ClCG05G026880 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G026880
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGlutamate receptor 2 plant
LocationCG_Chr05: 38103758 .. 38104093 (+)
RNA-Seq ExpressionClCG05G026880
SyntenyClCG05G026880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAAAACAAAAAACAAAAAACCGCCGGTCGCCGGATGGCACAATGTTATTCGAATTCCTTCATACAAAGACGTTCCCGGCGCCGACATCGGAGGGGGAAAAAGCGAGGAGAAGAAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAACACAAGCGGTGGCGGAGGCAGCGGCGGAAGAACCAAGGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGACGAAAACGGACACTAAGTTGAAGCAACGTACCATAGCAATTTTCTGGCAGCCGGAGATTGGATCATGTCCTTCAGCGGCGGGAATGCGTGTGAAAAGAATCCGGTGA

mRNA sequence

ATGGAAGAAAAACAAAAAACAAAAAACCGCCGGTCGCCGGATGGCACAATGTTATTCGAATTCCTTCATACAAAGACGTTCCCGGCGCCGACATCGGAGGGGGAAAAAGCGAGGAGAAGAAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAACACAAGCGGTGGCGGAGGCAGCGGCGGAAGAACCAAGGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGACGAAAACGGACACTAAGTTGAAGCAACGTACCATAGCAATTTTCTGGCAGCCGGAGATTGGATCATGTCCTTCAGCGGCGGGAATGCGTGTGAAAAGAATCCGGTGA

Coding sequence (CDS)

ATGGAAGAAAAACAAAAAACAAAAAACCGCCGGTCGCCGGATGGCACAATGTTATTCGAATTCCTTCATACAAAGACGTTCCCGGCGCCGACATCGGAGGGGGAAAAAGCGAGGAGAAGAAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAACACAAGCGGTGGCGGAGGCAGCGGCGGAAGAACCAAGGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGACGAAAACGGACACTAAGTTGAAGCAACGTACCATAGCAATTTTCTGGCAGCCGGAGATTGGATCATGTCCTTCAGCGGCGGGAATGCGTGTGAAAAGAATCCGGTGA

Protein sequence

MEEKQKTKNRRSPDGTMLFEFLHTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRTIAIFWQPEIGSCPSAAGMRVKRIR
Homology
BLAST of ClCG05G026880 vs. NCBI nr
Match: KAG6573795.1 (hypothetical protein SDJN03_27682, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0

Query: 12 SPDGTMLFEFLHTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMET 71
          SP+GTM+  F  T  FP PTSEGEKAR  SAAMIPTGKKR+  GGGGSGGRT GRTTMET
Sbjct: 3  SPEGTMIRHFHQTTMFPTPTSEGEKARSSSAAMIPTGKKRSAIGGGGSGGRTNGRTTMET 62

Query: 72 ATAARTKTDTKLKQRTIAI 91
          ATAART+TDTKLKQRTI I
Sbjct: 63 ATAARTRTDTKLKQRTIVI 81

BLAST of ClCG05G026880 vs. NCBI nr
Match: KAE8648868.1 (hypothetical protein Csa_008159, partial [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0

Query: 23 HTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTK 82
          H    P  TSEGEKARRRSAAMIPTGKKR+TSGGGG GGRT GRTTMETATAAR +TDTK
Sbjct: 26 HIAMLPTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTK 85

Query: 83 LKQRTIAIFWQPEI 97
          LKQRTIA F Q EI
Sbjct: 86 LKQRTIATFQQAEI 99

BLAST of ClCG05G026880 vs. NCBI nr
Match: EEF49536.1 (glutamate receptor 2 plant, putative [Ricinus communis])

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-06
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 20  EFLHTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKT 79
           E + +  FPA  S G+KA+   AA+IPTGK R++ GGGGSGG +KG TT++ A  A T T
Sbjct: 924 EPIRSTRFPA-VSAGDKAKNIKAAIIPTGKNRSSKGGGGSGGSSKGNTTIDAARTASTAT 983

Query: 80  DTKLKQRTIAI 91
            TK K RTI +
Sbjct: 984 LTKPKHRTIVL 993

BLAST of ClCG05G026880 vs. NCBI nr
Match: KAG5066285.1 (hypothetical protein JHK86_010016 [Glycine max])

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-06
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 41 SAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRTIAI 91
          SAAMIPTGKKR TSGGGGSGG   G TT++ A+AART+T+ K KQR +++
Sbjct: 2  SAAMIPTGKKRRTSGGGGSGGSINGSTTIDAASAARTRTEPKPKQRAMSM 51

BLAST of ClCG05G026880 vs. NCBI nr
Match: PON98760.1 (hypothetical protein TorRG33x02_053750 [Trema orientale])

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 31 TSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRTIA 90
          + EGEKA   SAAMIPTGKK + +GGGG GG+  G+ T++ A AA T+T+ KL+ R I+
Sbjct: 14 SGEGEKASNMSAAMIPTGKKSSINGGGGRGGKINGKITIDVARAASTRTEPKLRHRLIS 72

BLAST of ClCG05G026880 vs. ExPASy TrEMBL
Match: A0A0A0KWY2 (Glutamate receptor 2 plant OS=Cucumis sativus OX=3659 GN=Csa_5G623890 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-20
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0

Query: 28 PAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRT 87
          P  TSEGEKARRRSAAMIPTGKKR+TSGGGG GGRT GRTTMETATAAR +TDTKLKQRT
Sbjct: 3  PTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQRT 62

Query: 88 IAIFWQPEI 97
          IA F Q EI
Sbjct: 63 IATFQQAEI 71

BLAST of ClCG05G026880 vs. ExPASy TrEMBL
Match: B9RG81 (Glutamate receptor 2 plant, putative OS=Ricinus communis OX=3988 GN=RCOM_1452030 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-06
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 20  EFLHTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKT 79
           E + +  FPA  S G+KA+   AA+IPTGK R++ GGGGSGG +KG TT++ A  A T T
Sbjct: 924 EPIRSTRFPA-VSAGDKAKNIKAAIIPTGKNRSSKGGGGSGGSSKGNTTIDAARTASTAT 983

Query: 80  DTKLKQRTIAI 91
            TK K RTI +
Sbjct: 984 LTKPKHRTIVL 993

BLAST of ClCG05G026880 vs. ExPASy TrEMBL
Match: A0A2P5FLV3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_053750 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 31 TSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRTIA 90
          + EGEKA   SAAMIPTGKK + +GGGG GG+  G+ T++ A AA T+T+ KL+ R I+
Sbjct: 14 SGEGEKASNMSAAMIPTGKKSSINGGGGRGGKINGKITIDVARAASTRTEPKLRHRLIS 72

BLAST of ClCG05G026880 vs. ExPASy TrEMBL
Match: A0A540KIX5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_040301 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.6e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 34 GEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRTIAI 91
          GEKAR   AA++PTGK ++ +GGGGSGG  KGRTTM  A  A T TD KL   T+ +
Sbjct: 7  GEKARNTRAAIMPTGKNKSMNGGGGSGGSIKGRTTMHNARTASTSTDPKLIHCTMIL 63

BLAST of ClCG05G026880 vs. ExPASy TrEMBL
Match: A0A498JFA5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_015873 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-04
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 28 PAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRT 87
          PA    GEKAR + AA++PTGK ++ +GGGGSGG   GRTT   A  A T+ D KL   T
Sbjct: 5  PASGPAGEKARNKRAAIMPTGKNKSINGGGGSGGSINGRTTKNNARHASTRADPKLIHCT 64

Query: 88 I 89
          I
Sbjct: 65 I 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6573795.12.8e-2278.48hypothetical protein SDJN03_27682, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8648868.11.6e-2081.08hypothetical protein Csa_008159, partial [Cucumis sativus][more]
EEF49536.16.4e-0652.11glutamate receptor 2 plant, putative [Ricinus communis][more]
KAG5066285.16.4e-0666.00hypothetical protein JHK86_010016 [Glycine max][more]
PON98760.12.4e-0554.24hypothetical protein TorRG33x02_053750 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWY22.9e-2085.51Glutamate receptor 2 plant OS=Cucumis sativus OX=3659 GN=Csa_5G623890 PE=4 SV=1[more]
B9RG813.1e-0652.11Glutamate receptor 2 plant, putative OS=Ricinus communis OX=3988 GN=RCOM_1452030... [more]
A0A2P5FLV31.2e-0554.24Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_053750 PE=4 SV... [more]
A0A540KIX57.6e-0556.14Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_040301 PE=4 SV=1[more]
A0A498JFA53.8e-0452.46Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_015873 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G026880.1ClCG05G026880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane