ClCG05G026940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G026940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	CG_Chr05: 38156351 .. 38157746 (-)
RNA-Seq Expression	ClCG05G026940
Synteny	ClCG05G026940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAGGAAGTTGACCTCCAAAATCTCTCATCAGTACTGGTTTTCATTAATTCTGATGGGTTAATTAAAATGTTGGTTTCTTGTTGGAGGATCTTGATTTTCTTGAGGTTCTTGAGGTCTTACCCGCTGTTTCCTAACAGCACTATTTCTATGCTGAGTTTCTGCTACTTGCCGAATGTTAACTTGAGTAAGAAGTTGAATGATTTGTGTCAAAGGACTGAAAAACTTTTGCTAAGTACTTCAATTGATGCTTCCACCAACCGCAAGCATTGGTTTTGGGAGGCTTTCACGTCTATTCTTGAGTTGTCAATCCATAATGAACCAAAGTTTGAGCGGGGATCAATGCTCTAGTACCACTTGAGGTAGAAAAGTGAGAGTAATCTCTGAATAATGCTTCAAAAATTCTATTAATGAAAGGATGACCATTTAAATAGGCTGCAAAAACTAATGACAGAAAGTTAGTTGCTTAACTAACTCAACTAGAGCCTAAAGAAAACAAAAGTTAAAAGGCTAAAATAAAACAAGAACAAGTCCAAAACATAGGGACTAACAACCGGATGAGGTCAACAAGAAAATACAAGATAACCAAGATCCAACAAAGATGATCTTTGACAACTAAAAGATGTCCTACATCATGATGTCTTTTGTGCACCCTATGCACAAATTAAGAAGCTTGCGATGCATCTTAAACCTGGAAACACTTCTAAACTGGGCGGGGGTCATCAATTTCATGCTATTAAGGAGGTCCTTTGGCTTATTTTCAGTCGTGCTTTCTTTTTGACTCTTTGAGGTGCTAGGAATGGTCATCCCTTTAAGGAGGTTTCCTTTAATTTTGATCATTTTTTGGAACTTGTACTCTCTAATACTTTTTTTGGTATACACACTTATTTACTCTTTATAGTTCTTACGTAATCTCTAGTTGGAGGCTATTTTTGTAATTCACCTATTGGTCTTTGGTGTTATTCTTCTTATTTTCATTTATCGATGAAATTGTTTCTCTTTCCAAACAAATGCGTTGGATTTTAGCTTATAGGCTATTATTTTTGCTTGATTATTTTAAAATAAAATATGTGTCTATTTTAGTTCCTAAGATGCTGCTCTTTGCACTGTCTTGGAGTTGGACTGCGAATGTGAAGATTGTTTTTACTAGTTTCTGATATTTTTTCTTTTTCTTTCAAAACCAATTTCTGACTTTTCAAGTTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCGTATCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTTTGA

mRNA sequence

ATGAACCAGGAAGTTGACCTCCAAAATCTCTCATCAGTACTGGTTTTCATTAATTCTGATGGGTTAATTAAAATGTTGGTTTCTTGTTGGAGGATCTTGATTTTCTTGAGGTTCTTGAGGTCTTACCCGCTGTTTCCTAACAGCACTATTTCTATGCTGAGTTTCTGCTACTTGCCGAATGTTAACTTGAGTAAGAAGTTGAATGATTTGTGTCAAAGGACTGAAAAACTTTTGCTAATACCACTTGAGGTAGAAAATTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCGTATCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTTTGA

Coding sequence (CDS)

ATGAACCAGGAAGTTGACCTCCAAAATCTCTCATCAGTACTGGTTTTCATTAATTCTGATGGGTTAATTAAAATGTTGGTTTCTTGTTGGAGGATCTTGATTTTCTTGAGGTTCTTGAGGTCTTACCCGCTGTTTCCTAACAGCACTATTTCTATGCTGAGTTTCTGCTACTTGCCGAATGTTAACTTGAGTAAGAAGTTGAATGATTTGTGTCAAAGGACTGAAAAACTTTTGCTAATACCACTTGAGGTAGAAAATTTACAGGTGATTGATATGCTTCTTTTCAAGGGAATGGAAGAGCTTGGTAACATTACTGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTTGTGCAAGATTTGGGCGCCAAGGATCAGGGCGTATCCAATTTTCTCAAGAACTTCTACAAGAGTAACTACTTTTGA

Protein sequence

MNQEVDLQNLSSVLVFINSDGLIKMLVSCWRILIFLRFLRSYPLFPNSTISMLSFCYLPNVNLSKKLNDLCQRTEKLLLIPLEVENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSNYF

Homology

[Close]

BLAST of ClCG05G026940 vs. NCBI nr
Match: XP_038892169.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 7.4e-26
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. NCBI nr
Match: XP_022957489.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-25
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. NCBI nr
Match: XP_023552714.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-25
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. NCBI nr
Match: XP_022985413.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-25
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. NCBI nr
Match: KAG6601118.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031916.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-25
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. ExPASy Swiss-Prot
Match: Q9LHI0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=At3g12260 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 88  QVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSN 147
           +VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SN
Sbjct: 73  KVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDFLKNFYTSN 132

Query: 148 YF 150
           YF
Sbjct: 133 YF 133

[Close]

BLAST of ClCG05G026940 vs. ExPASy TrEMBL
Match: A0A6J1JDJ2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111483420 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. ExPASy TrEMBL
Match: A0A6J1H232 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111458871 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. ExPASy TrEMBL
Match: A0A1S3BH79 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489526 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           V + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD GAKDQG+SNFLKNF
Sbjct: 67  VTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMSNFLKNF 126

Query: 144 YKSNYF 150
           Y+SNYF
Sbjct: 127 YRSNYF 132

[Close]

BLAST of ClCG05G026940 vs. ExPASy TrEMBL
Match: A0A6J1CBT6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010212 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.2e-25
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 84  VENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNF 143
           + + +VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVG EGLVQDLG KDQG+SNFLKNF
Sbjct: 67  INDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGSEGLVQDLGTKDQGISNFLKNF 126

Query: 144 YKSNYF 150
           YKSNYF
Sbjct: 127 YKSNYF 132

[Close]

BLAST of ClCG05G026940 vs. ExPASy TrEMBL
Match: A0A5A7SUY5 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007940 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.8e-25
Identity = 74/135 (54.81%), Postives = 87/135 (64.44%), Query Frame = 0


Query: 20  DGLIKMLVSCWR-----ILIFLRFLRSYPLFPNSTISMLSFCYLPNVNLSKKLNDLCQRT 79
           DG+   L  C R         L FL   P+  + +  +LSF +L    L + L+      
Sbjct: 27  DGINHALAICSRESQNPAAFLLSFLAFAPVEHSCSSFVLSFRFLGLFVLVQILSSFLWGA 86

Query: 80  EKLLLIPLEVENLQVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQ 139
                +   V  ++VIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD GAKDQ
Sbjct: 87  PYPNFLWYCVRMVKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQ 146

Query: 140 GVSNFLKNFYKSNYF 150
           G+SNFLKNFY+SNYF
Sbjct: 147 GMSNFLKNFYRSNYF 161

[Close]

BLAST of ClCG05G026940 vs. TAIR 10
Match: AT3G12260.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 97.8 bits (242), Expect = 7.7e-21
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 88  QVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGVSNFLKNFYKSN 147
           +VID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G KDQG ++FLKNFY SN
Sbjct: 73  KVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDFLKNFYTSN 132

Query: 148 YF 150
           YF
Sbjct: 133 YF 133

The following BLAST results are available for this feature:

BLAST of ClCG05G026940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892169.1	7.4e-26	92.42	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]	[more]
XP_022957489.1	3.7e-25	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata...	[more]
XP_023552714.1	3.7e-25	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo sub...	[more]
XP_022985413.1	3.7e-25	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]	[more]
KAG6601118.1	3.7e-25	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita...	[more]

BLAST of ClCG05G026940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHI0	1.1e-19	75.81	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]

BLAST of ClCG05G026940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDJ2	1.8e-25	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima...	[more]
A0A6J1H232	1.8e-25	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moscha...	[more]
A0A1S3BH79	4.0e-25	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=...	[more]
A0A6J1CBT6	5.2e-25	87.88	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Momordica charan...	[more]
A0A5A7SUY5	6.8e-25	54.81	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 6 OS=Cucumis melo var...	[more]

BLAST of ClCG05G026940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12260.1	7.7e-21	75.81	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016488	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 84..149
None	No IPR available	PANTHER	PTHR12964:SF3	BNAA05G26780D PROTEIN	coord: 84..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G026940.2	ClCG05G026940.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005747	mitochondrial respiratory chain complex I