ClCG05G022780 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G022780
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein NIM1-INTERACTING 2
Location	CG_Chr05: 34649132 .. 34649611 (+)
RNA-Seq Expression	ClCG05G022780
Synteny	ClCG05G022780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTTGAGTTGTTTCCGGCGACTCGGAGTACGGAGAAAGGGAAAAGAAAGCAGGGATACGACGCCGGGTCGGATAGCCAGAAGGATGCGGTGGCGGGCAGAGGAAAAGAAGCGGAGACGGCGTCGGATGAAGAGGTGGAGGAGTTCTTCTCCATTCTGAAGCGATTACACGCGGCGTCGAAACACATAGAGAAGATCGACGGTGCGAGCCGTTTATTGATGGGAAAGAGATCGAAGCTGATGAAGTCGAGCGAGGAAGAAGCCGACGAAGTTGAAATTAGAGCAGAGAGAATTCCATCGCACAAATTGGACAGAAATTTGGATCTGGATCTTAACTTAGAACCTGTATGCGTCGAATTGGATGGTAAAACAAGCCGGAGTCTGAATCCGAAGCCGGCGCTCGAATCCGAAGCCGGAGTGCGTAGATTCGGCCGCCGATTCTTGCTGGATATTGAAGTTTCCGACACAGATGAATGA

mRNA sequence

ATGCCGTTTGAGTTGTTTCCGGCGACTCGGAGTACGGAGAAAGGGAAAAGAAAGCAGGGATACGACGCCGGGTCGGATAGCCAGAAGGATGCGGTGGCGGGCAGAGGAAAAGAAGCGGAGACGGCGTCGGATGAAGAGGTGGAGGAGTTCTTCTCCATTCTGAAGCGATTACACGCGGCGTCGAAACACATAGAGAAGATCGACGGTGCGAGCCGTTTATTGATGGGAAAGAGATCGAAGCTGATGAAGTCGAGCGAGGAAGAAGCCGACGAAGTTGAAATTAGAGCAGAGAGAATTCCATCGCACAAATTGGACAGAAATTTGGATCTGGATCTTAACTTAGAACCTGTATGCGTCGAATTGGATGGTAAAACAAGCCGGAGTCTGAATCCGAAGCCGGCGCTCGAATCCGAAGCCGGAGTGCGTAGATTCGGCCGCCGATTCTTGCTGGATATTGAAGTTTCCGACACAGATGAATGA

Coding sequence (CDS)

ATGCCGTTTGAGTTGTTTCCGGCGACTCGGAGTACGGAGAAAGGGAAAAGAAAGCAGGGATACGACGCCGGGTCGGATAGCCAGAAGGATGCGGTGGCGGGCAGAGGAAAAGAAGCGGAGACGGCGTCGGATGAAGAGGTGGAGGAGTTCTTCTCCATTCTGAAGCGATTACACGCGGCGTCGAAACACATAGAGAAGATCGACGGTGCGAGCCGTTTATTGATGGGAAAGAGATCGAAGCTGATGAAGTCGAGCGAGGAAGAAGCCGACGAAGTTGAAATTAGAGCAGAGAGAATTCCATCGCACAAATTGGACAGAAATTTGGATCTGGATCTTAACTTAGAACCTGTATGCGTCGAATTGGATGGTAAAACAAGCCGGAGTCTGAATCCGAAGCCGGCGCTCGAATCCGAAGCCGGAGTGCGTAGATTCGGCCGCCGATTCTTGCTGGATATTGAAGTTTCCGACACAGATGAATGA

Protein sequence

MPFELFPATRSTEKGKRKQGYDAGSDSQKDAVAGRGKEAETASDEEVEEFFSILKRLHAASKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDLNLEPVCVELDGKTSRSLNPKPALESEAGVRRFGRRFLLDIEVSDTDE

Homology

[Close]

BLAST of ClCG05G022780 vs. NCBI nr
Match: XP_038892789.1 (protein NIM1-INTERACTING 2 [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 6.0e-50
Identity = 111/139 (79.86%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQGYDAGSDSQKDAVAGRGKEAETASDEEVEEFFSILKRLHAA 60
           MPFELFPA+RST++GKRK+  DAG+ SQ+DAVA RGKEAETA+DEEVEEFFSILKRLHAA
Sbjct: 1   MPFELFPASRSTDRGKRKREDDAGTGSQRDAVADRGKEAETATDEEVEEFFSILKRLHAA 60

Query: 61  SKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDLNLEPVCVE 120
           +K+IEKIDGASRLLMGKRSK  KSSEEEADEVEIRAE+IP HKLDRNLDLDLNLEP CVE
Sbjct: 61  TKYIEKIDGASRLLMGKRSKPTKSSEEEADEVEIRAEKIPDHKLDRNLDLDLNLEPACVE 120

Query: 121 LDGKTSRSLNPKPALESEA 140
            D KTSRS N K +    A
Sbjct: 121 SDDKTSRSQNLKTSCADSA 139

[Close]

BLAST of ClCG05G022780 vs. NCBI nr
Match: XP_008446591.1 (PREDICTED: protein NIM1-INTERACTING 2 [Cucumis melo] >KAA0034549.1 protein NIM1-INTERACTING 2 [Cucumis melo var. makuwa] >TYK09103.1 protein NIM1-INTERACTING 2 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 6.2e-47
Identity = 104/141 (73.76%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQGYDAGSDSQKDAVAGRGKEAETASDEEVEEFFSILKRLHAA 60
           MPFELFP +RST++GKRK+G DAG+ +QKD V   GKEAETA+DEEVEEFFSILKRLHAA
Sbjct: 1   MPFELFPGSRSTDRGKRKRGDDAGAGNQKDVVTKEGKEAETATDEEVEEFFSILKRLHAA 60

Query: 61  SKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDLNLEPVCVE 120
           +K+IEKIDGAS LLMGKRSK MKS+EEE DEV IR ERIP  KLDRNLDLDLNLEPVCVE
Sbjct: 61  TKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLNLEPVCVE 120

Query: 121 LDGKTSRSLNPKPALESEAGV 142
            +GK+ +S N KP+    A V
Sbjct: 121 SEGKSRQSQNLKPSCVDSAAV 141

[Close]

BLAST of ClCG05G022780 vs. NCBI nr
Match: KGN52074.1 (hypothetical protein Csa_008594 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 4.5e-45
Identity = 102/139 (73.38%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQGYDAGSDSQKDAVAGRGKEAETASDEEVEEFFSILKRLHAA 60
           MPFELFPA+RSTE+GKRK+G DAG  +QKD  A  G+EAETA+DEEVEEFFSILKRLHAA
Sbjct: 1   MPFELFPASRSTERGKRKRGDDAGVGNQKDVGAEEGREAETATDEEVEEFFSILKRLHAA 60

Query: 61  SKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDLNLEPVCVE 120
           +K+IEKIDGAS LLMGKR K MKS+EEE DEV I+AERIP  KLDRNLDLDLNLEPVCVE
Sbjct: 61  TKYIEKIDGASHLLMGKRPKPMKSNEEEGDEVGIKAERIPEQKLDRNLDLDLNLEPVCVE 120

Query: 121 LDGKTSRSLNPKPALESEA 140
            +GK+    N KP+    A
Sbjct: 121 SEGKSRERQNRKPSCVDSA 139

[Close]

BLAST of ClCG05G022780 vs. NCBI nr
Match: XP_023542001.1 (uncharacterized protein LOC111801981 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-35
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQ------GYD--AGSDSQKDAVAGRGKEAETASDEEVEEFFS 60
           MPFELFP++R T++GKRK+       YD  A + +QK+ VA RG E E  SDEEVEEFF+
Sbjct: 1   MPFELFPSSR-TDRGKRKRERGEHADYDAAAAAGNQKETVAERGNEREMTSDEEVEEFFA 60

Query: 61  ILKRLHAASKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDL 120
           ILKRLHAA+K+IEKIDGA  LLMGKR+K  K+SE+E D VEIR +RIP  KLDRNLDLDL
Sbjct: 61  ILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPDQKLDRNLDLDL 120

Query: 121 NLEPVCVELDGKTSRS 129
           NLEP CVE DGK  RS
Sbjct: 121 NLEPTCVESDGKERRS 135

[Close]

BLAST of ClCG05G022780 vs. NCBI nr
Match: KAG6573971.1 (hypothetical protein SDJN03_27858, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013028.1 hypothetical protein SDJN02_25784, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 94/155 (60.65%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQ------GYD--AGSDSQKDAVAGRGKEAETASDEEVEEFFS 60
           MPFELFP++R T++GKRK+       YD  A + +QK+ VA RG E E  SDEEVEEFF+
Sbjct: 1   MPFELFPSSR-TDRGKRKRERGEHADYDAAAAAGNQKETVAERGNEREMTSDEEVEEFFA 60

Query: 61  ILKRLHAASKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRN--LDL 120
           ILKRLHAA+K+IEKIDGA  LLMGKR+K  K+SE+E D VEIR +RIP  KLDRN  LDL
Sbjct: 61  ILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLDL 120

Query: 121 DLNLEPVCVELDGK--TSRSLNPKPALESEAGVRR 144
           DLNLEP  VE DGK   SRS N K   +  A   R
Sbjct: 121 DLNLEPASVESDGKERRSRSHNLKSLTDDSAADSR 154

[Close]

BLAST of ClCG05G022780 vs. ExPASy TrEMBL
Match: A0A5A7SZN6 (Protein NIM1-INTERACTING 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00930 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.0e-47
Identity = 104/141 (73.76%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQGYDAGSDSQKDAVAGRGKEAETASDEEVEEFFSILKRLHAA 60
           MPFELFP +RST++GKRK+G DAG+ +QKD V   GKEAETA+DEEVEEFFSILKRLHAA
Sbjct: 1   MPFELFPGSRSTDRGKRKRGDDAGAGNQKDVVTKEGKEAETATDEEVEEFFSILKRLHAA 60

Query: 61  SKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDLNLEPVCVE 120
           +K+IEKIDGAS LLMGKRSK MKS+EEE DEV IR ERIP  KLDRNLDLDLNLEPVCVE
Sbjct: 61  TKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLNLEPVCVE 120

Query: 121 LDGKTSRSLNPKPALESEAGV 142
            +GK+ +S N KP+    A V
Sbjct: 121 SEGKSRQSQNLKPSCVDSAAV 141

[Close]

BLAST of ClCG05G022780 vs. ExPASy TrEMBL
Match: A0A1S3BFE7 (protein NIM1-INTERACTING 2 OS=Cucumis melo OX=3656 GN=LOC103489277 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.0e-47
Identity = 104/141 (73.76%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQGYDAGSDSQKDAVAGRGKEAETASDEEVEEFFSILKRLHAA 60
           MPFELFP +RST++GKRK+G DAG+ +QKD V   GKEAETA+DEEVEEFFSILKRLHAA
Sbjct: 1   MPFELFPGSRSTDRGKRKRGDDAGAGNQKDVVTKEGKEAETATDEEVEEFFSILKRLHAA 60

Query: 61  SKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDLNLEPVCVE 120
           +K+IEKIDGAS LLMGKRSK MKS+EEE DEV IR ERIP  KLDRNLDLDLNLEPVCVE
Sbjct: 61  TKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLNLEPVCVE 120

Query: 121 LDGKTSRSLNPKPALESEAGV 142
            +GK+ +S N KP+    A V
Sbjct: 121 SEGKSRQSQNLKPSCVDSAAV 141

[Close]

BLAST of ClCG05G022780 vs. ExPASy TrEMBL
Match: A0A0A0KT67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609110 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-45
Identity = 102/139 (73.38%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQGYDAGSDSQKDAVAGRGKEAETASDEEVEEFFSILKRLHAA 60
           MPFELFPA+RSTE+GKRK+G DAG  +QKD  A  G+EAETA+DEEVEEFFSILKRLHAA
Sbjct: 1   MPFELFPASRSTERGKRKRGDDAGVGNQKDVGAEEGREAETATDEEVEEFFSILKRLHAA 60

Query: 61  SKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRNLDLDLNLEPVCVE 120
           +K+IEKIDGAS LLMGKR K MKS+EEE DEV I+AERIP  KLDRNLDLDLNLEPVCVE
Sbjct: 61  TKYIEKIDGASHLLMGKRPKPMKSNEEEGDEVGIKAERIPEQKLDRNLDLDLNLEPVCVE 120

Query: 121 LDGKTSRSLNPKPALESEA 140
            +GK+    N KP+    A
Sbjct: 121 SEGKSRERQNRKPSCVDSA 139

[Close]

BLAST of ClCG05G022780 vs. ExPASy TrEMBL
Match: A0A6J1FZ89 (uncharacterized protein LOC111449260 OS=Cucurbita moschata OX=3662 GN=LOC111449260 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 93/155 (60.00%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQ------GYD--AGSDSQKDAVAGRGKEAETASDEEVEEFFS 60
           MPFELFP++R T++GKRK+       YD  A + +QK+ VA RG E +  SDEEVEEFF+
Sbjct: 1   MPFELFPSSR-TDRGKRKRERGEHADYDAAAAAGNQKETVAERGNERQMTSDEEVEEFFA 60

Query: 61  ILKRLHAASKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRN--LDL 120
           ILKRLHAA+K+IEKIDGA  LLMGKR+K  K+SE+E D VEIR +RIP  KLDRN  LDL
Sbjct: 61  ILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLDL 120

Query: 121 DLNLEPVCVELDGK--TSRSLNPKPALESEAGVRR 144
           DLNLEP  VE DGK   SRS N K   +  A   R
Sbjct: 121 DLNLEPASVESDGKERRSRSHNLKSLTDDSAADSR 154

[Close]

BLAST of ClCG05G022780 vs. ExPASy TrEMBL
Match: A0A6J1HXL3 (uncharacterized protein LOC111467566 OS=Cucurbita maxima OX=3661 GN=LOC111467566 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.0e-28
Identity = 80/127 (62.99%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 1   MPFELFPATRSTEKGKRKQ------GYDAG---SDSQKDAVAGRGKEAETASDEEVEEFF 60
           MPFELFP++R+ ++GKRK+       Y+A    + +QK  VA RGKE E  SDEEVEEFF
Sbjct: 1   MPFELFPSSRA-DRGKRKRERGEHADYEAAAADAGNQKKTVADRGKEREMTSDEEVEEFF 60

Query: 61  SILKRLHAASKHIEKIDGASRLLMGKRSKLMKSSEEEADEVEIRAERIPSHKLDRN--LD 117
           +ILKRLHAA+K+IEKIDGA   LMGKR+K  K+SE+E D VEIR +RIP  KLDRN  LD
Sbjct: 61  TILKRLHAATKYIEKIDGARSFLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLD 120

The following BLAST results are available for this feature:

BLAST of ClCG05G022780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892789.1	6.0e-50	79.86	protein NIM1-INTERACTING 2 [Benincasa hispida]	[more]
XP_008446591.1	6.2e-47	73.76	PREDICTED: protein NIM1-INTERACTING 2 [Cucumis melo] >KAA0034549.1 protein NIM1-...	[more]
KGN52074.1	4.5e-45	73.38	hypothetical protein Csa_008594 [Cucumis sativus]	[more]
XP_023542001.1	4.2e-35	66.18	uncharacterized protein LOC111801981 [Cucurbita pepo subsp. pepo]	[more]
KAG6573971.1	1.1e-32	60.65	hypothetical protein SDJN03_27858, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG05G022780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G022780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZN6	3.0e-47	73.76	Protein NIM1-INTERACTING 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BFE7	3.0e-47	73.76	protein NIM1-INTERACTING 2 OS=Cucumis melo OX=3656 GN=LOC103489277 PE=4 SV=1	[more]
A0A0A0KT67	2.2e-45	73.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609110 PE=4 SV=1	[more]
A0A6J1FZ89	1.2e-32	60.00	uncharacterized protein LOC111449260 OS=Cucurbita moschata OX=3662 GN=LOC1114492...	[more]
A0A6J1HXL3	7.0e-28	62.99	uncharacterized protein LOC111467566 OS=Cucurbita maxima OX=3661 GN=LOC111467566...	[more]

BLAST of ClCG05G022780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR35735:SF8	PROTEIN NIM1-INTERACTING 2	coord: 13..118
IPR034577	Protein NIM1-INTERACTING 2	PANTHER	PTHR35735	PROTEIN NIM1-INTERACTING 2	coord: 13..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G022780.1	ClCG05G022780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance