ClCG05G024060 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G024060
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	50S ribosomal protein L32, chloroplastic
Location	CG_Chr05: 35744290 .. 35745970 (-)
RNA-Seq Expression	ClCG05G024060
Synteny	ClCG05G024060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGGCTTTGGGCTCTTGGGCCGAACAAAGGGATCCAAGCCCGTCACCAAGCCATTGGCCCAGCTCAATGTGCAAACGACGCCGTCGAGTACGCGCTGGGGTTGGGGCATTTGCAAATTCCTAAACCCCGTCGTCTTCTTCGTCTGATTTCCACCGCCGGTGTACTGAAATCAGCACTAGCACTTGCTCGCAGCTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTAATGCTTTACCCCATTCTTCGCCGATTTCTGGGATCGTGGACCGTAAGGACTCCACACCCCTGCTTGTTCTTCCGGATTTTAACCAGGAATCTGATAAAGATAGAACCAACAACTGCAGTATTGGGGGGTTTGGTTTCCCTAGCTTGTCTTTTTCAGCGTCCATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTATTGAATTTCCTCCTCATATTTTCAAATAATCAAACGCGGAGAAAGCCTGTTGTTCGATTAGAAACTTAAATTGTTTGTTTCTTATGGATTAAGTAGAAACTTATAATTTCGCATCGCTTGAAGTTGTTGGGATGTGTAAGATGTTGCTGGAAGTATTAGAAATGAACTTGAAAACATTTGTAAAATGTAGTAACAAAGCAAGAAATTTAGAGGTGTAAGATGACGGCTAAATTGGACCTTAGATATTCATCTTTATATGTTTGGTCAATGTGCTCAATATCATATGGTACTTGGTAGTAGTGACTGTTTCTCAATGCATTAAGCACTGTGAAGATTGTATGGTTTTAGAGTCATTAGATTTTCTATTAGACTTCAAATTCTTATATATATGTTTGGAGCATTTCTTTAGGTTTCCAAAGTTCCTTTTCTAAAACTTGTTCTTGTTTGGATCTATTGAGAAATATGAGAAAACAATTCATAGTCTATGTTTTGCAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGGTGCAAGTAAGATTCTCCCTGGTCTGCCCTAACAAATCTGTTTAATGTTGATTTTAGCTTATAGGAAAGTTAGTCTGGAGTCCACTGATAGTGATAATGAAACATGATCTGTATTGTTATTGTATACATTAACATATCATCATTCGGAAGCTGTTTCTTCACAAATAACAAACAATACAACAAGCTCCAATAAATGCCATCGAAACAATAGCGGAATATTAAGCCCTCCAATAACCAAAACAATGGATCTTCTCTAGTTACTTGTTAGTGATTGAGGCAAAGCTTTTAGACTTTAGAGAAAAATGGTATTCACGATAAGTCTTTCAAGTAAAGAAAAAATGGAATCGGTTGGTGTCAAGAATGAGAATGACAAGGATGCCAATCGACTCTGCTAGCCAAAATTTCAATATCTTTCACTTCATTGGATAAGAAACGAGCATCATGAAATGTAGCAATAAGAATATTTCTGATAGCATAAATTGTTTAGAGGAAAGTTAGCCTCAGCCCATAATTTTGTGATAATGTTAAGTGGCTATAGTCTTCAAGGATTATCTTGGTGCTGACTGTGTTATTGCAGGAGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGGCCAGGGGAGCAGAATAACTCAGCCAGATGA

mRNA sequence

ATGCCGGGCTTTGGGCTCTTGGGCCGAACAAAGGGATCCAAGCCCGTCACCAAGCCATTGGCCCAGCTCAATGTGCAAACGACGCCGTCGACTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTAATGCTTTACCCCATTCTTCGCCGATTTCTGGGATCGTGGACCGTAAGGACTCCACACCCCTGCTTGTTCTTCCGGATTTTAACCAGGAATCTGATAAAGATAGAACCAACAACTGCAGTATTGGGGGGTTTGGTTTCCCTAGCTTGTCTTTTTCAGCGTCCATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGGTGCAAGAGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGGCCAGGGGAGCAGAATAACTCAGCCAGATGA

Coding sequence (CDS)

ATGCCGGGCTTTGGGCTCTTGGGCCGAACAAAGGGATCCAAGCCCGTCACCAAGCCATTGGCCCAGCTCAATGTGCAAACGACGCCGTCGACTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTAATGCTTTACCCCATTCTTCGCCGATTTCTGGGATCGTGGACCGTAAGGACTCCACACCCCTGCTTGTTCTTCCGGATTTTAACCAGGAATCTGATAAAGATAGAACCAACAACTGCAGTATTGGGGGGTTTGGTTTCCCTAGCTTGTCTTTTTCAGCGTCCATGGAGCTCATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGGTGCAAGAGTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGGCCAGGGGAGCAGAATAACTCAGCCAGATGA

Protein sequence

MPGFGLLGRTKGSKPVTKPLAQLNVQTTPSTMALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTNNCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLPHYYCCSGRPGEQNNSAR

Homology

[Close]

BLAST of ClCG05G024060 vs. NCBI nr
Match: XP_038891873.1 (uncharacterized protein LOC120081238 [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 8.6e-63
Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRI+RALE QTGSMLGLK MANALPHSSPISGI+DRKDSTP LVLP+FNQESDKDR N
Sbjct: 1   MALRIVRALEAQTGSMLGLKGMANALPHSSPISGILDRKDSTPPLVLPEFNQESDKDRIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI G GFP+LSFS SMELMAVPKKKVSP+KRGIRNGPKALKPIPVIVRCKSCGKVKLP
Sbjct: 61  NCSIMGSGFPTLSFSGSMELMAVPKKKVSPYKRGIRNGPKALKPIPVIVRCKSCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSAR 169
           HYYCCSGR GEQ+NSAR
Sbjct: 121 HYYCCSGRTGEQDNSAR 137

[Close]

BLAST of ClCG05G024060 vs. NCBI nr
Match: XP_023541204.1 (uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-60
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRI+RA+EGQTGSM GLKAM   LPHSSPISGI+DRKDS P LVLP+FN ESD+DR N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPISGIMDRKDSAPPLVLPEFNHESDRDRIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSLSFS SMELMAVPK+K SPHKRGIRNGPKALKPIPVI+RCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSAR 169
           H+YCCSGR GEQ+NSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of ClCG05G024060 vs. NCBI nr
Match: XP_022968104.1 (uncharacterized protein LOC111467436 [Cucurbita maxima])

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-60
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRI+RA+EGQTGSM GLKAMA  LPHSSPISGI+D KDS P LVLP+FN ESD+D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSLSFS SMELMAVPK+KVSPHKRGIRNGPKALKPIPVI+RCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSAR 169
           H+YCCSGR GEQ+NSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of ClCG05G024060 vs. NCBI nr
Match: XP_022945635.1 (uncharacterized protein LOC111449817 [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 6.8e-60
Identity = 115/137 (83.94%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRI+RA+EGQTGSM GLKAMAN LPHSSPI+GI+ RKDS P LVLP+FN ESD+D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMANVLPHSSPITGIIYRKDSAPPLVLPEFNHESDRDGIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSLSFS SMELMAVPK+K SPHKRGIRNGPKALKPIPVI+RCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSAR 169
           H+YCCSGR GEQ+NSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of ClCG05G024060 vs. NCBI nr
Match: KAG6574067.1 (hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.1 bits (614), Expect = 6.8e-60
Identity = 115/137 (83.94%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRI+RA+EGQTGSM GLKAM   LPHSSPISGI+DRKDS P LVLP+FN ESD+D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPISGIMDRKDSAPPLVLPEFNHESDRDGIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSLSFS SMELMAVPK+K SPHKRGIRNGPKALKPIPVI+RCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSAR 169
           H+YCCSGR GEQ+NSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of ClCG05G024060 vs. ExPASy Swiss-Prot
Match: Q2N923 (50S ribosomal protein L32 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rpmF PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-05
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 112 MAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLPHYYC 156
           MAVPK+KVSPH+RG R    +LK +     C +CG++K PH  C
Sbjct: 1   MAVPKRKVSPHRRGNRRAHDSLK-VEAFHECNNCGELKRPHNMC 43

[Close]

BLAST of ClCG05G024060 vs. ExPASy Swiss-Prot
Match: Q1GT88 (50S ribosomal protein L32 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=rpmF PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 112 MAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLPHYYC 156
           MAVPK+K SP KRG+R    +LK +     C +CG++K PH  C
Sbjct: 1   MAVPKRKTSPSKRGMRRSHDSLK-VEAFQECPNCGELKRPHNLC 43

[Close]

BLAST of ClCG05G024060 vs. ExPASy Swiss-Prot
Match: Q0BTE2 (50S ribosomal protein L32 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=rpmF PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.2e-04
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 112 MAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLPHYYC 156
           MAVPKKK SP +RG+R   +AL        C +CG++K PH+ C
Sbjct: 1   MAVPKKKTSPSRRGMRRSHQALTG-EAYTECSNCGELKRPHHVC 43

[Close]

BLAST of ClCG05G024060 vs. ExPASy Swiss-Prot
Match: Q5FUN5 (50S ribosomal protein L32 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpmF PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.4e-04
Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 112 MAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLPHYYC 156
           MAVPK+K +P +RG+R   +AL  +     C +CG++K PH+ C
Sbjct: 1   MAVPKRKTTPSRRGMRRSHQAL-GVEAHAECSNCGEMKRPHHVC 43

[Close]

BLAST of ClCG05G024060 vs. ExPASy TrEMBL
Match: A0A6J1HYN6 (50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467436 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRI+RA+EGQTGSM GLKAMA  LPHSSPISGI+D KDS P LVLP+FN ESD+D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSLSFS SMELMAVPK+KVSPHKRGIRNGPKALKPIPVI+RCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSAR 169
           H+YCCSGR GEQ+NSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of ClCG05G024060 vs. ExPASy TrEMBL
Match: A0A6J1G1I2 (50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449817 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 115/137 (83.94%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRI+RA+EGQTGSM GLKAMAN LPHSSPI+GI+ RKDS P LVLP+FN ESD+D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMANVLPHSSPITGIIYRKDSAPPLVLPEFNHESDRDGIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSLSFS SMELMAVPK+K SPHKRGIRNGPKALKPIPVI+RCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSAR 169
           H+YCCSGR GEQ+NSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of ClCG05G024060 vs. ExPASy TrEMBL
Match: A0A0A0KQP7 (50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606360 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.6e-59
Identity = 116/136 (85.29%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRIMRALEGQ GSMLGLKAMA  LPHSSPISG++  KDS P LVLP+FNQE D D+TN
Sbjct: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSLSFS SMELMAVPKKKVSPHKR IRN PKALKPIPVIVRCK+CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSA 168
           HYYCCSGRPG+Q+NSA
Sbjct: 121 HYYCCSGRPGDQDNSA 136

[Close]

BLAST of ClCG05G024060 vs. ExPASy TrEMBL
Match: A0A6J1DBR3 (50S ribosomal protein L32, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019232 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.4e-58
Identity = 116/140 (82.86%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRIMRA+EGQT SMLGLKAMAN LPH SP+SGI+DRKDSTP LVLP+FN ESD DR  
Sbjct: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCS  GFGFPSLSFS SMELMAVPK+KVSPHKRGIRNGPKALKPIPVI+RCKSCGKVKLP
Sbjct: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 152 HYYCCS---GRPGEQNNSAR 169
           H+YCCS   GR GEQ+NS R
Sbjct: 121 HFYCCSGDRGRTGEQDNSTR 140

[Close]

BLAST of ClCG05G024060 vs. ExPASy TrEMBL
Match: A0A5A7SYB6 (50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00190 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56
Identity = 114/136 (83.82%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 32  MALRIMRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDRTN 91
           MALRIMRALEGQTGSMLGLKAMA  LPHSS   G++  KDS P LVLP+FNQESD+DR N
Sbjct: 1   MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRIN 60

Query: 92  NCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLP 151
           NCSI GFGFPSL FS SMELMAVPKKKVSPHKR IRN PKALKPIPVI+RCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLYFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLP 120

Query: 152 HYYCCSGRPGEQNNSA 168
           HYYCCSGRPGEQ+NSA
Sbjct: 121 HYYCCSGRPGEQDNSA 134

[Close]

BLAST of ClCG05G024060 vs. TAIR 10
Match: AT1G26740.1 (Ribosomal L32p protein family )

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 32  MALRI--MRALEGQTGSMLGLKAMANALPHSSPISGIVDRKDSTPLLVLPDFNQESDKDR 91
           MALR+  ++    ++  +L  +++++     SP++G  DR  S P LVLP+F+Q  ++  
Sbjct: 1   MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEFDQ--NQPG 60

Query: 92  TNNCSIGGFGFPSLSFSASMELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVK 151
                  GFG PS +F+ SMELMAVPKKK+S HKRGIRNGPKALKP+PVI+RC+SCG+VK
Sbjct: 61  LIEEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVK 120

Query: 152 LPHYYCCSG 159
           LPH++CCSG
Sbjct: 121 LPHFFCCSG 127

[Close]

BLAST of ClCG05G024060 vs. TAIR 10
Match: AT1G69485.1 (Ribosomal L32p protein family )

HSP 1 Score: 105.1 bits (261), Expect = 5.4e-23
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 109 MELMAVPKKKVSPHKRGIRNGPKALKPIPVIVRCKSCGKVKLPHYYCCSGR---PGEQNN 167
           MELMAVPKKK+S HKRGIRNGPKA KP PVI+RC+SCG+VKLPH+YCCSG    P EQ+N
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGERAIPDEQSN 60

The following BLAST results are available for this feature:

BLAST of ClCG05G024060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891873.1	8.6e-63	89.78	uncharacterized protein LOC120081238 [Benincasa hispida]	[more]
XP_023541204.1	1.0e-60	84.67	uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]	[more]
XP_022968104.1	3.1e-60	84.67	uncharacterized protein LOC111467436 [Cucurbita maxima]	[more]
XP_022945635.1	6.8e-60	83.94	uncharacterized protein LOC111449817 [Cucurbita moschata]	[more]
KAG6574067.1	6.8e-60	83.94	hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG05G024060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2N923	6.5e-05	50.00	50S ribosomal protein L32 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225...	[more]
Q1GT88	3.2e-04	47.73	50S ribosomal protein L32 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 188...	[more]
Q0BTE2	4.2e-04	47.73	50S ribosomal protein L32 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / ...	[more]
Q5FUN5	9.4e-04	43.18	50S ribosomal protein L32 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rp...	[more]

BLAST of ClCG05G024060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYN6	1.5e-60	84.67	50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G1I2	3.3e-60	83.94	50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0KQP7	3.6e-59	85.29	50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606...	[more]
A0A6J1DBR3	2.4e-58	82.86	50S ribosomal protein L32, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7SYB6	1.7e-56	83.82	50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of ClCG05G024060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26740.1	1.9e-31	51.94	Ribosomal L32p protein family	[more]
AT1G69485.1	5.4e-23	77.05	Ribosomal L32p protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002677	Ribosomal protein L32p	PFAM	PF01783	Ribosomal_L32p	coord: 113..157 e-value: 1.2E-10 score: 41.5
IPR002677	Ribosomal protein L32p	TIGRFAM	TIGR01031	TIGR01031	coord: 113..155 e-value: 8.8E-9 score: 33.5
None	No IPR available	PANTHER	PTHR21026:SF5	BNACNNG33200D PROTEIN	coord: 51..159
None	No IPR available	PANTHER	PTHR21026	39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL	coord: 51..159
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 111..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G024060.2	ClCG05G024060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome