ClCG05G025570 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G025570
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionBiotin synthesis protein BioH
LocationCG_Chr05: 36918555 .. 36919773 (-)
RNA-Seq ExpressionClCG05G025570
SyntenyClCG05G025570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGTAGATGGATATATAAAATAACATAATAATACATATTTCTCAAAAGAAAGAAAAAGAAAAACCGAACCGGACGCCCTCACGGTCTTAGAGAAGAAGAAAAATATATTTGAAAATATAATTTTAATTTCGGTGTCGCCTTTTAGGATTTAGTATAAAACGACAAACCGAATCATCTGAAACCAAAACGAAACGACACATCGGCTCCCGTTCCCCTGTTCCTAGGCACGCCCTAATTGGAAAAATTACTTCAACAAAGAGGCGACGTGCAAGCAATTTGAAGCCAGATGTTGCAGCGTCGTATCGGTATTCATAATGGTTGAAGCCATTTTGACGACGCCGAAGCTGCTGACTTCCACGACCGCATCGCTGCAGGAAACGTAGAAAGATAAGGCCCCGGAAAGCATGACCTGAAGGCTCTGCTTGTCCTTGCTCTTCAAATACTGCAAGCCCTTCTCAAGGCTGTCAATGGCGGAGTCGTAGTTCTGATTGCAAGCGTTAATGGCCTGCGCATTGGCCAGCTTCACGCTCCCTGCTTTAGCGCGTTTTGTTTCAAACAAGAGATTTTCAATGGCTATTTTAATGGCGACCGTCGGATCGGAAGCGCCTTTCACCACGGATCGGCAGAGCGGCACGTATTGGGCTTCTTGGCAGATGTCGGATCCCTGAGCTTGGCCGGCGAACAAGACGGTGGCGAGAAACACCAGTGAGAAAGAAACCAATTGCTTTTCAGCCATATTTGTAATTTAGTGGCTTTGGATTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGTTTCTTTCTCAAAGGTGTGTTTAAGTTGGGCAAATGGGGAACAGGCAGGGGATGGTTTTGTGAACTTGGCTCTGGGTTGGTTTTTATATGCTATTTCGATGACATGGCTGTAACCGCTTTCCGTAACTGCCCAATGAGAACGGGCTGTTTTGTAAGGCTTTCCTTCATCATAGAGTGA

mRNA sequence

ATGACGGGATTTAGTATAAAACGACAAACCGAATCATCTGAAACCAAAACGAAACGACACATCGGCTCCCGTTCCCCTGTTCCTAGGCACGCCCTAATTGGAAAAATTACTTCAACAAAGAGGCGACGTGCAAGCAATTTGAAGCCAGATGTTGCAGCGTCGTATCGCCATTTTGACGACGCCGAAGCTGCTGACTTCCACGACCGCATCGCTGCAGGAAACCATGACCTGAAGGCTCTGCTTGTCCTTGCTCTTCAAATACTGCAAGCCCTTCTCAAGGCTGTCAATGGCGGAGTCGTAGTTCTGATTGCAAGCGTTAATGGCCTGCGCATTGGCCAGCTTCACGCTCCCTGCTTTAGCGCGTTTTGTTTCAAACAAGAGATTTTCAATGGCTATTTTAATGGCGACCGTCGGATCGGAAGCGCCTTTCACCACGGATCGGCAGAGCGGCACGTATTGGGCTTCTTGGCAGATGTCGGATCCCTGAGCTTGGCCGGCGAACAAGACGGTTTCTTTCTCAAAGGTGTGTTTAAGTTGGGCAAATGGGGAACAGGCAGGGGATGGTTTTGTGAACTTGGCTCTGGGTTGGTTTTTATATGCTATTTCGATGACATGGCTGTAACCGCTTTCCGTAACTGCCCAATGAGAACGGGCTGTTTTGTAAGGCTTTCCTTCATCATAGAGTGA

Coding sequence (CDS)

ATGACGGGATTTAGTATAAAACGACAAACCGAATCATCTGAAACCAAAACGAAACGACACATCGGCTCCCGTTCCCCTGTTCCTAGGCACGCCCTAATTGGAAAAATTACTTCAACAAAGAGGCGACGTGCAAGCAATTTGAAGCCAGATGTTGCAGCGTCGTATCGCCATTTTGACGACGCCGAAGCTGCTGACTTCCACGACCGCATCGCTGCAGGAAACCATGACCTGAAGGCTCTGCTTGTCCTTGCTCTTCAAATACTGCAAGCCCTTCTCAAGGCTGTCAATGGCGGAGTCGTAGTTCTGATTGCAAGCGTTAATGGCCTGCGCATTGGCCAGCTTCACGCTCCCTGCTTTAGCGCGTTTTGTTTCAAACAAGAGATTTTCAATGGCTATTTTAATGGCGACCGTCGGATCGGAAGCGCCTTTCACCACGGATCGGCAGAGCGGCACGTATTGGGCTTCTTGGCAGATGTCGGATCCCTGAGCTTGGCCGGCGAACAAGACGGTTTCTTTCTCAAAGGTGTGTTTAAGTTGGGCAAATGGGGAACAGGCAGGGGATGGTTTTGTGAACTTGGCTCTGGGTTGGTTTTTATATGCTATTTCGATGACATGGCTGTAACCGCTTTCCGTAACTGCCCAATGAGAACGGGCTGTTTTGTAAGGCTTTCCTTCATCATAGAGTGA

Protein sequence

MTGFSIKRQTESSETKTKRHIGSRSPVPRHALIGKITSTKRRRASNLKPDVAASYRHFDDAEAADFHDRIAAGNHDLKALLVLALQILQALLKAVNGGVVVLIASVNGLRIGQLHAPCFSAFCFKQEIFNGYFNGDRRIGSAFHHGSAERHVLGFLADVGSLSLAGEQDGFFLKGVFKLGKWGTGRGWFCELGSGLVFICYFDDMAVTAFRNCPMRTGCFVRLSFIIE
Homology
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BLAST of ClCG05G025570 vs. ExPASy TrEMBL
Match: A0A0A0KS96 (Biotin synthesis protein BioH OS=Cucumis sativus OX=3659 GN=Csa_5G599840 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 69/121 (57.02%), Postives = 77/121 (63.64%), Query Frame = 0 

Query: 55  YRHFDDAEAADFHDRIAA--------GNHDLKALLVLALQILQALLKAVNGGVVVLIASV 114
           + HF  AE ADF   I A        G H  K   VL LQILQ  L+ V G +VVL+AS 
Sbjct: 19  FSHFHYAETADFRHSIGARNVGRQRSGKHHSKTRQVLTLQILQTFLQVVKGEIVVLVASA 78

Query: 115 NGLRIGQLHAPCFSAFCFKQEIFNGYFNGDRRIGSAFHHGSAERHVLGFLADVGSLSLAG 168
           N L I + H  CFSAFCF+QE+ NG FN  R IGSAFHHGSAER+V G  ADV SLSLAG
Sbjct: 79  NSLLIAEYHTRCFSAFCFEQEMTNGGFNRGRGIGSAFHHGSAERYVFGVYADVDSLSLAG 138

The following BLAST results are available for this feature:
BLAST of ClCG05G025570 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG05G025570 vs.
Match NameE-valueIdentityDescription
BLAST of ClCG05G025570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS961.4e-2457.02Biotin synthesis protein BioH OS=Cucumis sativus OX=3659 GN=Csa_5G599840 PE=4 SV... [more]
BLAST of ClCG05G025570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G025570.1ClCG05G025570.1mRNA