ClCG05G022690 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G022690
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CLAVATA3/ESR (CLE)-related protein 43
Location	CG_Chr05: 34572102 .. 34573065 (+)
RNA-Seq Expression	ClCG05G022690
Synteny	ClCG05G022690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTACCAGAAGAATCGCAACTTCCTCCTCCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGCCAAGTTAGAGCTTCACGGGTTTTTCCTCCGCCGCCACCGCCGCCGCACACGGCGGACAAATCACTCACTGGCGAAGAAAAAGACAACGCTAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCAGATCCTCTTCATAATTAGTAGAATAAATAATTCAATTTTACACTCCTTCCTTTCTTTGTCACTATATTTCTTCGTCCAAAATACCCCCGTTTTTCTCTTCATTTTTTTTTTCTTTTTTGCTACATTAAGACGCGTTTTTACTCTGATTCAACAGAGAAAACCGGGGTTATTTTGGTACTTCTCTTTGTTATATATGAAATCATAAATTCCTTCTTTTTCATTCATTCGAGTACAGAAAACAATGTGTAGTGAGTGTTGAGCGATTTCCCTTTTCATGTTTTTCTGGGTTCTTTTTCTCTTACTCTCTTTTTTCTTGGACTTGAATGGAAACACCAAATTTTGTACTGCAAAAAAGGCAGAGGCCAGAAGGTCGGTTCTGTGTCTGTACAAAAATTTGGAGGGTGGGCTCAATTTGAAGAAAAAAGCCAATCCATTGTCCGTAACTGAATCGGAAGAGAGAAGGTAAAAAAGTGGAAAGAAAAAGGAAGAATTAAAATTAAATTAATCTCTCTGATGTGTATTATGTCATTTCAATGTCGAATCTGAATGATCTGGCGTTGCAGAAATATCTGTTTATTATTCTTCGTCCATTTCCGTTGGGAAGCCGGAGGCTGAAGCTCTCCTAATTGGGCCTACTGGGCCTTCATCACCGAATCAACAGGCCCAACCCACATAA

mRNA sequence

ATGTTTACCAGAAGAATCGCAACTTCCTCCTCCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGCCAAGTTAGAGCTTCACGGGTTTTTCCTCCGCCGCCACCGCCGCCGCACACGGCGGACAAATCACTCACTGGCGAAGAAAAAGACAACGCTAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAAAATATCTGTTTATTATTCTTCGTCCATTTCCGTTGGGAAGCCGGAGGCTGAAGCTCTCCTAATTGGGCCTACTGGGCCTTCATCACCGAATCAACAGGCCCAACCCACATAA

Coding sequence (CDS)

ATGTTTACCAGAAGAATCGCAACTTCCTCCTCCTCTGCTTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCACTGCCAAGTTAGAGCTTCACGGGTTTTTCCTCCGCCGCCACCGCCGCCGCACACGGCGGACAAATCACTCACTGGCGAAGAAAAAGACAACGCTAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAAAATATCTGTTTATTATTCTTCGTCCATTTCCGTTGGGAAGCCGGAGGCTGAAGCTCTCCTAATTGGGCCTACTGGGCCTTCATCACCGAATCAACAGGCCCAACCCACATAA

Protein sequence

MFTRRIATSSSSAFAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRRIPKISVYYSSSISVGKPEAEALLIGPTGPSSPNQQAQPT

Homology

[Close]

BLAST of ClCG05G022690 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 5.7e-38
Identity = 84/99 (84.85%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1  MFTRRIATSSS----SAFAILILILWVSQIWVCCHCQVRASRVF--PPPPPPPHTADKSL 60
          MF RRI TSSS    SAFAILILILWVSQIWVCCHCQ RASR+F  PPPPPPPH ADKSL
Sbjct: 1  MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61 TGEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRRIP 94
          +GEEKDNAKN+LLQKYFNGRAFDRHR DEGFEDSKR+IP
Sbjct: 61 SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIP 99

[Close]

BLAST of ClCG05G022690 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 5.1e-31
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MFTRRIATSSSSAFAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEEK- 60
          M TRRIATSSSS+FA+LI ILWVSQIWVC HCQ RASR+F  PPPPPHTAD +LTG++K 
Sbjct: 1  MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIF--PPPPPHTADTTLTGDQKY 60

Query: 61 ---DNAKNELLQKYFNGRAFDRHRPDEGFEDSKRRIP 94
              NA+ ELL+KYF G+AFDRHR DEGFEDSKRRIP
Sbjct: 61 NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIP 95

[Close]

BLAST of ClCG05G022690 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 5.1e-31
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1   MFTRRIATSSSSAFAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEEK- 60
           M TRRIATSSSS+FA+LI ILWVSQIWVC HCQ RASR+F  PPPPPHTAD +LTG++K 
Sbjct: 12  MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIF--PPPPPHTADTTLTGDQKY 71

Query: 61  ---DNAKNELLQKYFNGRAFDRHRPDEGFEDSKRRIP 94
               NA+ ELL+KYF G+AFDRHR DEGFEDSKRRIP
Sbjct: 72  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIP 106

[Close]

BLAST of ClCG05G022690 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 7.4e-22
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1  MFTRRIA--TSSSSAFAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEE 60
          M TRRIA  +SS+S+FAILILILWVSQIWVCCHCQ RASR+ PPP          LTG+ 
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP----------LTGDA 60

Query: 61 KDNA--KNELLQKYFNGRAFDRHRPDEGFEDSKRRIPKIS 97
          K +A  KNEL+QKY  GRA DRH   EGFEDSKRR+P  S
Sbjct: 61 KHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCS 87

[Close]

BLAST of ClCG05G022690 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-20
Identity = 66/98 (67.35%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1  MFTRRIATSSSSAFAILILILWVSQIWV-CCHCQVRASRVF---PPPPPPPHTADKSLTG 60
          M TRRIA SSS  FAILILILWVSQIWV CC  Q RASR+F   PPPPPPPHT DK+   
Sbjct: 1  MCTRRIAASSS--FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKT--- 60

Query: 61 EEKDNAKNELLQKYFNGRAF-DRHRPDEGFEDSKRRIP 94
           +  N + ELLQKYF  RAF D HR  EGF DSKR+IP
Sbjct: 61 -DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIP 92

[Close]

BLAST of ClCG05G022690 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.7e-38
Identity = 84/99 (84.85%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1  MFTRRIATSSS----SAFAILILILWVSQIWVCCHCQVRASRVF--PPPPPPPHTADKSL 60
          MF RRI TSSS    SAFAILILILWVSQIWVCCHCQ RASR+F  PPPPPPPH ADKSL
Sbjct: 1  MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61 TGEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRRIP 94
          +GEEKDNAKN+LLQKYFNGRAFDRHR DEGFEDSKR+IP
Sbjct: 61 SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIP 99

[Close]

BLAST of ClCG05G022690 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.6e-22
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 1  MFTRRIA--TSSSSAFAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEE 60
          M TRRIA  +SS+S+FAILILILWVSQIWVCCHCQ RASR+ PPP          LTG+ 
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP----------LTGDA 60

Query: 61 KDNA--KNELLQKYFNGRAFDRHRPDEGFEDSKRRIPKIS 97
          K +A  KNEL+QKY  GRA DRH   EGFEDSKRR+P  S
Sbjct: 61 KHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCS 87

[Close]

BLAST of ClCG05G022690 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-09
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 3  TRRIATSSSSAFAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEEKDNA 62
          +RR    SSS  A+++ ++++ QIWVC  C+  A R+FP    P     +++T  +    
Sbjct: 6  SRRSIMYSSSLVALVVFLIFMLQIWVCSDCKAGAIRIFPDNGMPSKLKHRNITTTDNKAT 65

Query: 63 KNELLQKYFNGRAFDRHRPDEGFEDSKRRIP 94
          K +LL+K+FNGRA   +   +GFE++KRR+P
Sbjct: 66 KQDLLRKFFNGRASSFNSSKKGFEENKRRVP 96

[Close]

BLAST of ClCG05G022690 vs. ExPASy TrEMBL
Match: A0A2C9UKL3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 31/91 (34.07%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 3  TRRIATSSSSAFAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEEKDNA 62
          +RR    SSS   +++ +++V QIWVC  C+  A R+FP     P+   ++++  +  ++
Sbjct: 6  SRRSIMYSSSLLVLVVFLIFVLQIWVCSDCKAGAIRIFPDNGMAPNLKQRNISTTDNKDS 65

Query: 63 KNELLQKYFNGRAFDRHRPDEGFEDSKRRIP 94
          K +L  K+FNGR +  +   +GFE++KRR+P
Sbjct: 66 KEDLFHKFFNGRQYSFNTTKKGFEENKRRVP 96

[Close]

BLAST of ClCG05G022690 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-08
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 16 ILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEEKDN-AKNELLQKYFNGR 75
          +++LI++  QIWVCC C+  A R+ P       T  + +    KDN  K +L QKYFNGR
Sbjct: 17 VVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTESQGM----KDNKGKGDLFQKYFNGR 76

Query: 76 AFDRHRPDEGFEDSKRRIP 94
          +F  ++ D GFE+SKRR+P
Sbjct: 77 SFSFNKTDRGFEESKRRVP 91

[Close]

BLAST of ClCG05G022690 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 41.2 bits (95), Expect = 7.4e-04
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 14 FAILILILWVSQIWVCCHCQVRASRVFPPPPPPPHTADKSLTGEEKDNAKNE----LLQK 73
          F++ +L++ + QIW+      R  R  P         D++     K+  KNE    L Q+
Sbjct: 10 FSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQR 69

Query: 74 YFNGRAFDRHRPDEGFEDSKRRIP 94
          YF GR+F  +  +  FEDS RRIP
Sbjct: 70 YFKGRSFGLNNTNSRFEDSNRRIP 88

The following BLAST results are available for this feature:

BLAST of ClCG05G022690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52083.1	5.7e-38	84.85	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG7032076.1	5.1e-31	75.26	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	5.1e-31	75.26	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022150497.1	7.4e-22	65.00	uncharacterized protein LOC111018633 [Momordica charantia]	[more]
KAG6573960.1	1.8e-20	67.35	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of ClCG05G022690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G022690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	2.7e-38	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	3.6e-22	65.00	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2C9VNI0	6.0e-09	37.36	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A2C9UKL3	1.0e-08	34.07	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=...	[more]
A0A061E6F8	3.9e-08	44.30	Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ...	[more]

BLAST of ClCG05G022690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25425.1	7.4e-04	33.33	CLAVATA3/ESR-RELATED 43	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..130
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 4..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G022690.1	ClCG05G022690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane