ClCG05G022860 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G022860
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Homologous-pairing protein 2 homolog
Location	CG_Chr05: 34720160 .. 34722021 (-)
RNA-Seq Expression	ClCG05G022860
Synteny	ClCG05G022860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGAAGAAGCAAGGGAAAGCACTTGGCAAAAGTTCCCGCCCATTTCTCTGCACTCCGCCCCATCTATGGCTCCCAAATCCGATAGCGCAGAAGGTGAACACTCGCATCGATCTTTTGAACTGTTGCCCATATGATTAAAAATTATAATTTTGATTTCAATTTCTTATTTACGATGTCTTCAACGTAGAATTAAATCCTTCATTCGTTTCTAAATTTCCAGCGATCGTGCTCAACTTCGTGAATGAGGTATTTGTTTCATCACTGTGCTTCACTGATTTCTTTGTTCATCCATTAACCGTATGCATTCCGATTCACTGGTTTACTTGGTAGTATTCAAGCGCGTGTAGTTTCGTTTTCCCTCTTCTGCGCTTACTGCAGAGAAGATTGCAATGTTTTACGCTGTGTTGTACTTATATCTTCCTCTTGTTTAGATGTAACCCTAATTTGTACATTGAAGAGCTTACTTTCTTCCTCGATCGAGTGTTGGGTAAACAAACACTGTTTAGAACTCGTGTTATTTTCTCCTGGAGCAATTTGTTTCGGTGGATCTCCATTTCGCTGTTTCGCGCATTTGTAATTTCATTATGAAACTCCCATGCAGCGATCCTATCATTTTTTGCTATTTGGTGAGGTTTTTTGTGCTATTCTGTTAACGGCATTTGCCGCATTTTTTGTTCTGTTCAGCAAAATCGTCCACTGAACTCTCAAAATGCTGCTGATTCATTACAAAAGTTCAACCTCAAGAAAACGGCGGTGCAGAAGGCACTGGATGCCCTCGCCGATAGTGGACGGATTTCTTTCAAGGAGTATGGCAAGCAGAAGATATATATCGCTCGGCAAGACCAATTCCAGATCCCCAACAGCGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGCAACATCTAGACGAGCATAAAAAGGCTATTAGCCAGGTTGAGGAAGGTAATGACACTTGTGAATTTCAAAGAAGTCCTCAATAATGTAAATGTTATGATTCACTTGGGCCTTTGGCAATTACGGTATTCAAATTTCGAGAAATGAAAATGATAGAGGTATGGCCTTTTGAAACAGAAATCCGAATGTTGCAGTCAAACTTAACGCTGGAACAGATGCGGGAAAAGGAAGCTATGCTCAGAAAGGAGGTAGATAGATGCAAATCAGATATCTGTAACTTTACATCATTCTGATTAGTGATTGTGTTACCCTCTTTATCTGTTGTTAATGTCTGAAAAAGTAGCTCGTTTGATAAATGCTTGTAAGGTTAAGGAATTGGAAGACAAATTGGAAGTATTGCGCGGAGGTGTAGCGTTGGTGAGTTCAGAAGACCGCAAAGCAATTGAGCAGATATACTCTGAGAAATTAAGCCAGTGGCGAAAACGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAACTCCCCCAAGGATCTAAAAGAATTTAAGGTTCTGTCTGGTTATTTTGCCATGCCCCGTTTCTACTCAAGTTGTTTAGATTAATTACTTTGTATTCTTGCAGGAAGAACTTGGCATTGAGTACGATGAAGATGTGGGCGTGAATTTGCAGTCATTTAGTGACATGTTACCACAAAATCGAAAAAGGCCCCGGGGAAAGTGAGTGATACCATAAACTGGGGGGCCCAACTGTAGTAAGTAAGAGCAGAATTATTTGCTTATATTACTTTTCTTTATTCAATCCGTGCTTAAAGGCAAATACAAGTAGATTCTGTCTGCCTAGAGCTTGGCTTTTGTATCACGAATACTTATCAAGTTGCTTTTCATTGATTCATGCAAAGTTGAAGGCACCATTTATTTACCATAATGCTGAGTAAAGAAACTGCCGTCCTT

mRNA sequence

CCTGAAGAAGCAAGGGAAAGCACTTGGCAAAAGTTCCCGCCCATTTCTCTGCACTCCGCCCCATCTATGGCTCCCAAATCCGATAGCGCAGAAGAATTAAATCCTTCATTCGTTTCTAAATTTCCAGCGATCGTGCTCAACTTCGTGAATGAGGTATTTGTTTCATCACTGTGCTTCACTGATTTCTTTGTTCATCCATTAACCCAAAATCGTCCACTGAACTCTCAAAATGCTGCTGATTCATTACAAAAGTTCAACCTCAAGAAAACGGCGGTGCAGAAGGCACTGGATGCCCTCGCCGATAGTGGACGGATTTCTTTCAAGGAGTATGGCAAGCAGAAGATATATATCGCTCGGCAAGACCAATTCCAGATCCCCAACAGCGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGCAACATCTAGACGAGCATAAAAAGGCTATTAGCCAGGTTGAGGAAGTCAAACTTAACGCTGGAACAGATGCGGGAAAAGGAAGCTATGCTCAGAAAGGAGTAGCTCGTTTGATAAATGCTTGTAAGGTTAAGGAATTGGAAGACAAATTGGAAGTATTGCGCGGAGGTGTAGCGTTGGTGAGTTCAGAAGACCGCAAAGCAATTGAGCAGATATACTCTGAGAAATTAAGCCAGTGGCGAAAACGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAACTCCCCCAAGGATCTAAAAGAATTTAAGGAAGAACTTGGCATTGAGTACGATGAAGATGTGGGCGTGAATTTGCAGTCATTTAGTGACATGTTACCACAAAATCGAAAAAGGCCCCGGGGAAAGTGAGTGATACCATAAACTGGGGGGCCCAACTGTAGTAAGTAAGAGCAGAATTATTTGCTTATATTACTTTTCTTTATTCAATCCGTGCTTAAAGGCAAATACAAGTAGATTCTGTCTGCCTAGAGCTTGGCTTTTGTATCACGAATACTTATCAAGTTGCTTTTCATTGATTCATGCAAAGTTGAAGGCACCATTTATTTACCATAATGCTGAGTAAAGAAACTGCCGTCCTT

Coding sequence (CDS)

ATGGCTCCCAAATCCGATAGCGCAGAAGAATTAAATCCTTCATTCGTTTCTAAATTTCCAGCGATCGTGCTCAACTTCGTGAATGAGGTATTTGTTTCATCACTGTGCTTCACTGATTTCTTTGTTCATCCATTAACCCAAAATCGTCCACTGAACTCTCAAAATGCTGCTGATTCATTACAAAAGTTCAACCTCAAGAAAACGGCGGTGCAGAAGGCACTGGATGCCCTCGCCGATAGTGGACGGATTTCTTTCAAGGAGTATGGCAAGCAGAAGATATATATCGCTCGGCAAGACCAATTCCAGATCCCCAACAGCGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGCAACATCTAGACGAGCATAAAAAGGCTATTAGCCAGGTTGAGGAAGTCAAACTTAACGCTGGAACAGATGCGGGAAAAGGAAGCTATGCTCAGAAAGGAGTAGCTCGTTTGATAAATGCTTGTAAGGTTAAGGAATTGGAAGACAAATTGGAAGTATTGCGCGGAGGTGTAGCGTTGGTGAGTTCAGAAGACCGCAAAGCAATTGAGCAGATATACTCTGAGAAATTAAGCCAGTGGCGAAAACGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAACTCCCCCAAGGATCTAAAAGAATTTAAGGAAGAACTTGGCATTGAGTACGATGAAGATGTGGGCGTGAATTTGCAGTCATTTAGTGACATGTTACCACAAAATCGAAAAAGGCCCCGGGGAAAGTGA

Protein sequence

MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSLQKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQQHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALVSSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK

Homology

[Close]

BLAST of ClCG05G022860 vs. NCBI nr
Match: XP_038893461.1 (homologous-pairing protein 2 homolog [Benincasa hispida])

HSP 1 Score: 349.0 bits (894), Expect = 3.5e-92
Identity = 198/257 (77.04%), Postives = 204/257 (79.38%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQNAADSL
Sbjct: 1   MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNAADSL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           QHLDEHKK ISQVEE      T     +  Q      +   +VKELEDKLE+LRGGV LV
Sbjct: 121 QHLDEHKKVISQVEE---EIRTLQSNLTLEQMREKEAMLRKEVKELEDKLEILRGGVTLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQI+SEKLSQWRKRKRMFKDIWDAITENSPKDLK+FKEELGIEYDEDVGVNL
Sbjct: 181 SPEDRKAIEQIFSEKLSQWRKRKRMFKDIWDAITENSPKDLKDFKEELGIEYDEDVGVNL 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 241 QSFSDMLPQNRKRPRGK 226

[Close]

BLAST of ClCG05G022860 vs. NCBI nr
Match: XP_008446584.1 (PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo] >XP_008446586.1 PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo] >XP_008446587.1 PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 1.0e-91
Identity = 198/257 (77.04%), Postives = 205/257 (79.77%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQNAADSL
Sbjct: 40  MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNAADSL 99

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+GRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 100 QKFNLKKTAVQKALDSLADTGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 159

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           +HLDEHKKAISQVEE      T     +  Q     ++   +VKELEDKLEVLR GV LV
Sbjct: 160 KHLDEHKKAISQVEE---EIRTLQSNLTLEQMREKEVMLRKEVKELEDKLEVLRRGVTLV 219

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL
Sbjct: 220 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 265

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 280 QSFSDMLPQNRKRPRGK 265

[Close]

BLAST of ClCG05G022860 vs. NCBI nr
Match: KAA0034541.1 (homologous-pairing protein 2-like protein isoform X1 [Cucumis melo var. makuwa] >TYK09095.1 homologous-pairing protein 2-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 1.0e-91
Identity = 198/257 (77.04%), Postives = 205/257 (79.77%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQNAADSL
Sbjct: 1   MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNAADSL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+GRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 61  QKFNLKKTAVQKALDSLADTGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           +HLDEHKKAISQVEE      T     +  Q     ++   +VKELEDKLEVLR GV LV
Sbjct: 121 KHLDEHKKAISQVEE---EIRTLQSNLTLEQMREKEVMLRKEVKELEDKLEVLRRGVTLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL
Sbjct: 181 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 241 QSFSDMLPQNRKRPRGK 226

[Close]

BLAST of ClCG05G022860 vs. NCBI nr
Match: XP_008446588.1 (PREDICTED: homologous-pairing protein 2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 3.0e-91
Identity = 197/256 (76.95%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQNAADSL
Sbjct: 40  MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNAADSL 99

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+GRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 100 QKFNLKKTAVQKALDSLADTGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 159

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           +HLDEHKKAISQVEE      T     +  Q     ++   +VKELEDKLEVLR GV LV
Sbjct: 160 KHLDEHKKAISQVEE---EIRTLQSNLTLEQMREKEVMLRKEVKELEDKLEVLRRGVTLV 219

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL
Sbjct: 220 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 264

Query: 241 QSFSDMLPQNRKRPRG 257
           QSFSDMLPQNRKRPRG
Sbjct: 280 QSFSDMLPQNRKRPRG 264

[Close]

BLAST of ClCG05G022860 vs. NCBI nr
Match: XP_004135104.1 (homologous-pairing protein 2 homolog [Cucumis sativus] >KGN52066.1 hypothetical protein Csa_008124 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-88
Identity = 194/257 (75.49%), Postives = 201/257 (78.21%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRP+NSQNAADSL
Sbjct: 1   MAPKSDSAE-----------AIVLNFVNE-----------------QNRPINSQNAADSL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 61  QKFNLKKTAVQKALDSLADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           + L EHKKAISQVEE      T     +  Q      +   +VKELE+KLEVLR GV LV
Sbjct: 121 KQLGEHKKAISQVEE---EIRTLQSNLTLEQMREKEAMLRMEVKELEEKLEVLRRGVTLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENS KDLKEFKEELGIEYDEDVGVNL
Sbjct: 181 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSSKDLKEFKEELGIEYDEDVGVNL 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 241 QSFSDMLPQNRKRPRGK 226

[Close]

BLAST of ClCG05G022860 vs. ExPASy Swiss-Prot
Match: Q9FX64 (Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.1e-72
Identity = 151/257 (58.75%), Postives = 189/257 (73.54%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSD+ E           AIVLNFVNE                 QN+PLN+QNAAD+L
Sbjct: 1   MAPKSDNTE-----------AIVLNFVNE-----------------QNKPLNTQNAADAL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+G+I+FKEYGKQKIYIARQDQF+IPNSEEL QMKE NAKLQ
Sbjct: 61  QKFNLKKTAVQKALDSLADAGKITFKEYGKQKIYIARQDQFEIPNSEELAQMKEDNAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           + L E KK IS VE    +  ++       +K  A+L    +VKE+E+KL  LR G+ LV
Sbjct: 121 EQLQEKKKTISDVESEIKSLQSNLTLEEIQEKD-AKLRK--EVKEMEEKLVKLREGITLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
             ED+KA+E +Y++K++QWRKRKRMF+DIWD +TENSPKD+KE KEELGIEYDEDVG++ 
Sbjct: 181 RPEDKKAVEDMYADKINQWRKRKRMFRDIWDTVTENSPKDVKELKEELGIEYDEDVGLSF 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           Q+++D++   +KRPRG+
Sbjct: 241 QAYADLIQHGKKRPRGQ 226

[Close]

BLAST of ClCG05G022860 vs. ExPASy Swiss-Prot
Match: Q63ZL2 (Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-20
Identity = 73/202 (36.14%), Postives = 111/202 (54.95%), Query Frame = 0


Query: 47  QNRPLNSQNAADSLQK-FNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPN 106
           QNRP ++Q+   +LQ+   L KTAV K ++ LA  G+I  K YGKQKIY A Q+QF   +
Sbjct: 20  QNRPYSTQDVFSNLQRDHGLGKTAVVKTMELLAQKGKIKEKVYGKQKIYFADQEQFPSVS 79

Query: 107 SEEL----TQMKEANAKLQQHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINAC 166
             EL     Q+ E ++KLQ      ++  S+++++  +  T+        K V+ L   C
Sbjct: 80  DSELKDLDAQVTELSSKLQSSQQSCRQLESELKDLTSSLTTEE-----MLKEVSCLKEEC 139

Query: 167 KVKELEDKLEVLRGGVALVSSEDRKAIEQIYSEK---LSQWRKRKRMFKDIWDAITENSP 226
                E KL  ++     V+  ++   E++Y E+     +W+KRKRM  DI+DAI E  P
Sbjct: 140 --DRHEHKLTNIKSATNHVTPAEK---EKVYGERKHFCKEWKKRKRMATDIFDAILEGYP 199

Query: 227 KDLKEFKEELGIEYDEDVGVNL 241
           K  K+F EE+G+E DED  V +
Sbjct: 200 KSKKQFFEEVGVETDEDCNVTV 211

[Close]

BLAST of ClCG05G022860 vs. ExPASy Swiss-Prot
Match: O35047 (Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.4e-20
Identity = 70/195 (35.90%), Postives = 105/195 (53.85%), Query Frame = 0


Query: 47  QNRPLNSQNAADSLQK-FNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPN 106
           QNRP ++Q+   +LQK   L K AV KALD LA  G+I  K YGKQKIY A Q+QF   +
Sbjct: 23  QNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTYGKQKIYFADQNQFDTVS 82

Query: 107 SEELTQMKEANAKLQQHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKE 166
             +L  +  +   L   +   +++   + E +L   T A      QK +  L   C   +
Sbjct: 83  DADLHGLDASIVALTAKVQSLQQSCRHM-EAELKELTSALTTPEMQKEIQELKKEC--AQ 142

Query: 167 LEDKLEVLRGGVALVSSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFK 226
             ++L+ ++     V+ E+++ + +   +   +WRKRKRM  ++ DAI E  PK  K+F 
Sbjct: 143 YTERLKNIKAATNHVTPEEKEKVYRDRQKYCKEWRKRKRMTTELCDAILEGYPKSKKQFF 202

Query: 227 EELGIEYDEDVGVNL 241
           EE+GIE DED  V L
Sbjct: 203 EEVGIETDEDHNVLL 214

[Close]

BLAST of ClCG05G022860 vs. ExPASy Swiss-Prot
Match: Q91ZY6 (Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.4e-20
Identity = 70/195 (35.90%), Postives = 103/195 (52.82%), Query Frame = 0


Query: 47  QNRPLNSQNAADSLQK-FNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPN 106
           QNRP ++Q+   +LQK   L K AV KALD LA  G+I  K YGKQKIY A QDQF   +
Sbjct: 23  QNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQQGKIKEKTYGKQKIYFADQDQFDTVS 82

Query: 107 SEELTQMKEANAKLQQHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKE 166
             +L  +  +   L   +   +++   + E +L   T A      Q  +  L   C    
Sbjct: 83  DADLHSLDASIMALTAKVQGLQQSCRHM-EAELKELTSALTTPEMQTEIQELKKEC--AR 142

Query: 167 LEDKLEVLRGGVALVSSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFK 226
             ++L+ ++     V+ E+++ + +   +   +WRKRKRM  ++ DAI E  PK  K+F 
Sbjct: 143 YTERLKNIKAATNHVTPEEKEKVYRERQKYCKEWRKRKRMTTELCDAILEGYPKSKKQFF 202

Query: 227 EELGIEYDEDVGVNL 241
           EE+GIE DED  V L
Sbjct: 203 EEVGIETDEDHNVTL 214

[Close]

BLAST of ClCG05G022860 vs. ExPASy Swiss-Prot
Match: Q9P2W1 (Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.3e-19
Identity = 71/198 (35.86%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 47  QNRPLNSQNAADSLQK-FNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPN 106
           QNRP +SQ+   +LQ+   L K  V K L+ LA  G+I  K YGKQKIY A QDQF + +
Sbjct: 23  QNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVS 82

Query: 107 SEELTQMKEANAKLQQHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKE 166
             +L  +      L   +   +++   + E +L   + A      QK +  L   C    
Sbjct: 83  DADLQVLDGKIVALTAKVQSLQQSCRYM-EAELKELSSALTTPEMQKEIQELKKEC--AG 142

Query: 167 LEDKLEVLRGGVALVSSEDRKAIEQIYSEK---LSQWRKRKRMFKDIWDAITENSPKDLK 226
             ++L+ ++     V+ E++   EQ+Y E+     +WRKRKRM  ++ DAI E  PK  K
Sbjct: 143 YRERLKNIKAATNHVTPEEK---EQVYRERQKYCKEWRKRKRMATELSDAILEGYPKSKK 202

Query: 227 EFKEELGIEYDEDVGVNL 241
           +F EE+GIE DED  V L
Sbjct: 203 QFFEEVGIETDEDYNVTL 214

[Close]

BLAST of ClCG05G022860 vs. ExPASy TrEMBL
Match: A0A1S3BG28 (Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 5.0e-92
Identity = 198/257 (77.04%), Postives = 205/257 (79.77%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQNAADSL
Sbjct: 40  MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNAADSL 99

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+GRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 100 QKFNLKKTAVQKALDSLADTGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 159

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           +HLDEHKKAISQVEE      T     +  Q     ++   +VKELEDKLEVLR GV LV
Sbjct: 160 KHLDEHKKAISQVEE---EIRTLQSNLTLEQMREKEVMLRKEVKELEDKLEVLRRGVTLV 219

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL
Sbjct: 220 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 265

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 280 QSFSDMLPQNRKRPRGK 265

[Close]

BLAST of ClCG05G022860 vs. ExPASy TrEMBL
Match: A0A5A7SYM2 (Homologous-pairing protein 2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00850 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 5.0e-92
Identity = 198/257 (77.04%), Postives = 205/257 (79.77%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQNAADSL
Sbjct: 1   MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNAADSL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+GRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 61  QKFNLKKTAVQKALDSLADTGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           +HLDEHKKAISQVEE      T     +  Q     ++   +VKELEDKLEVLR GV LV
Sbjct: 121 KHLDEHKKAISQVEE---EIRTLQSNLTLEQMREKEVMLRKEVKELEDKLEVLRRGVTLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL
Sbjct: 181 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 241 QSFSDMLPQNRKRPRGK 226

[Close]

BLAST of ClCG05G022860 vs. ExPASy TrEMBL
Match: A0A1S3BG80 (Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.5e-91
Identity = 197/256 (76.95%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQNAADSL
Sbjct: 40  MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNAADSL 99

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+GRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 100 QKFNLKKTAVQKALDSLADTGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 159

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           +HLDEHKKAISQVEE      T     +  Q     ++   +VKELEDKLEVLR GV LV
Sbjct: 160 KHLDEHKKAISQVEE---EIRTLQSNLTLEQMREKEVMLRKEVKELEDKLEVLRRGVTLV 219

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL
Sbjct: 220 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 264

Query: 241 QSFSDMLPQNRKRPRG 257
           QSFSDMLPQNRKRPRG
Sbjct: 280 QSFSDMLPQNRKRPRG 264

[Close]

BLAST of ClCG05G022860 vs. ExPASy TrEMBL
Match: A0A0A0KWE5 (Homologous-pairing protein 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_5G608540 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 5.2e-89
Identity = 194/257 (75.49%), Postives = 201/257 (78.21%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRP+NSQNAADSL
Sbjct: 1   MAPKSDSAE-----------AIVLNFVNE-----------------QNRPINSQNAADSL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ
Sbjct: 61  QKFNLKKTAVQKALDSLADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           + L EHKKAISQVEE      T     +  Q      +   +VKELE+KLEVLR GV LV
Sbjct: 121 KQLGEHKKAISQVEE---EIRTLQSNLTLEQMREKEAMLRMEVKELEEKLEVLRRGVTLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENS KDLKEFKEELGIEYDEDVGVNL
Sbjct: 181 SPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSSKDLKEFKEELGIEYDEDVGVNL 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 241 QSFSDMLPQNRKRPRGK 226

[Close]

BLAST of ClCG05G022860 vs. ExPASy TrEMBL
Match: A0A6J1JDK5 (Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111483540 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.7e-87
Identity = 189/257 (73.54%), Postives = 199/257 (77.43%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSDSAE           AIVLNFVNE                 QNRPLNSQN ADSL
Sbjct: 1   MAPKSDSAE-----------AIVLNFVNE-----------------QNRPLNSQNVADSL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKT VQKALDALADSGRISFKEYGKQKIY+ARQDQF+IPNSEELTQMKEANAKLQ
Sbjct: 61  QKFNLKKTGVQKALDALADSGRISFKEYGKQKIYLARQDQFKIPNSEELTQMKEANAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           QHL E KKAI+QVEE      ++       +K     +   +VKELE+KLE LRGGV LV
Sbjct: 121 QHLAEQKKAITQVEEEIRTLQSNLTLKEMREK---EAMLRKEVKELEEKLETLRGGVTLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
           S EDRKAIEQIYSEKL QWRKRKRMFKDIWD ITENSPK+LKEFKEELGIEYDEDVGVNL
Sbjct: 181 SPEDRKAIEQIYSEKLGQWRKRKRMFKDIWDVITENSPKNLKEFKEELGIEYDEDVGVNL 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           QSFSDMLPQNRKRPRGK
Sbjct: 241 QSFSDMLPQNRKRPRGK 226

[Close]

BLAST of ClCG05G022860 vs. TAIR 10
Match: AT1G13330.1 (Arabidopsis Hop2 homolog )

HSP 1 Score: 274.6 bits (701), Expect = 7.9e-74
Identity = 151/257 (58.75%), Postives = 189/257 (73.54%), Query Frame = 0


Query: 1   MAPKSDSAEELNPSFVSKFPAIVLNFVNEVFVSSLCFTDFFVHPLTQNRPLNSQNAADSL 60
           MAPKSD+ E           AIVLNFVNE                 QN+PLN+QNAAD+L
Sbjct: 1   MAPKSDNTE-----------AIVLNFVNE-----------------QNKPLNTQNAADAL 60

Query: 61  QKFNLKKTAVQKALDALADSGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQ 120
           QKFNLKKTAVQKALD+LAD+G+I+FKEYGKQKIYIARQDQF+IPNSEEL QMKE NAKLQ
Sbjct: 61  QKFNLKKTAVQKALDSLADAGKITFKEYGKQKIYIARQDQFEIPNSEELAQMKEDNAKLQ 120

Query: 121 QHLDEHKKAISQVEEVKLNAGTDAGKGSYAQKGVARLINACKVKELEDKLEVLRGGVALV 180
           + L E KK IS VE    +  ++       +K  A+L    +VKE+E+KL  LR G+ LV
Sbjct: 121 EQLQEKKKTISDVESEIKSLQSNLTLEEIQEKD-AKLRK--EVKEMEEKLVKLREGITLV 180

Query: 181 SSEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNL 240
             ED+KA+E +Y++K++QWRKRKRMF+DIWD +TENSPKD+KE KEELGIEYDEDVG++ 
Sbjct: 181 RPEDKKAVEDMYADKINQWRKRKRMFRDIWDTVTENSPKDVKELKEELGIEYDEDVGLSF 226

Query: 241 QSFSDMLPQNRKRPRGK 258
           Q+++D++   +KRPRG+
Sbjct: 241 QAYADLIQHGKKRPRGQ 226

The following BLAST results are available for this feature:

BLAST of ClCG05G022860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893461.1	3.5e-92	77.04	homologous-pairing protein 2 homolog [Benincasa hispida]	[more]
XP_008446584.1	1.0e-91	77.04	PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo] >XP_00...	[more]
KAA0034541.1	1.0e-91	77.04	homologous-pairing protein 2-like protein isoform X1 [Cucumis melo var. makuwa] ...	[more]
XP_008446588.1	3.0e-91	76.95	PREDICTED: homologous-pairing protein 2 homolog isoform X2 [Cucumis melo]	[more]
XP_004135104.1	1.1e-88	75.49	homologous-pairing protein 2 homolog [Cucumis sativus] >KGN52066.1 hypothetical ...	[more]

BLAST of ClCG05G022860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX64	1.1e-72	58.75	Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=...	[more]
Q63ZL2	4.9e-20	36.14	Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 S...	[more]
O35047	6.4e-20	35.90	Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV...	[more]
Q91ZY6	8.4e-20	35.90	Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE...	[more]
Q9P2W1	9.3e-19	35.86	Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=...	[more]

BLAST of ClCG05G022860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BG28	5.0e-92	77.04	Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=...	[more]
A0A5A7SYM2	5.0e-92	77.04	Homologous-pairing protein 2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BG80	1.5e-91	76.95	Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=...	[more]
A0A0A0KWE5	5.2e-89	75.49	Homologous-pairing protein 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_5G608540 ...	[more]
A0A6J1JDK5	1.7e-87	73.54	Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111483540...	[more]

BLAST of ClCG05G022860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13330.1	7.9e-74	58.75	Arabidopsis Hop2 homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..139
IPR010776	Homologous-pairing protein 2, winged helix domain	PFAM	PF07106	TBPIP	coord: 47..96 e-value: 1.1E-20 score: 73.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 41..107 e-value: 6.0E-18 score: 66.6
IPR040661	Leucine zipper with capping helix domain	PFAM	PF18517	LZ3wCH	coord: 181..237 e-value: 7.1E-18 score: 64.4
IPR040461	Homologous-pairing protein 2	PANTHER	PTHR15938	TBP-1 INTERACTING PROTEIN	coord: 1..252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G022860.2	ClCG05G022860.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	homologous chromosome pairing at meiosis
biological_process	GO:0000709	meiotic joint molecule formation
biological_process	GO:0010774	meiotic strand invasion involved in reciprocal meiotic recombination
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0000794	condensed nuclear chromosome
cellular_component	GO:0120231	DNA recombinase auxiliary factor complex
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0120230	recombinase activator activity