKIKETYNEILGSS 176
           AG++SAIDRLPLVPG+LELVGIGYTGWF YKNL+F+PDREAL +K+K TY +ILGSS
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]
BLAST of ClCG06G002300 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-18
Identity = 37/88 (42.05%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 86  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGW 145
           +++  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVGI ++ W
Sbjct: 68  DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 146 FAYKNLIFRPDREALLQKIKETYNEILG 174
           F Y+ L+F+PDR+ L + +K++  +ILG
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]
BLAST of ClCG06G002300 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16
Identity = 37/88 (42.05%), Postives = 61/88 (69.32%), Query Frame = 0 

Query: 86  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGW 145
           +++  +Q  WDK ED+  +  L  +G VALWAS  +++AID+LP++    ELVGI ++ W
Sbjct: 68  DVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 146 FAYKNLIFRPDREALLQKIKETYNEILG 174
           F Y+ L+F+PDR+ L + +K++  +ILG
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 154

[Close]
BLAST of ClCG06G002300 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-16
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 86  EIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAGVVSAIDRLPLVPGLLELVGIGYTGW 145
           E+I  ++E WD +E+K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GYTGW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 146 FAYKNLIFRPDREALLQKIKETYNEILGS 175
           F Y+ L+F+  R+ L + I+    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

The following BLAST results are available for this feature:
BLAST of ClCG06G002300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906765.16.0e-8393.71protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida][more]
XP_008459821.18.6e-8294.32PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039... [more]
XP_004140528.11.5e-8193.14protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypo... [more]
XP_022992417.17.3e-8192.00protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima][more]
XP_022929793.12.1e-8091.43protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749... [more]
BLAST of ClCG06G002300 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LCA11.2e-4959.32Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9M8125.9e-1742.05Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
O046167.2e-1542.70Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q8LDD37.0e-1033.66Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q8YX971.2e-0435.09Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=1... [more]
BLAST of ClCG06G002300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T8Q04.2e-8294.32Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CCA44.2e-8294.32protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0KCB77.1e-8293.14CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 S... [more]
A0A6J1JPR93.5e-8192.00protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1ET791.0e-8091.43protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of ClCG06G002300 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G46820.18.4e-5159.32photosystem I P subunit [more]
AT2G46820.28.4e-5159.32photosystem I P subunit [more]
AT1G52220.14.2e-1842.05FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G52220.21.0e-1642.05FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT4G01150.15.1e-1642.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 89..173
e-value: 3.4E-30
score: 103.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..46
NoneNo IPR availablePANTHERPTHR33222:SF9PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTICcoord: 1..175
IPR033344Protein CURVATURE THYLAKOID 1PANTHERPTHR33222FAMILY NOT NAMEDcoord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G002300.2ClCG06G002300.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid
molecular_function GO:0004812 aminoacyl-tRNA ligase activity