ClCG05G024170 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G024170
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transcription termination factor MTEF1, chloroplastic
Location	CG_Chr05: 35823962 .. 35827226 (+)
RNA-Seq Expression	ClCG05G024170
Synteny	ClCG05G024170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATCCGACTCCAACTTCCTCCACCATGCTTCCTCTTCCTCTTTCCTCGGTCCTCAGTCCCATCTCTTAAGCCCTTGAGAAACCCTAATTTCAGAAAACCTCGGTTCGCCCTTTCTCTCAATACCCAATTTTCCGACCACTCCGACTCCGGCATCCTTTTCCGGGAGAAAATACTCTACCTCGAGAATCACCTTAATGTCGATTTCCGGAAAGCCTTCCGGGAGAATCCCCATTCTCGCTCCGCCACTCTCTCCACCCTCAAATCCGTTGAGGTTTGTCTCTCCTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTTCTCGACATGTACCCCAAACTCCTCACCTCCAATCCAGACTATGATCTTTACCCCATCTTCGATTTCCTTCTTAATGAGGTTCAAATTCCGTTTCCCGACATTCGAAAATCCATAATTCGATGCCCTAGAATTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGTGACCTAGGTTTCGTTGGGTTGAACGCCATCACGTGCCAGACGACAATGCTACTGGTCTCGAGTGTTGAACATACACTTTTGCCTAAGATTCAGTACCTTGAGAGCTTGGGCTTATCGCACGAGGATGTGGTTAATATGGTGTTAAGGTCTCCTGGGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAGTGAGTTATTTCTTAGGAGACATGGAGGGCGATTTGTTGGAATTGAAAAGTTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGGAAGATTATGCCGCGTCATCGTTCGTTGGTTGAACATGGATTGTCACTTCCTTTGTCGAAAATGCTGAAGGTTAGTGACGGGGAGTTCACTGCAAGGTTGATAGAAATGCGATTGCAGTCCTTGACGGTTGATCGTTGAAGTGAGTTGCTTTGCTTCTTGTAGTTTTGTAGTTTCTTTGGATGCGTTTATTTAGGGACCTTATTTGTCTGTATATTCCGGCAAATCATTCCCTGTTTTTCCCTCCCTTGTGGGGTTGTGGGTTTTTCAACGTGTTAGAAAGTAATTTTAGAATCTTCAGTCGGTCATTAAAACTGCAATTGTTTTGCATGATTTCGTGGTTCATATGCTAATTGTGAGTATGGAATTAAGATGTGAGTTTGGCAGGCAGGTCCTGGAAAATATATCATATGTTAGTTGTTGAAGATTATGACTTTGAACCAATGCATTAGTACTGTCGAAAATTATGAAAAATTATGAATAATAGCAAGTCCAACAACTGATGTGTGGCGTAGCTATTGAGTTAAAACTTTCAAGTGATATCAGTAAGCTCTGCTCATTTGCTGCAGCCAGACTATACTCAGTTCCTTTCTATGTGGATCCTGGAAGGTGAACATTTGGTTTATTTCTATTTTGATTTTGGATTAAGGGATATCTGAAATCCATTAATTAATGGGCAGTTGGTGTTGGGATTTTTTTATTGGTAGCAATGTATAAATTTTACTTGTGTTGCACTTTATGATGCAAGATCTTGATTGGTGCTGGAGCATCTTTATGATTTGTATCAACTGTCTAACTTGCACTGGATTGAATCCTATCATCCTATGTTTCAACAACACCAGCACATCTTGTTTAACAATAGTTTTGAAAATCTTTTAATCATGGAATCAACTTTGTTTGCAGTACTTGAACTAAAGAGAACAGATGCAACATAGCTGCAACAATTTTGTTATTGAGATAAAAATGATATTCCGTGAACAAATTACACAATGCTTCACTTGCAATAACAAAAATACATGGATCTTTGTATTTCCTTGGGGTTCTTTTGTGTTTTCCAGTTCCCCTTTTTTTCCTCTTATTCAACATGTTTTGAATGGAAACTAATCAGATGGTAATGGCTGTAGTCAAGAAGAGAGGGCGAAGAAAAAGTTTTCAATGCCTCGGTATATCTGTTTTATTGTACTCATACCCTGGAACTTGAATCACAATCTGTCCCACATACACGTGCTGCTATGTGGAAATCCTGTAGGAGCACGGCTCATGTTAGTTTATGTTAACTTTTTCCTTTCTTTGTGCAGGAACTGTGATGGAAATGATGATGCTACAGCTCGATCGACAAGACCAGGCATTCCACCATATTCATGTGTTAATGCAGGCCTTGACCATCTAAATTGGTTGGAGGGATTCACAAGATTGTTCCCATCTTGAGTGAGATCTTCCAGTCAGAATGTTAACTATTTAAACAGAGAATACGTAGAAGACAGAGACTCAACGTCTTCTACAATTACCATTTGTTGATACAACGCCGGCCCTGAATACTGTAGTTTGTTGAGAGACTTGCAAGTTTGGCCCCCATCCCAAATGACTGCATCACATCTGGAAGATTGCTGTTTAAGTAGGGAATAGCCTGATAGTAATCAAATTATGCTTGAACCTCTACCATCACTTGAATTTAATTTCCTATGGGATTTGTAAGAACACTCAACCTGTATATTCTAATCCTTGGCCATTGTTTGAAACTCATCCAGAAAAAAACATGTGGTTGGAATTGCAAAAGGCTCAAATTTCAAGGAAGAAGAAAGGGAAGGATAAGGTGAACCCCGAAATCATATGATAACTTAAGGCAATGTGCATCTCCGGGCTATTAATGCAGTCTACTGAATCATCAGTTGGACTTGAAATTATATTTCTGGTGGAAGAAAAAGTTAGTGTGAAAATTAAACTAGATTTTGTCCCACCAAAGTTAGAAACAATGAGAGATTTCATAATGCATGATGATTCATTTTCTTGTTGAAACATGAGCCGAAGGACACGGTTTCTTGCTGCAGAAATGCATCACTGTTCGCAGTCCAGATTCCAGGGTACGTTCTCCATTACATGACAAGTTTTGAAGGGTACAGTATGAAAAGGCCTTAGGCTCATCTCTGTTTCTCGGGACAACAAATGCAAATGCAAATTTGGGTCAGCAGTCGTCACCTCTGGACCCTTTACCTTCCTACAATCAATTTGCTCAGACACAGAAAAACAAGAGAGAAGGCATCTGTCCCATTCTTTAATCATTCACCCTCGAAGGATGGGATGAATTTTGATTTGAAATTCATGGTCTTCATTTAATTGTCTCTCTCTACTCTAAACAGTATTTATATTATGGTTGGTTGCCTCTAAGACAGATCTGATTCAGAGGAGAACGACGTTCTGCAGAAGTTAAGTTGGTTTCGATACTTTACATTTACTTAAGGAGATTTGATAGGATTAATTTTAG

mRNA sequence

ATGATAATCCGACTCCAACTTCCTCCACCATGCTTCCTCTTCCTCTTTCCTCGGTCCTCAGTCCCATCTCTTAAGCCCTTGAGAAACCCTAATTTCAGAAAACCTCGGTTCGCCCTTTCTCTCAATACCCAATTTTCCGACCACTCCGACTCCGGCATCCTTTTCCGGGAGAAAATACTCTACCTCGAGAATCACCTTAATGTCGATTTCCGGAAAGCCTTCCGGGAGAATCCCCATTCTCGCTCCGCCACTCTCTCCACCCTCAAATCCGTTGAGGTTTGTCTCTCCTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTTCTCGACATGTACCCCAAACTCCTCACCTCCAATCCAGACTATGATCTTTACCCCATCTTCGATTTCCTTCTTAATGAGGTTCAAATTCCGTTTCCCGACATTCGAAAATCCATAATTCGATGCCCTAGAATTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGTGACCTAGGTTTCGTTGGGTTGAACGCCATCACGTGCCAGACGACAATGCTACTGGTCTCGAGTGTTGAACATACACTTTTGCCTAAGATTCAGTACCTTGAGAGCTTGGGCTTATCGCACGAGGATGTGGTTAATATGGTGTTAAGGTCTCCTGGGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAGTGAGTTATTTCTTAGGAGACATGGAGGGCGATTTGTTGGAATTGAAAAGTTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGGAAGATTATGCCGCGTCATCGTTCGTTGGTTGAACATGGATTGTCACTTCCTTTGTCGAAAATGCTGAAGTCGGTCATTAAAACTGCAATTGTTTTGCATGATTTCGTGGTTCATATGCTAATTGTGAGTATGGAATTAAGATCTATTGAGTTAAAACTTTCAAGTGATATCAGTAAGCTCTGCTCATTTGCTGCAGCCAGACTATACTCAGTTCCTTTCTATGTGGATCCTGGAAGGAACTGTGATGGAAATGATGATGCTACAGCTCGATCGACAAGACCAGGCATTCCACCATATTCATGTGTTAATGCAGGCCTTGACCATCTAAATTGGTTGGAGGGATTCACAAGATTGTTCCCATCTTGAGTGAGATCTTCCAGTCAGAATGTTAACTATTTAAACAGAGAATACGTAGAAGACAGAGACTCAACGTCTTCTACAATTACCATTTGTTGATACAACGCCGGCCCTGAATACTGTAGTTTGTTGAGAGACTTGCAAGTTTGGCCCCCATCCCAAATGACTGCATCACATCTGGAAGATTGCTGTTTAAGTAGGGAATAGCCTGATAGTAATCAAATTATGCTTGAACCTCTACCATCACTTGAATTTAATTTCCTATGGGATTTGTAAGAACACTCAACCTGTATATTCTAATCCTTGGCCATTGTTTGAAACTCATCCAGAAAAAAACATGTGGTTGGAATTGCAAAAGGCTCAAATTTCAAGGAAGAAGAAAGGGAAGGATAAGGTGAACCCCGAAATCATATGATAACTTAAGGCAATGTGCATCTCCGGGCTATTAATGCAGTCTACTGAATCATCAGTTGGACTTGAAATTATATTTCTGGTGGAAGAAAAAGTTAGTGTGAAAATTAAACTAGATTTTGTCCCACCAAAGTTAGAAACAATGAGAGATTTCATAATGCATGATGATTCATTTTCTTGTTGAAACATGAGCCGAAGGACACGGTTTCTTGCTGCAGAAATGCATCACTGTTCGCAGTCCAGATTCCAGGGTACGTTCTCCATTACATGACAAGTTTTGAAGGGTACAGTATGAAAAGGCCTTAGGCTCATCTCTGTTTCTCGGGACAACAAATGCAAATGCAAATTTGGGTCAGCAGTCGTCACCTCTGGACCCTTTACCTTCCTACAATCAATTTGCTCAGACACAGAAAAACAAGAGAGAAGGCATCTGTCCCATTCTTTAATCATTCACCCTCGAAGGATGGGATGAATTTTGATTTGAAATTCATGGTCTTCATTTAATTGTCTCTCTCTACTCTAAACAGTATTTATATTATGGTTGGTTGCCTCTAAGACAGATCTGATTCAGAGGAGAACGACGTTCTGCAGAAGTTAAGTTGGTTTCGATACTTTACATTTACTTAAGGAGATTTGATAGGATTAATTTTAG

Coding sequence (CDS)

ATGATAATCCGACTCCAACTTCCTCCACCATGCTTCCTCTTCCTCTTTCCTCGGTCCTCAGTCCCATCTCTTAAGCCCTTGAGAAACCCTAATTTCAGAAAACCTCGGTTCGCCCTTTCTCTCAATACCCAATTTTCCGACCACTCCGACTCCGGCATCCTTTTCCGGGAGAAAATACTCTACCTCGAGAATCACCTTAATGTCGATTTCCGGAAAGCCTTCCGGGAGAATCCCCATTCTCGCTCCGCCACTCTCTCCACCCTCAAATCCGTTGAGGTTTGTCTCTCCTCCATGGGACTCGAGCTCTCTGCAGTCGGCCGCGTTCTCGACATGTACCCCAAACTCCTCACCTCCAATCCAGACTATGATCTTTACCCCATCTTCGATTTCCTTCTTAATGAGGTTCAAATTCCGTTTCCCGACATTCGAAAATCCATAATTCGATGCCCTAGAATTCTCGTCTCCGACTTGGACCTTCAATTGCGACCTGCGTTGAAGTTCTTGCGTGACCTAGGTTTCGTTGGGTTGAACGCCATCACGTGCCAGACGACAATGCTACTGGTCTCGAGTGTTGAACATACACTTTTGCCTAAGATTCAGTACCTTGAGAGCTTGGGCTTATCGCACGAGGATGTGGTTAATATGGTGTTAAGGTCTCCTGGGTTGTTGACTTATAGCATTCAAAACAATTTGGTTCCTAAAGTGAGTTATTTCTTAGGAGACATGGAGGGCGATTTGTTGGAATTGAAAAGTTTTCCGCAATATTTTTCGTTTAGTTTGGAGAGGAAGATTATGCCGCGTCATCGTTCGTTGGTTGAACATGGATTGTCACTTCCTTTGTCGAAAATGCTGAAGTCGGTCATTAAAACTGCAATTGTTTTGCATGATTTCGTGGTTCATATGCTAATTGTGAGTATGGAATTAAGATCTATTGAGTTAAAACTTTCAAGTGATATCAGTAAGCTCTGCTCATTTGCTGCAGCCAGACTATACTCAGTTCCTTTCTATGTGGATCCTGGAAGGAACTGTGATGGAAATGATGATGCTACAGCTCGATCGACAAGACCAGGCATTCCACCATATTCATGTGTTAATGCAGGCCTTGACCATCTAAATTGGTTGGAGGGATTCACAAGATTGTTCCCATCTTGA

Protein sequence

MIIRLQLPPPCFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKILYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNPDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLGDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLKSVIKTAIVLHDFVVHMLIVSMELRSIELKLSSDISKLCSFAAARLYSVPFYVDPGRNCDGNDDATARSTRPGIPPYSCVNAGLDHLNWLEGFTRLFPS

Homology

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BLAST of ClCG05G024170 vs. NCBI nr
Match: XP_038892906.1 (transcription termination factor MTEF1, chloroplastic [Benincasa hispida] >XP_038892907.1 transcription termination factor MTEF1, chloroplastic [Benincasa hispida])

HSP 1 Score: 516.5 bits (1329), Expect = 1.9e-142
Identity = 265/285 (92.98%), Postives = 273/285 (95.79%), Query Frame = 0


Query: 1   MIIRLQLPPPCFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKIL 60
           MI R QLPPPC  FLFPRSS  +LKPLRNPNFRKPRFALSLNTQFSDHSD+G+LFREKIL
Sbjct: 1   MISRFQLPPPC--FLFPRSSFQALKPLRNPNFRKPRFALSLNTQFSDHSDAGLLFREKIL 60

Query: 61  YLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNP 120
           YLENHLNVDFRKAFRENP SRSATLST+KSVEVCLSSMGLELSAVGRVLDMYPKLLT+NP
Sbjct: 61  YLENHLNVDFRKAFRENPDSRSATLSTVKSVEVCLSSMGLELSAVGRVLDMYPKLLTANP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 CQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLG 240
           CQTTMLLVSSVE TLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLV KV+YFL 
Sbjct: 181 CQTTMLLVSSVERTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVRKVNYFLE 240

Query: 241 DMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           DM+GDLLELK FPQYFSFSLERKI PRHRSLV+HGLSLPLSKMLK
Sbjct: 241 DMKGDLLELKIFPQYFSFSLERKIKPRHRSLVQHGLSLPLSKMLK 283

[Close]

BLAST of ClCG05G024170 vs. NCBI nr
Match: XP_008446371.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] >KAA0034429.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK17705.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 502.7 bits (1293), Expect = 2.9e-138
Identity = 256/286 (89.51%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1   MIIRLQLPPP-CFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKI 60
           MI RLQLPPP CF+F FP S   SLKPL+NP+F KPRF LSLNTQFSD SDSG+LFREKI
Sbjct: 1   MISRLQLPPPSCFIFFFPPSLAGSLKPLKNPSFGKPRFTLSLNTQFSDRSDSGLLFREKI 60

Query: 61  LYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSN 120
           LYLENHLNVD RKAFRENPH RSA+LSTLKSVEVCLSSMGL+ SAVGRVLDMYPKLLTSN
Sbjct: 61  LYLENHLNVDSRKAFRENPHCRSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSN 120

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEVQIPFPDI KSIIRCPRILVSDLD QLRPALKFLRDLGFVGL AI
Sbjct: 121 PDYDIYPIFDFLLNEVQIPFPDIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 180

Query: 181 TCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFL 240
           TCQTT+LLVS+VEHTLLPKIQ+LESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKV+YFL
Sbjct: 181 TCQTTLLLVSNVEHTLLPKIQFLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFL 240

Query: 241 GDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           GDM+GDLLELKSFPQYFSF+LERKI PRHRSLVEHGLSLPLSKMLK
Sbjct: 241 GDMKGDLLELKSFPQYFSFNLERKIKPRHRSLVEHGLSLPLSKMLK 286

[Close]

BLAST of ClCG05G024170 vs. NCBI nr
Match: XP_022945324.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_022945325.1 transcription termination factor MTEF1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 494.2 bits (1271), Expect = 1.0e-135
Identity = 250/285 (87.72%), Postives = 267/285 (93.68%), Query Frame = 0


Query: 1   MIIRLQLPPPCFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKIL 60
           M+ R+Q  PP  LFLFPRSS PSL PLRNPNFRKPRF +SLN+QFSDHSD+G+LFR+KIL
Sbjct: 1   MMSRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNP 120
           YLENHLNVDFRKAFRENP SRSATLS +KSVEVCLSSMGLELSAVGRVLDMYP+LLTS+P
Sbjct: 61  YLENHLNVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 CQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLG 240
            QTT+LLVSSVEHTLLPKIQYLE+LGLSH+DVVNMVLRSP LLTYSIQNNLVPKV YFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           DM+GDL EL+ FPQYFSFSLERKI PRHR LVEHGLSL LSKMLK
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLK 285

[Close]

BLAST of ClCG05G024170 vs. NCBI nr
Match: KAG7013135.1 (Transcription termination factor MTEF1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 493.4 bits (1269), Expect = 1.7e-135
Identity = 250/285 (87.72%), Postives = 267/285 (93.68%), Query Frame = 0


Query: 1   MIIRLQLPPPCFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKIL 60
           MI R+Q  PP  LFLFPRSS PSL PLRNPNFRKPRF +SLN+QFSDHSD+G+LFR+KIL
Sbjct: 1   MISRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNP 120
           YLENHL+VDFRKAFRENP SRSATLS +KSVEVCLSSMGLELSAVGRVLDMYP+LLTS+P
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 CQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLG 240
            QTT+LLVSSVEHTLLPKIQYLE+LGLSH+DVVNMVLRSP LLTYSIQNNLVPKV YFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           DM+GDL EL+ FPQYFSFSLERKI PRHR LVEHGLSL LSKMLK
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLK 285

[Close]

BLAST of ClCG05G024170 vs. NCBI nr
Match: XP_022968085.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022968086.1 transcription termination factor MTEF1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 491.9 bits (1265), Expect = 5.0e-135
Identity = 248/285 (87.02%), Postives = 266/285 (93.33%), Query Frame = 0


Query: 1   MIIRLQLPPPCFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKIL 60
           MI R+Q  PPC  FLFPRSS PSL P+RNPNFRKPRF +SLN+QFSDHSD+G+ FR+KIL
Sbjct: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60

Query: 61  YLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNP 120
           YLENHL+VDFRKAFRENP SRSATLS +KSVEVCLSSMGLELSAVGRVLDMYP+LLTS+P
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 CQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLG 240
            QTT+LLVSSVEHTLLPKIQYLE+LGLSH+DVVNMVLRSP LLTYSIQNNLVPKV YFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           DM+GDL EL+ FPQYFSFSLERKI PRHR LVEHGLSL LSKMLK
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLK 285

[Close]

BLAST of ClCG05G024170 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 286.6 bits (732), Expect = 4.2e-76
Identity = 152/256 (59.38%), Postives = 192/256 (75.00%), Query Frame = 0


Query: 32  FRKPRF-ALSLNTQFSDHSDSGILFREKILYLENHLNVDFRKAFRENPHSRSATLSTLKS 91
           F  P F A+ +     + SD+GILFREK++YL++ LNVD  KA R NP  RSA +S++ S
Sbjct: 9   FPPPCFSAVRIRCFAGETSDTGILFREKLIYLQD-LNVDPHKALRVNPSLRSAPISSVVS 68

Query: 92  VEVCLSSMGLELSAVGRVLDMYPKLLTSNPDYDLYPIFDFLLNEVQIPFPDIRKSIIRCP 151
           VE  LSS GL   AVGR+LDM+P LLTS+P+ ++ P+  FL NE+ I   DI KSI RCP
Sbjct: 69  VETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCP 128

Query: 152 RILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQYL-ESLGLSH 211
           R+L+S +D QLRPAL FL+ LGFVG + IT + T+LLVS+VE TL+PKI+YL E LG + 
Sbjct: 129 RLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTR 188

Query: 212 EDVVNMVLRSPGLLTYSIQNNLVPKVSYFLGDMEGDLLELKSFPQYFSFSLERKIMPRHR 271
           E+V  MV+RSP LLTYS+ NNLVPKV +F+ +M GD+ ELK FPQYFSFSLERKI PRHR
Sbjct: 189 EEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHR 248

Query: 272 SLVEHGLSLPLSKMLK 286
            L EHG+ +PLS+MLK
Sbjct: 249 LLKEHGILMPLSEMLK 263

[Close]

BLAST of ClCG05G024170 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-18
Identity = 60/209 (28.71%), Postives = 110/209 (52.63%), Query Frame = 0


Query: 69  DFRKAFRENPHSRSATL-STLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNPDYDLYPI 128
           D ++     P     T+ + LK+    L  +G+  S +G+++   P L + + +  L P 
Sbjct: 235 DIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPT 294

Query: 129 FDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFL-RDLGFVGLNAITC--QTT 188
             +L+ EV I   D+ K +   P+ILV  LD+       FL ++LG    + +    +  
Sbjct: 295 IRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHP 354

Query: 189 MLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLGDMEG 248
            LL  S++   LP+I +L S+G+ + D++ ++     +L+ S+++NL PK  Y + ++  
Sbjct: 355 QLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNN 414

Query: 249 DLLELKSFPQYFSFSLERKIMPRHRSLVE 274
           ++  L  +P Y S SL+++I PRHR LVE
Sbjct: 415 EVHILTKYPMYLSLSLDQRIRPRHRFLVE 443

[Close]

BLAST of ClCG05G024170 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-14
Identity = 59/190 (31.05%), Postives = 97/190 (51.05%), Query Frame = 0


Query: 98  MGLELSAVGRVLDMYPKLLTSNPDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDL 157
           +G+    + R+L + P L   + +  + P   F L E+ IP   I   +++ P +L + L
Sbjct: 398 LGIPKEGMKRILVVKPILYCIDLEKTIAPKVRF-LQEMGIPNEAIGNMLVKFPSLLTNSL 457

Query: 158 DLQLRPALKFLRDLGFV---GLNAITCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVN 217
             ++RP + FL     V    +  +      LL  S+   L P ++Y  SLG+    +  
Sbjct: 458 YKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGE 517

Query: 218 MVLRSPGLLTYSIQNNLVPKVSYFLGDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEH 277
           M+   P LL Y++ +NL PK  Y    M   L +L  FP++FS+SLER+I+PRH  +VE+
Sbjct: 518 MIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVEN 577

Query: 278 GLSLPLSKML 285
            ++  L  ML
Sbjct: 578 RVNFKLRYML 585

[Close]

BLAST of ClCG05G024170 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.6e-14
Identity = 55/198 (27.78%), Postives = 103/198 (52.02%), Query Frame = 0


Query: 88  LKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNPDYDLYPIFDFLLNEVQIPFPDIRKSII 147
           LK     L ++G++ +   +++  +P +LT +    L    +F L++  +    I + + 
Sbjct: 268 LKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQ-KLTSTVEF-LSQTGLTEEQIGRILT 327

Query: 148 RCPRILVSDLDLQLRPALKFLRDLGF-VGLNAITCQTTMLLVSSVEHTLLPKIQYLESLG 207
           RCP I+   ++ +LRP +++ R L   V +    C  T  L  S+E  L P  ++    G
Sbjct: 328 RCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGL--SIESNLKPVTEFFLEKG 387

Query: 208 LSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLGDMEGDLLELKSFPQYFSFSLERKIMP 267
              +++  M+ R   L T+S++ N++PK  YF   M+    EL  FPQ+F +SL+ +I P
Sbjct: 388 FGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKP 447

Query: 268 RHRSLVEHGLSLPLSKML 285
           R+  +   G+ L L+++L
Sbjct: 448 RYELVQRSGVRLLLNQVL 460

[Close]

BLAST of ClCG05G024170 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-06
Identity = 44/145 (30.34%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 128 FDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTM-- 187
           +D+L N V I    +   + RCP+IL   LD +L P ++ L  LG       +  T    
Sbjct: 45  WDYLSNIVGIQERKLPYIVSRCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPP 104

Query: 188 LLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYF--LG-DM 247
           +L  SVE  L P + + ++LG+    +  M+L +P L++YSI   L   VS+   LG D 
Sbjct: 105 ILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQ 164

Query: 248 EGDLLE-LKSFPQYFSFSLERKIMP 267
           +G + + L   P    +S+++++ P
Sbjct: 165 DGMIGKVLVKNPFLMGYSVDKRLRP 189

[Close]

BLAST of ClCG05G024170 vs. ExPASy TrEMBL
Match: A0A5D3D1U5 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00330 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 1.4e-138
Identity = 256/286 (89.51%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1   MIIRLQLPPP-CFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKI 60
           MI RLQLPPP CF+F FP S   SLKPL+NP+F KPRF LSLNTQFSD SDSG+LFREKI
Sbjct: 1   MISRLQLPPPSCFIFFFPPSLAGSLKPLKNPSFGKPRFTLSLNTQFSDRSDSGLLFREKI 60

Query: 61  LYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSN 120
           LYLENHLNVD RKAFRENPH RSA+LSTLKSVEVCLSSMGL+ SAVGRVLDMYPKLLTSN
Sbjct: 61  LYLENHLNVDSRKAFRENPHCRSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSN 120

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEVQIPFPDI KSIIRCPRILVSDLD QLRPALKFLRDLGFVGL AI
Sbjct: 121 PDYDIYPIFDFLLNEVQIPFPDIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 180

Query: 181 TCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFL 240
           TCQTT+LLVS+VEHTLLPKIQ+LESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKV+YFL
Sbjct: 181 TCQTTLLLVSNVEHTLLPKIQFLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFL 240

Query: 241 GDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           GDM+GDLLELKSFPQYFSF+LERKI PRHRSLVEHGLSLPLSKMLK
Sbjct: 241 GDMKGDLLELKSFPQYFSFNLERKIKPRHRSLVEHGLSLPLSKMLK 286

[Close]

BLAST of ClCG05G024170 vs. ExPASy TrEMBL
Match: A0A1S3BFK9 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489133 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 1.4e-138
Identity = 256/286 (89.51%), Postives = 269/286 (94.06%), Query Frame = 0


Query: 1   MIIRLQLPPP-CFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKI 60
           MI RLQLPPP CF+F FP S   SLKPL+NP+F KPRF LSLNTQFSD SDSG+LFREKI
Sbjct: 1   MISRLQLPPPSCFIFFFPPSLAGSLKPLKNPSFGKPRFTLSLNTQFSDRSDSGLLFREKI 60

Query: 61  LYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSN 120
           LYLENHLNVD RKAFRENPH RSA+LSTLKSVEVCLSSMGL+ SAVGRVLDMYPKLLTSN
Sbjct: 61  LYLENHLNVDSRKAFRENPHCRSASLSTLKSVEVCLSSMGLDRSAVGRVLDMYPKLLTSN 120

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEVQIPFPDI KSIIRCPRILVSDLD QLRPALKFLRDLGFVGL AI
Sbjct: 121 PDYDIYPIFDFLLNEVQIPFPDIHKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 180

Query: 181 TCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFL 240
           TCQTT+LLVS+VEHTLLPKIQ+LESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKV+YFL
Sbjct: 181 TCQTTLLLVSNVEHTLLPKIQFLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVNYFL 240

Query: 241 GDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           GDM+GDLLELKSFPQYFSF+LERKI PRHRSLVEHGLSLPLSKMLK
Sbjct: 241 GDMKGDLLELKSFPQYFSFNLERKIKPRHRSLVEHGLSLPLSKMLK 286

[Close]

BLAST of ClCG05G024170 vs. ExPASy TrEMBL
Match: A0A6J1G0M2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449597 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 4.9e-136
Identity = 250/285 (87.72%), Postives = 267/285 (93.68%), Query Frame = 0


Query: 1   MIIRLQLPPPCFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKIL 60
           M+ R+Q  PP  LFLFPRSS PSL PLRNPNFRKPRF +SLN+QFSDHSD+G+LFR+KIL
Sbjct: 1   MMSRVQNLPPWNLFLFPRSSAPSLNPLRNPNFRKPRFTISLNSQFSDHSDAGLLFRQKIL 60

Query: 61  YLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNP 120
           YLENHLNVDFRKAFRENP SRSATLS +KSVEVCLSSMGLELSAVGRVLDMYP+LLTS+P
Sbjct: 61  YLENHLNVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 CQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLG 240
            QTT+LLVSSVEHTLLPKIQYLE+LGLSH+DVVNMVLRSP LLTYSIQNNLVPKV YFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           DM+GDL EL+ FPQYFSFSLERKI PRHR LVEHGLSL LSKMLK
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLK 285

[Close]

BLAST of ClCG05G024170 vs. ExPASy TrEMBL
Match: A0A6J1HTW2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467425 PE=3 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 2.4e-135
Identity = 248/285 (87.02%), Postives = 266/285 (93.33%), Query Frame = 0


Query: 1   MIIRLQLPPPCFLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKIL 60
           MI R+Q  PPC  FLFPRSS PSL P+RNPNFRKPRF +SLN+QFSDHSD+G+ FR+KIL
Sbjct: 1   MISRVQNLPPCNRFLFPRSSTPSLNPMRNPNFRKPRFTISLNSQFSDHSDAGLHFRQKIL 60

Query: 61  YLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNP 120
           YLENHL+VDFRKAFRENP SRSATLS +KSVEVCLSSMGLELSAVGRVLDMYP+LLTS+P
Sbjct: 61  YLENHLHVDFRKAFRENPDSRSATLSAVKSVEVCLSSMGLELSAVGRVLDMYPQLLTSDP 120

Query: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAIT 180
           DYDLYPIFDFLLNEVQIPFPDIRKSI+RCPR+LVSDLDLQLRPALKFLRDLGFVGLNAIT
Sbjct: 121 DYDLYPIFDFLLNEVQIPFPDIRKSIVRCPRLLVSDLDLQLRPALKFLRDLGFVGLNAIT 180

Query: 181 CQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLG 240
            QTT+LLVSSVEHTLLPKIQYLE+LGLSH+DVVNMVLRSP LLTYSIQNNLVPKV YFLG
Sbjct: 181 SQTTLLLVSSVEHTLLPKIQYLENLGLSHKDVVNMVLRSPALLTYSIQNNLVPKVDYFLG 240

Query: 241 DMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLK 286
           DM+GDL EL+ FPQYFSFSLERKI PRHR LVEHGLSL LSKMLK
Sbjct: 241 DMKGDLSELRRFPQYFSFSLERKIKPRHRLLVEHGLSLSLSKMLK 285

[Close]

BLAST of ClCG05G024170 vs. ExPASy TrEMBL
Match: A0A0A0KW02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605740 PE=3 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 1.0e-133
Identity = 252/287 (87.80%), Postives = 263/287 (91.64%), Query Frame = 0


Query: 1   MIIRLQLPPPC-FLFLFPRSSVPSLKPLRNPNFRKPRFALSLNTQFSDHSDSGILFREKI 60
           MI RL LPP   F F FP S   SLKPL NP+FRKPRF LSL+TQFSD  DSG+LFREKI
Sbjct: 32  MISRLPLPPSSFFFFFFPPSLAGSLKPLTNPSFRKPRFTLSLDTQFSDRFDSGLLFREKI 91

Query: 61  LYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSN 120
           LYLENHLNVD RKAFRENPH RSATLSTLKSVEVCLSSMGL+ SAV RVLDM+PKLLTSN
Sbjct: 92  LYLENHLNVDSRKAFRENPHCRSATLSTLKSVEVCLSSMGLDRSAVSRVLDMHPKLLTSN 151

Query: 121 PDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAI 180
           PDYD+YPIFDFLLNEV+IPFPDIRKSIIRCPRILVSDLD QLRPALKFLRDLGFVGL AI
Sbjct: 152 PDYDIYPIFDFLLNEVEIPFPDIRKSIIRCPRILVSDLDHQLRPALKFLRDLGFVGLKAI 211

Query: 181 TCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFL 240
           TCQTT+LLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFL
Sbjct: 212 TCQTTLLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFL 271

Query: 241 GDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLKS 287
           GDM+GDLLELK FPQYFSF+LERKI  RHRSLVEHGLSLPLSKMLK+
Sbjct: 272 GDMKGDLLELKRFPQYFSFNLERKIKLRHRSLVEHGLSLPLSKMLKA 318

[Close]

BLAST of ClCG05G024170 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 286.6 bits (732), Expect = 3.0e-77
Identity = 152/256 (59.38%), Postives = 192/256 (75.00%), Query Frame = 0


Query: 32  FRKPRF-ALSLNTQFSDHSDSGILFREKILYLENHLNVDFRKAFRENPHSRSATLSTLKS 91
           F  P F A+ +     + SD+GILFREK++YL++ LNVD  KA R NP  RSA +S++ S
Sbjct: 8   FPPPCFSAVRIRCFAGETSDTGILFREKLIYLQD-LNVDPHKALRVNPSLRSAPISSVVS 67

Query: 92  VEVCLSSMGLELSAVGRVLDMYPKLLTSNPDYDLYPIFDFLLNEVQIPFPDIRKSIIRCP 151
           VE  LSS GL   AVGR+LDM+P LLTS+P+ ++ P+  FL NE+ I   DI KSI RCP
Sbjct: 68  VETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCP 127

Query: 152 RILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQYL-ESLGLSH 211
           R+L+S +D QLRPAL FL+ LGFVG + IT + T+LLVS+VE TL+PKI+YL E LG + 
Sbjct: 128 RLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTR 187

Query: 212 EDVVNMVLRSPGLLTYSIQNNLVPKVSYFLGDMEGDLLELKSFPQYFSFSLERKIMPRHR 271
           E+V  MV+RSP LLTYS+ NNLVPKV +F+ +M GD+ ELK FPQYFSFSLERKI PRHR
Sbjct: 188 EEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHR 247

Query: 272 SLVEHGLSLPLSKMLK 286
            L EHG+ +PLS+MLK
Sbjct: 248 LLKEHGILMPLSEMLK 262

[Close]

BLAST of ClCG05G024170 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 211.8 bits (538), Expect = 9.4e-55
Identity = 112/231 (48.48%), Postives = 159/231 (68.83%), Query Frame = 0


Query: 56  REKILYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSSMGLELSAVGRVLDMYPKL 115
           +EKIL LE  + +D  KA   NP   SA L +++SV   L S G+  + + R+L M PK+
Sbjct: 56  KEKILCLE-LMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKI 115

Query: 116 LTSNPDYDLYPIFDFLLNEVQIPFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGFVG 175
           LTS+   +LYP+F FL N++ +P    R+ I +CPR+L+S ++ QL+PAL +L+ LG   
Sbjct: 116 LTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKD 175

Query: 176 LNAITCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKV 235
           L A+  Q  +LLVSSVEHTL+PK+++LES+G S  + + M+LR P L T+SI+NN  PK+
Sbjct: 176 LEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKL 235

Query: 236 SYFLGDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLKS 287
            YF+ +++G L  LK FPQYF+FSLE++I PRH   +E GL LPLS MLKS
Sbjct: 236 DYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKS 285

[Close]

BLAST of ClCG05G024170 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 143.3 bits (360), Expect = 4.1e-34
Identity = 89/233 (38.20%), Postives = 130/233 (55.79%), Query Frame = 0


Query: 57  EKILYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSS--MGLELSAVGRVLDMYPK 116
           EK++YL++ L +DF      +P   S  LS ++SV   +++  +   L    R++ M P+
Sbjct: 75  EKLIYLDS-LGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPE 134

Query: 117 LLTSNPDYDLYPIFDFLLNEVQI-PFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGF 176
           LLTS       P+  FLL EV +    D+R+++ R PR+L   +D QLRP L FL+ +G 
Sbjct: 135 LLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGI 194

Query: 177 VGLNAITCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVP 236
           +  +    + T LL  SV++ L+P+I Y E LG S      M  R P L  YSI  N  P
Sbjct: 195 LDPH----KHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEP 254

Query: 237 KVSYFLGDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLKS 287
           K+ Y + +M  D+ E+  FPQYFSFSLE +I PRH +    G+  PL  MLK+
Sbjct: 255 KLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKT 302

[Close]

BLAST of ClCG05G024170 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 143.3 bits (360), Expect = 4.1e-34
Identity = 89/233 (38.20%), Postives = 130/233 (55.79%), Query Frame = 0


Query: 57  EKILYLENHLNVDFRKAFRENPHSRSATLSTLKSVEVCLSS--MGLELSAVGRVLDMYPK 116
           EK++YL++ L +DF      +P   S  LS ++SV   +++  +   L    R++ M P+
Sbjct: 75  EKLIYLDS-LGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCPE 134

Query: 117 LLTSNPDYDLYPIFDFLLNEVQI-PFPDIRKSIIRCPRILVSDLDLQLRPALKFLRDLGF 176
           LLTS       P+  FLL EV +    D+R+++ R PR+L   +D QLRP L FL+ +G 
Sbjct: 135 LLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGI 194

Query: 177 VGLNAITCQTTMLLVSSVEHTLLPKIQYLESLGLSHEDVVNMVLRSPGLLTYSIQNNLVP 236
           +  +    + T LL  SV++ L+P+I Y E LG S      M  R P L  YSI  N  P
Sbjct: 195 LDPH----KHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENYEP 254

Query: 237 KVSYFLGDMEGDLLELKSFPQYFSFSLERKIMPRHRSLVEHGLSLPLSKMLKS 287
           K+ Y + +M  D+ E+  FPQYFSFSLE +I PRH +    G+  PL  MLK+
Sbjct: 255 KLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKT 302

[Close]

BLAST of ClCG05G024170 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-29
Identity = 76/201 (37.81%), Postives = 116/201 (57.71%), Query Frame = 0


Query: 85  LSTLKSVEVCLSSMGLELSAVGRVLDMYPKLLTSNPDYD-LYPIFDFLLNEVQIPFPDIR 144
           LS + S    L S G+      R++ + P+L +   D   L P+FDFL  E+     + R
Sbjct: 62  LSVILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESR 121

Query: 145 KSIIRCPRILVSDLDLQLRPALKFLRDLGFVGLNAITCQTTMLLVSSVEHTLLPKIQYLE 204
             I+ CP IL SD++  LRP L +L++LG   LN  +     +L + VE  L  K+++L+
Sbjct: 122 GLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVE-KLRAKMRFLK 181

Query: 205 SLGLSHEDVVNMVLRSPGLLTYSIQNNLVPKVSYFLGDMEGDLLELKSFPQYFSFSLERK 264
           S+G  HE+   +  R P +  YS+++NL PK  + + DME +L ELK FPQYF+FSL ++
Sbjct: 182 SIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKR 241

Query: 265 IMPRHRSLVEHGLSLPLSKML 285
           I PRH  L +  + + LS+ML
Sbjct: 242 IRPRHWHLKKKNVRVSLSRML 261

The following BLAST results are available for this feature:

BLAST of ClCG05G024170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892906.1	1.9e-142	92.98	transcription termination factor MTEF1, chloroplastic [Benincasa hispida] >XP_03...	[more]
XP_008446371.1	2.9e-138	89.51	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] ...	[more]
XP_022945324.1	1.0e-135	87.72	transcription termination factor MTEF1, chloroplastic [Cucurbita moschata] >XP_0...	[more]
KAG7013135.1	1.7e-135	87.72	Transcription termination factor MTEF1, chloroplastic [Cucurbita argyrosperma su...	[more]
XP_022968085.1	5.0e-135	87.02	transcription termination factor MTEF1, chloroplastic [Cucurbita maxima] >XP_022...	[more]

BLAST of ClCG05G024170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	4.2e-76	59.38	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9FM80	1.4e-18	28.71	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	3.5e-14	31.05	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4JVI3	4.6e-14	27.78	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9SZL6	2.1e-06	30.34	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]

BLAST of ClCG05G024170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D1U5	1.4e-138	89.51	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BFK9	1.4e-138	89.51	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1G0M2	4.9e-136	87.72	transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3...	[more]
A0A6J1HTW2	2.4e-135	87.02	transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366...	[more]
A0A0A0KW02	1.0e-133	87.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605740 PE=3 SV=1	[more]

BLAST of ClCG05G024170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03050.1	3.0e-77	59.38	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	9.4e-55	48.48	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	4.1e-34	38.20	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	4.1e-34	38.20	Mitochondrial transcription termination factor family protein	[more]
AT3G18870.1	1.8e-29	37.81	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 143..174 e-value: 9.6E-4 score: 28.4 coord: 246..277 e-value: 0.002 score: 27.4 coord: 106..138 e-value: 25.0 score: 13.8 coord: 213..245 e-value: 0.048 score: 22.8 coord: 177..208 e-value: 0.54 score: 19.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 141..285 e-value: 4.6E-26 score: 91.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 37..286
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 55..290 e-value: 4.6E-41 score: 142.7
None	No IPR available	PANTHER	PTHR13068:SF36	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	coord: 37..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G024170.1	ClCG05G024170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding