ClCG06G001690 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG06G001690
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	40S ribosomal protein S27
Location	CG_Chr06: 1725991 .. 1726750 (-)
RNA-Seq Expression	ClCG06G001690
Synteny	ClCG06G001690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTTATACCCTCTGCCTAATGGCAGCGCGAGTGCGTAGCCCTAGGCATTTCAAAAACTAAAGGCTGAGATTGATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCCGCTCCTATATATTCATCCTAGACGGCGCTTTTCTCCTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGGCACTTCCTTTCTGATCATCATGGTAAACTCCAAATTCCCCTACTGCATTTTGATATTCGGATCCAACTAATTTCACTTTCTTTCGCCCTATTGACAGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCTTGTAAATCCAAGCCTTTGTTTAATCTAATCTTTTTCTGGATGATGATGATCGAGCTGTTTTTTGAATTCTGAATGCAGGACGTGAAGTGTCAAGGTTGCTTTAACATGTAAGTTTTCATATTTTTTTTTCATCCAGTGTGGATATTTAGTTTTTTGAAATGAATGATGACAAAAAGTTATTTGAATGAAAAACAGAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

mRNA sequence

ATGGACGGTTATACCCTCTGCCTAATGGCAGCGCGACCGCTCCTATATATTCATCCTAGACGGCGCTTTTCTCCTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGGCACTTCCTTTCTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAAGGTTGCTTTAACATAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Coding sequence (CDS)

ATGGACGGTTATACCCTCTGCCTAATGGCAGCGCGACCGCTCCTATATATTCATCCTAGACGGCGCTTTTCTCCTCTTTCTTCACATTCATCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTCGGATTTTAGGGTTCGCGATCCAGGCACTTCCTTTCTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAAGGTTGCTTTAACATAACCACTGTGTTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

MDGYTLCLMAARPLLYIHPRRRFSPLSSHSSHRPVSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Homology

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: XP_022991567.1 (40S ribosomal protein S27-2-like [Cucurbita maxima])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 7   CLMAARPLLYIHPRRRFSPLSSHSSHRPVSLANCRSDFRVRDPGTSFLIIMVLQNDIDLL 66
           C    +PLLYIHPRRR SP+S HSS+RPVSLAN R DFRVRDP   FLIIMVLQNDIDLL
Sbjct: 14  CTGRFQPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLL 73

Query: 67  NPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTG 126
           NPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTG
Sbjct: 74  NPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTG 133

Query: 127 GRAKLTEGCSFRRKGD 143
           GRA+LTEGCSFRRKGD
Sbjct: 134 GRARLTEGCSFRRKGD 149

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: XP_022953224.1 (uncharacterized protein LOC111455834 [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 6.8e-61
Identity = 118/131 (90.08%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 12  RPLLYIHPRRRFSPLSSHSSHRPVSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAE 71
           +PLLYI PRRR +P+S HSS+RPVSLAN R DFRVRDP   FLIIMVLQNDIDLLNPPAE
Sbjct: 79  QPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAE 138

Query: 72  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKL 131
           LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+L
Sbjct: 139 LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARL 198

Query: 132 TEGCSFRRKGD 143
           TEGCSFRRKGD
Sbjct: 199 TEGCSFRRKGD 209

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: KAF5449188.1 (hypothetical protein F2P56_029664, partial [Juglans regia])

HSP 1 Score: 185.7 bits (470), Expect = 2.9e-43
Identity = 92/108 (85.19%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 35  VSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVK 94
           +S + CR   RV      FL  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVK
Sbjct: 11  LSSSLCRVSSRV----YGFLFKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVK 70

Query: 95  CQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 143
           CQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 71  CQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 114

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: EOA24972.1 (hypothetical protein CARUB_v10018269mg, partial [Capsella rubella])

HSP 1 Score: 184.9 bits (468), Expect = 4.9e-43
Identity = 90/114 (78.95%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 30  SSHRP-VSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 89
           S++ P +SLA C +   +       L  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS
Sbjct: 2   SNNNPEISLAYCVAVAAISPSSLESLTKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 61

Query: 90  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 143
           FFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 62  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKARLTEGCSFRRKGD 115

[Close]

BLAST of ClCG06G001690 vs. NCBI nr
Match: KAG6592828.1 (40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 51  TSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT 110
           +S LI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT
Sbjct: 288 SSLLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQT 347

Query: 111 VVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 143
           VVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 348 VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 379

[Close]

BLAST of ClCG06G001690 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-44
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRKGD 143
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.6e-42
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRK 141
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRKGD 143
           CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 6.2e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRK 141
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-36
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRKGD 143
           C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of ClCG06G001690 vs. ExPASy TrEMBL
Match: A0A6J1JM72 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 121/136 (88.97%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 7   CLMAARPLLYIHPRRRFSPLSSHSSHRPVSLANCRSDFRVRDPGTSFLIIMVLQNDIDLL 66
           C    +PLLYIHPRRR SP+S HSS+RPVSLAN R DFRVRDP   FLIIMVLQNDIDLL
Sbjct: 14  CTGRFQPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLL 73

Query: 67  NPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTG 126
           NPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTG
Sbjct: 74  NPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTG 133

Query: 127 GRAKLTEGCSFRRKGD 143
           GRA+LTEGCSFRRKGD
Sbjct: 134 GRARLTEGCSFRRKGD 149

[Close]

BLAST of ClCG06G001690 vs. ExPASy TrEMBL
Match: A0A6J1GP15 (40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.3e-61
Identity = 118/131 (90.08%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 12  RPLLYIHPRRRFSPLSSHSSHRPVSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAE 71
           +PLLYI PRRR +P+S HSS+RPVSLAN R DFRVRDP   FLIIMVLQNDIDLLNPPAE
Sbjct: 79  QPLLYIRPRRRSAPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAE 138

Query: 72  LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKL 131
           LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+L
Sbjct: 139 LEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARL 198

Query: 132 TEGCSFRRKGD 143
           TEGCSFRRKGD
Sbjct: 199 TEGCSFRRKGD 209

[Close]

BLAST of ClCG06G001690 vs. ExPASy TrEMBL
Match: A0A0A0K9G0 (40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.4e-57
Identity = 118/146 (80.82%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MDGYTLCLMAARPLLYIHPRRRFSPLSSHSSHRPVSLANCR----SDFRVRDPGTSFLII 60
           MDGYTLCLM   PLLYIHPRRR SPLSS SSHR   + +        F +       LII
Sbjct: 1   MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLP-LII 60

Query: 61  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 120
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 61  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 120

Query: 121 CQTVLCQPTGGRAKLTEGCSFRRKGD 143
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 121 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of ClCG06G001690 vs. ExPASy TrEMBL
Match: R0FQY1 (40S ribosomal protein S27 (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v10018269mg PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.4e-43
Identity = 90/114 (78.95%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 30  SSHRP-VSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 89
           S++ P +SLA C +   +       L  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS
Sbjct: 2   SNNNPEISLAYCVAVAAISPSSLESLTKMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNS 61

Query: 90  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 143
           FFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 62  FFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKARLTEGCSFRRKGD 115

[Close]

BLAST of ClCG06G001690 vs. ExPASy TrEMBL
Match: A0A6A2YKL0 (40S ribosomal protein S27 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111402pilonHSYRG00547 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.2e-42
Identity = 88/109 (80.73%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 34  PVSLANCRSDFRVRDPGTSFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDV 93
           P+  A    DF V    +S    MVLQND+DLLNPPAELEK+KHKLKRLVQSPNSFFMDV
Sbjct: 22  PLPPAKLSRDFEVALETSSGQAKMVLQNDVDLLNPPAELEKKKHKLKRLVQSPNSFFMDV 81

Query: 94  KCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 143
           KCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFR+KGD
Sbjct: 82  KCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 130

[Close]

BLAST of ClCG06G001690 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 180.6 bits (457), Expect = 8.6e-46
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRKGD 143
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of ClCG06G001690 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 171.0 bits (432), Expect = 6.8e-43
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRK 141
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.4e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRK 141
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of ClCG06G001690 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 151.4 bits (381), Expect = 5.6e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 57  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 116
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 117 CQTVLCQPTGGRAKLTEGCSFRRKGD 143
           CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of ClCG06G001690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991567.1	2.1e-62	88.97	40S ribosomal protein S27-2-like [Cucurbita maxima]	[more]
XP_022953224.1	6.8e-61	90.08	uncharacterized protein LOC111455834 [Cucurbita moschata]	[more]
KAF5449188.1	2.9e-43	85.19	hypothetical protein F2P56_029664, partial [Juglans regia]	[more]
EOA24972.1	4.9e-43	78.95	hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]	[more]
KAG6592828.1	1.1e-42	94.57	40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of ClCG06G001690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	1.2e-44	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
O64650	9.6e-42	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q96564	2.8e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
Q8L953	6.2e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	1.6e-36	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of ClCG06G001690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM72	1.0e-62	88.97	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111488139 PE=3 SV=1	[more]
A0A6J1GP15	3.3e-61	90.08	40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111455834 PE=3 SV=...	[more]
A0A0A0K9G0	8.4e-57	80.82	40S ribosomal protein S27 OS=Cucumis sativus OX=3659 GN=Csa_6G091290 PE=3 SV=1	[more]
R0FQY1	2.4e-43	78.95	40S ribosomal protein S27 (Fragment) OS=Capsella rubella OX=81985 GN=CARUB_v1001...	[more]
A0A6A2YKL0	1.2e-42	80.73	40S ribosomal protein S27 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111402pil...	[more]

BLAST of ClCG06G001690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	8.6e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	6.8e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	4.4e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	5.6e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 86..140 e-value: 7.0E-27 score: 92.9
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 9..142
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 94..126
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 80..140 score: 16.744337
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 61..141 e-value: 1.5E-48 score: 164.6
None	No IPR available	PANTHER	PTHR11594:SF16	40S RIBOSOMAL PROTEIN S27-1-RELATED	coord: 9..142
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 86..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G001690.2	ClCG06G001690.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0042788	polysomal ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome