ClCG05G024210 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G024210
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RING-type domain-containing protein
Location	CG_Chr05: 35850795 .. 35851394 (-)
RNA-Seq Expression	ClCG05G024210
Synteny	ClCG05G024210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCAACCTGACCCTTCTGACCTCTCTTCTGCACTCGAAAGGCTTATTCTCAACAGAGATGTCTCTCTCATCGCACCCCTTTTCTTGGGTTTCGCCTCTATGATCCGTTCATCTCAAAATCAAGAAGTTGAAGCAACACCCACTACTTTGCCTGATCGGTTCATCTACTTCAATCCTTTTGCCCATCATTTCATGGTGATCCAAGCCACTCCCAAGGACGGCCAACCCCCGGCCTCCAAAGCCTCCATTAAAGCTATGCCCTCTGTCCCTGTTTCTGAACTTACTGAATGTGTGATTTGTTTGGAGGAGATTGAAGTCGGTGGTCTCGCTAAACAAATGCCCTGTAACCATAAATTCCATGGTGATTGCATTCAGAAATGGCTGGAGTTACATGGGTCATGCCCTGTTTGTAGATATCAGATGCCAATTGATGGTGAAGACGAAGGGAAGAAGGTTGGTGATGAAGGAACAGAGAGTAGGAGAGAAACAGAGATTTGGGTTAGTTTTTCTTTTGATAATGGCGTCAGAAATGGGGAATCTATTCAAACCCCTTCAACTGATTCTGATCATTCTTTGTACAGTGAAATGTCATAA

mRNA sequence

ATGGCTTCCCAACCTGACCCTTCTGACCTCTCTTCTGCACTCGAAAGGCTTATTCTCAACAGAGATGTCTCTCTCATCGCACCCCTTTTCTTGGGTTTCGCCTCTATGATCCGTTCATCTCAAAATCAAGAAGTTGAAGCAACACCCACTACTTTGCCTGATCGGTTCATCTACTTCAATCCTTTTGCCCATCATTTCATGGTGATCCAAGCCACTCCCAAGGACGGCCAACCCCCGGCCTCCAAAGCCTCCATTAAAGCTATGCCCTCTGTCCCTGTTTCTGAACTTACTGAATGTGTGATTTGTTTGGAGGAGATTGAAGTCGGTGGTCTCGCTAAACAAATGCCCTGTAACCATAAATTCCATGGTGATTGCATTCAGAAATGGCTGGAGTTACATGGGTCATGCCCTGTTTGTAGATATCAGATGCCAATTGATGGTGAAGACGAAGGGAAGAAGGTTGGTGATGAAGGAACAGAGAGTAGGAGAGAAACAGAGATTTGGGTTAGTTTTTCTTTTGATAATGGCGTCAGAAATGGGGAATCTATTCAAACCCCTTCAACTGATTCTGATCATTCTTTGTACAGTGAAATGTCATAA

Coding sequence (CDS)

ATGGCTTCCCAACCTGACCCTTCTGACCTCTCTTCTGCACTCGAAAGGCTTATTCTCAACAGAGATGTCTCTCTCATCGCACCCCTTTTCTTGGGTTTCGCCTCTATGATCCGTTCATCTCAAAATCAAGAAGTTGAAGCAACACCCACTACTTTGCCTGATCGGTTCATCTACTTCAATCCTTTTGCCCATCATTTCATGGTGATCCAAGCCACTCCCAAGGACGGCCAACCCCCGGCCTCCAAAGCCTCCATTAAAGCTATGCCCTCTGTCCCTGTTTCTGAACTTACTGAATGTGTGATTTGTTTGGAGGAGATTGAAGTCGGTGGTCTCGCTAAACAAATGCCCTGTAACCATAAATTCCATGGTGATTGCATTCAGAAATGGCTGGAGTTACATGGGTCATGCCCTGTTTGTAGATATCAGATGCCAATTGATGGTGAAGACGAAGGGAAGAAGGTTGGTGATGAAGGAACAGAGAGTAGGAGAGAAACAGAGATTTGGGTTAGTTTTTCTTTTGATAATGGCGTCAGAAATGGGGAATCTATTCAAACCCCTTCAACTGATTCTGATCATTCTTTGTACAGTGAAATGTCATAA

Protein sequence

MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFNPFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNGESIQTPSTDSDHSLYSEMS

Homology

[Close]

BLAST of ClCG05G024210 vs. NCBI nr
Match: XP_038891708.1 (E3 ubiquitin-protein ligase MPSR1-like [Benincasa hispida])

HSP 1 Score: 371.3 bits (952), Expect = 5.2e-99
Identity = 177/193 (91.71%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFN 60
           MASQPDPS+L SALERL LNRDVSLIAPLFLGFASMIR+SQ+QE+EATPTTLPDRFI+FN
Sbjct: 1   MASQPDPSELGSALERLFLNRDVSLIAPLFLGFASMIRTSQDQEIEATPTTLPDRFIFFN 60

Query: 61  PFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHK 120
           PFAH  +VIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGL+KQMPCNHK
Sbjct: 61  PFAHQLIVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLSKQMPCNHK 120

Query: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNG 180
           FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKV +EGTESR ETEIWVSFSFDN +RNG
Sbjct: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVDNEGTESRGETEIWVSFSFDNTIRNG 180

Query: 181 ESIQTPSTDSDHS 194
           ESIQTPSTDSDHS
Sbjct: 181 ESIQTPSTDSDHS 193

[Close]

BLAST of ClCG05G024210 vs. NCBI nr
Match: XP_008446365.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0034425.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK17709.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 367.1 bits (941), Expect = 9.7e-98
Identity = 172/193 (89.12%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFN 60
           MAS PDPSD+SSALERL+LNRDVSLIAPLFLGFASMIRSSQN E E TPTTLPDRFI+FN
Sbjct: 1   MASPPDPSDISSALERLLLNRDVSLIAPLFLGFASMIRSSQNHENEPTPTTLPDRFIFFN 60

Query: 61  PFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHK 120
           PF+H  MV+QATPKDGQPPASKASIKAMPS+PVSE+TECVICL+EIEVGGLAKQMPCNHK
Sbjct: 61  PFSHQLMVVQATPKDGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMPCNHK 120

Query: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNG 180
           FHG+CIQKWLELHGSCPVCRYQMPIDG+DEGKKVGDEGTESR ETEIWVSFSFD+ +RNG
Sbjct: 121 FHGECIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGTESRGETEIWVSFSFDHSIRNG 180

Query: 181 ESIQTPSTDSDHS 194
           ES+QTPSTDSDHS
Sbjct: 181 ESVQTPSTDSDHS 193

[Close]

BLAST of ClCG05G024210 vs. NCBI nr
Match: XP_011655684.1 (E3 ubiquitin-protein ligase MPSR1 [Cucumis sativus] >KGN51927.1 hypothetical protein Csa_009131 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 1.0e-94
Identity = 167/193 (86.53%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFN 60
           MAS PDPSDL+SALERL+LNRDVSLIAPLFLGFASM+RSSQNQE + TPTTLPDRFI+FN
Sbjct: 1   MASPPDPSDLASALERLLLNRDVSLIAPLFLGFASMVRSSQNQESDPTPTTLPDRFIFFN 60

Query: 61  PFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHK 120
           PF+H  MV+QATPK GQPPASKASIKAMPS+PVSE+TECVICL+EIEVG LAKQMPCNHK
Sbjct: 61  PFSHQLMVVQATPKHGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGRLAKQMPCNHK 120

Query: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNG 180
           FHGDCIQKWLELHGSCPVCRYQMPIDG+DEGKKVGDEG ESR ETEIWVSFSFD+ + NG
Sbjct: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGAESRGETEIWVSFSFDHSIGNG 180

Query: 181 ESIQTPSTDSDHS 194
           ES+QTPST+SDHS
Sbjct: 181 ESVQTPSTESDHS 193

[Close]

BLAST of ClCG05G024210 vs. NCBI nr
Match: KAG6601438.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-77
Identity = 151/199 (75.88%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLI-LNRDVSLIAPLFLGFASMIRS----SQNQEVEATPTTLPDR 60
           MAS P  S+LSSA E L+ +NRD+S IAPLFLGFAS+IRS    S N E++  P TLP+R
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIP-TLPNR 60

Query: 61  FIYFNPFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQM 120
           FI+FNPF    MVIQATPK+G PPASKASIKAMPS+PVSELTECVICLEEIE G LAKQM
Sbjct: 61  FIFFNPFPPQLMVIQATPKEGLPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQM 120

Query: 121 PCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDN 180
           PC+HKFHGDCI+KWLELHGSCP+CRYQMPID EDEGKKV +EG+E R E EIWVSFSFDN
Sbjct: 121 PCSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDN 180

Query: 181 GVRNGESIQT-PSTDSDHS 194
             RNGES+QT PSTDSDHS
Sbjct: 181 VTRNGESVQTPPSTDSDHS 198

[Close]

BLAST of ClCG05G024210 vs. NCBI nr
Match: XP_023547759.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-77
Identity = 150/199 (75.38%), Postives = 167/199 (83.92%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLI-LNRDVSLIAPLFLGFASMIRS----SQNQEVEATPTTLPDR 60
           MAS P  S+LSSA E L+ +NRD+S IAPLFLGFAS+IRS    S N E++  P TLP+R
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIP-TLPNR 60

Query: 61  FIYFNPFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQM 120
           FI+FNPF    MVI ATPK+GQPPASKASIKAMPS+PVSELTECVICLEEIE G LAKQM
Sbjct: 61  FIFFNPFPPQLMVIHATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQM 120

Query: 121 PCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDN 180
           PC HKFHGDCI+KWLELHGSCP+CRYQMPID EDEGKK+ +EG+E R E EIWVSFSFDN
Sbjct: 121 PCTHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKIDEEGSERRGEREIWVSFSFDN 180

Query: 181 GVRNGESIQT-PSTDSDHS 194
             RNGES+QT PSTDSDHS
Sbjct: 181 VTRNGESVQTPPSTDSDHS 198

[Close]

BLAST of ClCG05G024210 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 79/185 (42.70%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 8   SDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFNPFAHHFM 67
           ++ SS   R + NRD+ L  P  LGF+    S+ + +  A+     +R I  NPF    +
Sbjct: 11  TETSSVSGRFLRNRDLYLFLPFLLGFSDQESSNGDDDDVASSR---ERIILVNPFTQGMI 70

Query: 68  VIQATP-------------KDGQPPASKASIKAMPSVPVSELT-ECVICLEEIEVGGLAK 127
           V++ +              ++G+PPASKASI AMP V +     ECVICLEE +     K
Sbjct: 71  VLEGSSGMNPLLRSLLESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVK 130

Query: 128 QMPCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSF 179
           +MPC H+FHG CI+KWL  HGSCPVCRY+MP+DG++ GKK  D         EIWV FSF
Sbjct: 131 EMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPVDGDEIGKKRND-------GNEIWVRFSF 185

[Close]

BLAST of ClCG05G024210 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.9e-22
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 74  KDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHKFHGDCIQKWLELH 133
           ++G PPA K +++A+P+V + E+  C +CL+++EVG  AKQMPC HKFH  CI  WLELH
Sbjct: 174 RNGTPPAKKEAVEALPTVKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELH 233

Query: 134 GSCPVCRYQMPIDGEDEGKKVGDEGTESRRE 165
            SCPVCR+++P    +E K + +     R E
Sbjct: 234 SSCPVCRFELP---SEETKDLNEPSNIGRVE 261

[Close]

BLAST of ClCG05G024210 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-21
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 76  GQPPASKASIKAMPSVPV------SELTECVICLEEIEVGGLAKQMPCNHKFHGDCIQKW 135
           G PPASK++I A+P+V V      SE+ +C +C++E E G   KQMPC H FH DC+  W
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPW 246

Query: 136 LELHGSCPVCRYQMPIDGED-EGKKVGDEGT 160
           LELH SCPVCR+++P D  D E +  G +G+
Sbjct: 247 LELHNSCPVCRFELPTDDPDYENRSQGSQGS 277

[Close]

BLAST of ClCG05G024210 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-20
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 76  GQPPASKASIKAMPSVPV------SELTECVICLEEIEVGGLAKQMPCNHKFHGDCIQKW 135
           G PPASK++I+A+P V +      SE  +C +C+++ E G  AKQMPC H +H DC+  W
Sbjct: 195 GTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPW 254

Query: 136 LELHGSCPVCRYQMPIDGEDEGKKV-GDEGT 160
           LELH SCPVCR+++P D  D  ++V G +GT
Sbjct: 255 LELHNSCPVCRHELPTDDPDYERRVRGAQGT 285

[Close]

BLAST of ClCG05G024210 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-17
Identity = 47/119 (39.50%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 74  KDGQPPASKASIKAMPSVPVSEL-----TECVICLEEIEVGGLAKQMPCNHKFHGDCIQK 133
           + G PPASK++I+++P V +S+        C +C E  E G   ++MPC H FHGDCI  
Sbjct: 185 RSGNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVP 244

Query: 134 WLELHGSCPVCRYQMPID----GEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNGESI 184
           WL +  SCPVCR+++P D      +E   VG   T  R     +    F+ GVR GE I
Sbjct: 245 WLSIRNSCPVCRFELPSDPIQRSNEEEHAVG--MTIWRLPGGGFAVGRFNAGVREGERI 301

[Close]

BLAST of ClCG05G024210 vs. ExPASy TrEMBL
Match: A0A5D3D3N1 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00370 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.7e-98
Identity = 172/193 (89.12%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFN 60
           MAS PDPSD+SSALERL+LNRDVSLIAPLFLGFASMIRSSQN E E TPTTLPDRFI+FN
Sbjct: 1   MASPPDPSDISSALERLLLNRDVSLIAPLFLGFASMIRSSQNHENEPTPTTLPDRFIFFN 60

Query: 61  PFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHK 120
           PF+H  MV+QATPKDGQPPASKASIKAMPS+PVSE+TECVICL+EIEVGGLAKQMPCNHK
Sbjct: 61  PFSHQLMVVQATPKDGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMPCNHK 120

Query: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNG 180
           FHG+CIQKWLELHGSCPVCRYQMPIDG+DEGKKVGDEGTESR ETEIWVSFSFD+ +RNG
Sbjct: 121 FHGECIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGTESRGETEIWVSFSFDHSIRNG 180

Query: 181 ESIQTPSTDSDHS 194
           ES+QTPSTDSDHS
Sbjct: 181 ESVQTPSTDSDHS 193

[Close]

BLAST of ClCG05G024210 vs. ExPASy TrEMBL
Match: A0A1S3BFQ2 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.7e-98
Identity = 172/193 (89.12%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFN 60
           MAS PDPSD+SSALERL+LNRDVSLIAPLFLGFASMIRSSQN E E TPTTLPDRFI+FN
Sbjct: 1   MASPPDPSDISSALERLLLNRDVSLIAPLFLGFASMIRSSQNHENEPTPTTLPDRFIFFN 60

Query: 61  PFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHK 120
           PF+H  MV+QATPKDGQPPASKASIKAMPS+PVSE+TECVICL+EIEVGGLAKQMPCNHK
Sbjct: 61  PFSHQLMVVQATPKDGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMPCNHK 120

Query: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNG 180
           FHG+CIQKWLELHGSCPVCRYQMPIDG+DEGKKVGDEGTESR ETEIWVSFSFD+ +RNG
Sbjct: 121 FHGECIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGTESRGETEIWVSFSFDHSIRNG 180

Query: 181 ESIQTPSTDSDHS 194
           ES+QTPSTDSDHS
Sbjct: 181 ESVQTPSTDSDHS 193

[Close]

BLAST of ClCG05G024210 vs. ExPASy TrEMBL
Match: A0A0A0KU18 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.9e-95
Identity = 167/193 (86.53%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFN 60
           MAS PDPSDL+SALERL+LNRDVSLIAPLFLGFASM+RSSQNQE + TPTTLPDRFI+FN
Sbjct: 1   MASPPDPSDLASALERLLLNRDVSLIAPLFLGFASMVRSSQNQESDPTPTTLPDRFIFFN 60

Query: 61  PFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHK 120
           PF+H  MV+QATPK GQPPASKASIKAMPS+PVSE+TECVICL+EIEVG LAKQMPCNHK
Sbjct: 61  PFSHQLMVVQATPKHGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGRLAKQMPCNHK 120

Query: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNG 180
           FHGDCIQKWLELHGSCPVCRYQMPIDG+DEGKKVGDEG ESR ETEIWVSFSFD+ + NG
Sbjct: 121 FHGDCIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGAESRGETEIWVSFSFDHSIGNG 180

Query: 181 ESIQTPSTDSDHS 194
           ES+QTPST+SDHS
Sbjct: 181 ESVQTPSTESDHS 193

[Close]

BLAST of ClCG05G024210 vs. ExPASy TrEMBL
Match: A0A6J1GWR8 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111458226 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 151/199 (75.88%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLI-LNRDVSLIAPLFLGFASMIRS----SQNQEVEATPTTLPDR 60
           MAS P  S+LSSA E L+ +NRD+S IAPLFLGFAS+IRS    S N E++  P TLP+R
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIP-TLPNR 60

Query: 61  FIYFNPFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQM 120
           FI+FNPF    MVIQATPK+GQPPASKASIKAMPS+PVSELTECVICLEEIE G LAKQM
Sbjct: 61  FIFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQM 120

Query: 121 PCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDN 180
           PC+HKFHGDCI+KWLELHGSCP+CRYQMPID EDEGKKV +EG+E R E EIWVSFSFDN
Sbjct: 121 PCSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDN 180

Query: 181 GVRNGESIQT-PSTDSDHS 194
             RNGES+QT PST SDHS
Sbjct: 181 VTRNGESVQTPPSTYSDHS 198

[Close]

BLAST of ClCG05G024210 vs. ExPASy TrEMBL
Match: A0A6J1HTX2 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC111467433 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.3e-75
Identity = 144/198 (72.73%), Postives = 164/198 (82.83%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRS----SQNQEVEATPTTLPDRF 60
           M S+PDPS+LSSALE LILN DVSL+AP FLGFA+MI +    S NQ +E  P TLPDRF
Sbjct: 1   MPSEPDPSELSSALETLILNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNP-TLPDRF 60

Query: 61  IYFNPFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMP 120
           I+FNPF H  ++IQ+TPK+ QPPASKASI AMPSV VS  TECVICL+EIEVGG+AK+MP
Sbjct: 61  IFFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMP 120

Query: 121 CNHKFHGDCIQKWLELHGSCPVCRYQMPI-DGEDEGKKVGDEGTESRRETEIWVSFSFDN 180
           CNHKFHGDCI+KWLELHGSCPVCRY+MP+ D EDEGKKV DEGTE   E EIWVSFSFDN
Sbjct: 121 CNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDN 180

Query: 181 GVRNGESIQTPSTDSDHS 194
            + N +S+QTP  DSDHS
Sbjct: 181 PMGNQDSLQTPPIDSDHS 197

[Close]

BLAST of ClCG05G024210 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 8.6e-36
Identity = 79/185 (42.70%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 8   SDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTTLPDRFIYFNPFAHHFM 67
           ++ SS   R + NRD+ L  P  LGF+    S+ + +  A+     +R I  NPF    +
Sbjct: 11  TETSSVSGRFLRNRDLYLFLPFLLGFSDQESSNGDDDDVASSR---ERIILVNPFTQGMI 70

Query: 68  VIQATP-------------KDGQPPASKASIKAMPSVPVSELT-ECVICLEEIEVGGLAK 127
           V++ +              ++G+PPASKASI AMP V +     ECVICLEE +     K
Sbjct: 71  VLEGSSGMNPLLRSLLESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVK 130

Query: 128 QMPCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSF 179
           +MPC H+FHG CI+KWL  HGSCPVCRY+MP+DG++ GKK  D         EIWV FSF
Sbjct: 131 EMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPVDGDEIGKKRND-------GNEIWVRFSF 185

[Close]

BLAST of ClCG05G024210 vs. TAIR 10
Match: AT1G14200.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.8e-24
Identity = 63/188 (33.51%), Postives = 92/188 (48.94%), Query Frame = 0


Query: 1   MASQPDPSDLSSALERLILNRDVSLIAPLFLGFASMIRSSQNQEVEATPTT-----LPDR 60
           M+S+ D  + SS  ER+I  R   L   L +  A   R   + +     TT     L  R
Sbjct: 1   MSSENDFVEFSSMFERIIQGRGDGLSRFLPVIVALAAREDDDDQGSTDQTTRRGDPLSPR 60

Query: 61  FIYFNPFAHHFMVIQATPKDGQPPASKASIKAMPSVPVSELTE-----CVICLEEIEVGG 120
           F+     +          K G+ PA K+ ++ MP V + E  E     C ICL+E   G 
Sbjct: 61  FVMIGSRSGLDDFFSDGGKQGRSPALKSEVENMPRVVIGEDKEKYGGSCAICLDEWSKGD 120

Query: 121 LAKQMPCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVS 179
           +A +MPC HKFH  C+++WL  H +CP+CRY+MP++  +E KK+G           IW+ 
Sbjct: 121 VAAEMPCKHKFHSKCVEEWLGRHATCPMCRYEMPVEEVEEEKKIG-----------IWIG 177

[Close]

BLAST of ClCG05G024210 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 76  GQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLAKQMPCNHKFHGDCIQKWLELHGS 135
           G PPA K +++A+ +V + E  +C +CL++ E+G  AK MPC HKFH DC+  WLELH S
Sbjct: 200 GTPPAKKEAVEALATVKIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSS 259

Query: 136 CPVCRYQMPID 147
           CPVCRYQ+P D
Sbjct: 260 CPVCRYQLPAD 270

[Close]

BLAST of ClCG05G024210 vs. TAIR 10
Match: AT3G13430.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 20  NRDVSLIAPLFLGFASMIRSSQNQ-EVEATPT-TLPDRFI--YFNPFAHHFMVIQATPKD 79
           N D S +  L   F   IR  Q+  +  + P+ +L D FI   F              + 
Sbjct: 141 NPDNSELVVLINSFNQRIRVHQDSVDTTSVPSGSLGDYFIGPGFETLLQRLAENDLNNRY 200

Query: 80  GQPPASKASIKAMPSVPVSE-LTECVICLEEIEVGGLAKQMPCNHKFHGDCIQKWLELHG 139
           G PPA+K +++A+  V + + L +C +CL++ E+G  AK+MPC HKFH DC+  WLELH 
Sbjct: 201 GTPPATKEAVEALAMVKIEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHS 260

Query: 140 SCPVCRYQMPIDGEDEGKKVGDEGTESRRETEIWVSFSFDNGVRNGESIQTPSTDS 191
           SCPVCRY +P   +DE K       E+ R  +     S  +   NG S  + S +S
Sbjct: 261 SCPVCRYLLPTGDDDEPK----TDAETSRNDDNNEDISNASMASNGSSPDSSSNNS 312

[Close]

BLAST of ClCG05G024210 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 76  GQPPASKASIKAMPSVPV------SELTECVICLEEIEVGGLAKQMPCNHKFHGDCIQKW 135
           G PPASK++I A+P+V V      SE+ +C +C++E E G   KQMPC H FH DC+  W
Sbjct: 187 GTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPW 246

Query: 136 LELHGSCPVCRYQMPIDGED-EGKKVGDEGT 160
           LELH SCPVCR+++P D  D E +  G +G+
Sbjct: 247 LELHNSCPVCRFELPTDDPDYENRSQGSQGS 277

The following BLAST results are available for this feature:

BLAST of ClCG05G024210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891708.1	5.2e-99	91.71	E3 ubiquitin-protein ligase MPSR1-like [Benincasa hispida]	[more]
XP_008446365.1	9.7e-98	89.12	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0034425.1 E...	[more]
XP_011655684.1	1.0e-94	86.53	E3 ubiquitin-protein ligase MPSR1 [Cucumis sativus] >KGN51927.1 hypothetical pro...	[more]
KAG6601438.1	1.9e-77	75.88	E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023547759.1	1.9e-77	75.38	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG05G024210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQX2	1.2e-34	42.70	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
Q6AVN2	6.9e-22	47.25	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
Q8LPN7	4.5e-21	49.45	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
P0CH30	2.9e-20	48.35	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q9SNB6	6.7e-17	39.50	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]

BLAST of ClCG05G024210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3N1	4.7e-98	89.12	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BFQ2	4.7e-98	89.12	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 P...	[more]
A0A0A0KU18	4.9e-95	86.53	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 P...	[more]
A0A6J1GWR8	1.6e-77	75.88	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1HTX2	3.3e-75	72.73	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC1114674...	[more]

BLAST of ClCG05G024210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26800.1	8.6e-36	42.70	RING/U-box superfamily protein	[more]
AT1G14200.1	5.8e-24	33.51	RING/U-box superfamily protein	[more]
AT1G55530.1	3.2e-22	54.93	RING/U-box superfamily protein	[more]
AT3G13430.1	3.2e-22	35.23	RING/U-box superfamily protein	[more]
AT3G19950.1	3.2e-22	49.45	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 99..139 e-value: 4.2E-8 score: 42.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 98..140 e-value: 1.0E-13 score: 51.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 99..140 score: 12.666314
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 65..146 e-value: 4.1E-21 score: 76.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..199
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 53..178
None	No IPR available	PANTHER	PTHR15710:SF100	RING/U-BOX SUPERFAMILY PROTEIN-RELATED	coord: 53..178
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 98..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G024210.1	ClCG05G024210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity