ClCG05G022640 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G022640
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	VQ motif-containing protein 8
Location	CG_Chr05: 34519335 .. 34519781 (-)
RNA-Seq Expression	ClCG05G022640
Synteny	ClCG05G022640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGACAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGGAGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

mRNA sequence

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGACAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGGAGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

Coding sequence (CDS)

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGACAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGGAGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

Protein sequence

MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSSSEEEENECGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

Homology

[Close]

BLAST of ClCG05G022640 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 240.7 bits (613), Expect = 7.8e-60
Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKSCEINGPRPSPLLIHKDSR IRKPQLRQPVIIYTHSPKIIHT PKDFMALVQRLT
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60

Query: 61  GFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENECGDQKQS-----LVQRQTNP 120
           GF PPPPP     LSLS  +RNFNDN+SSS   +EEE NECGDQKQS     LVQRQ+N 
Sbjct: 61  GFNPPPPPPPSNALSLSFSERNFNDNDSSSGLTTEEEINECGDQKQSVVLKQLVQRQSNS 120

Query: 121 SLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF 149
           SLLRYSSD+T PFSSPAL+NSLSPSFMEFLKALPEF
Sbjct: 121 SLLRYSSDVTTPFSSPALINSLSPSFMEFLKALPEF 156

[Close]

BLAST of ClCG05G022640 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.7e-44
Identity = 104/151 (68.87%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENECGDQKQSLVQRQTNPSLLRY 120
           GF PPPP           P+RN NDN+S+S   SEE+ NE          +Q+N S+L+Y
Sbjct: 61  GFNPPPPQ----------PERNSNDNDSTSGVTSEEDVNE----------KQSNCSVLKY 120

Query: 121 SSDLTPPFSSPALLNSLSPSFMEFLKALPEF 149
           SSD+T PFSSPA L+SLSPSFM+FLKALPEF
Sbjct: 121 SSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of ClCG05G022640 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 167.9 bits (424), Expect = 6.4e-38
Identity = 106/170 (62.35%), Postives = 115/170 (67.65%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KSC+INGPRPSPLLIHK SRLIRK  PQLRQP+IIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPSLPLPLSLSLPDRNFN---DNESSSSEEEENECGDQ-------KQSLVQR 120
           LTGFTPPPPP           DRN N   DN+SSS   EE  CGD        K+   Q 
Sbjct: 61  LTGFTPPPPP------HADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQS 120

Query: 121 QTN----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF 149
           Q++          P+ LRY+ D T  F+SP L NSLSPSFMEFLK LPEF
Sbjct: 121 QSHSFLADVPLFTPAGLRYAPDAT-SFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of ClCG05G022640 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-29
Identity = 79/102 (77.45%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKS EINGPRPSPLLIH  SRLIRKP QLRQP+IIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGFTPPPPPSLPLPLSL-SLPDRNFNDNESSS---SEEEENE 98
           TG  PPPP  LPLP +  SL +RN NDN+SSS   +EE+ NE
Sbjct: 61  TGCNPPPP--LPLPSAKPSLSERNLNDNDSSSGVTTEEDINE 100

[Close]

BLAST of ClCG05G022640 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-25
Identity = 79/152 (51.97%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK----PQLRQPVIIYTHSPKIIHTHPKDFMALV 60
           MSPPK   I+GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSSSEEEENECGDQKQSLVQRQTNPSLLR 120
           QRLTG +PP     P          + N++ SS   EE++ C                  
Sbjct: 61  QRLTGCSPPNADKAP----------SDNNDSSSVVTEEDSNC------------------ 118

Query: 121 YSSDLTPPFSSPALLNSLSPSFMEFLKALPEF 149
                 P F+  +L+NSLSPSFMEFLK LPEF
Sbjct: 121 ------PLFTPRSLVNSLSPSFMEFLKGLPEF 118

[Close]

BLAST of ClCG05G022640 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTG 64
           P P  L ++KDS +I+KP          + R PVIIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of ClCG05G022640 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-10
Identity = 57/160 (35.62%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPK 60
           M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSSSEEEENECGDQ-----KQSL 120
           DFMALVQRLTG                +  RN +++ SS   EE N   D       Q  
Sbjct: 61  DFMALVQRLTGLD-------------EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDR 120

Query: 121 VQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL 146
            QRQ    +  ++      F SP  L  +SP+  +  + L
Sbjct: 121 TQRQKLTDMPLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of ClCG05G022640 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTH 64
          +  +I GPRPSPL +HKDS  I+KP                  R+PV+IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

[Close]

BLAST of ClCG05G022640 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-06
Identity = 39/100 (39.00%), Postives = 49/100 (49.00%), Query Frame = 0


Query: 4   PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYT 63
           P+S    GP+P+PL +  DS ++I+KP L                         PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP 80
            +P+IIHTHP +FM LVQRLTG T     S     S S P
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEP 105

[Close]

BLAST of ClCG05G022640 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 104/151 (68.87%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENECGDQKQSLVQRQTNPSLLRY 120
           GF PPPP           P+RN NDN+S+S   SEE+ NE          +Q+N S+L+Y
Sbjct: 61  GFNPPPPQ----------PERNSNDNDSTSGVTSEEDVNE----------KQSNCSVLKY 120

Query: 121 SSDLTPPFSSPALLNSLSPSFMEFLKALPEF 149
           SSD+T PFSSPA L+SLSPSFM+FLKALPEF
Sbjct: 121 SSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of ClCG05G022640 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.3e-44
Identity = 104/151 (68.87%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPSLPLPLSLSLPDRNFNDNESSS---SEEEENECGDQKQSLVQRQTNPSLLRY 120
           GF PPPP           P+RN NDN+S+S   SEE+ NE          +Q+N S+L+Y
Sbjct: 61  GFNPPPPQ----------PERNSNDNDSTSGVTSEEDVNE----------KQSNCSVLKY 120

Query: 121 SSDLTPPFSSPALLNSLSPSFMEFLKALPEF 149
           SSD+T PFSSPA L+SLSPSFM+FLKALPEF
Sbjct: 121 SSDVTTPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of ClCG05G022640 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 107/152 (70.39%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKS EINGPRPSPLLIH  SRLIRKP QLRQP+IIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGFTPPPPPSLPLPLSL-SLPDRNFNDNESSSSEEEENECGDQKQSLVQRQTNPSLLRYS 120
           TG  PPPP  LPLP +  SL +RN NDN+SSS    E       + + ++Q+N S+L+YS
Sbjct: 61  TGCNPPPP--LPLPSAKPSLSERNLNDNDSSSGVTTE-------EDINEKQSNCSVLKYS 120

Query: 121 S-DLTPPFSSPALL-NSLSPSFMEFLKALPEF 149
           S D+T PFSSPA L +SLSPSFM+FLKALPEF
Sbjct: 121 SHDVTTPFSSPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of ClCG05G022640 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.1e-38
Identity = 106/170 (62.35%), Postives = 115/170 (67.65%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KSC+INGPRPSPLLIHK SRLIRK  PQLRQP+IIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPSLPLPLSLSLPDRNFN---DNESSSSEEEENECGDQ-------KQSLVQR 120
           LTGFTPPPPP           DRN N   DN+SSS   EE  CGD        K+   Q 
Sbjct: 61  LTGFTPPPPP------HADDSDRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQS 120

Query: 121 QTN----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF 149
           Q++          P+ LRY+ D T  F+SP L NSLSPSFMEFLK LPEF
Sbjct: 121 QSHSFLADVPLFTPAGLRYAPDAT-SFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of ClCG05G022640 vs. ExPASy TrEMBL
Match: A0A6P6V8N0 (VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=LOC113717710 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-17
Identity = 75/191 (39.27%), Postives = 98/191 (51.31%), Query Frame = 0


Query: 9   INGPRPSPLLIHKDSRLIRKP---------------------QLRQPVIIYTHSPKIIHT 68
           INGPRPSPL I+KDS +I+KP                     Q RQPVIIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAATEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  HPKDFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNF----NDNESSSSEEEENECGDQKQ 128
            PKDFMALVQ+LTGF+        +       D+       DN+SSS   ++   GD   
Sbjct: 75  KPKDFMALVQKLTGFSRSEEQI--VEAESKRDDQTITISQEDNDSSSVTSDDKYEGDNAS 134

Query: 129 SLVQRQT------NPSLLRYSSDL---TP-----------------PFSSPALLNSLSPS 149
            +++  +      N  L  Y +D+   TP                  F+SP +++SLSPS
Sbjct: 135 DVIKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLSPS 194

[Close]

BLAST of ClCG05G022640 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTG 64
           P P  L ++KDS +I+KP          + R PVIIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of ClCG05G022640 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-11
Identity = 57/160 (35.62%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPK 60
           M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPSLPLPLSLSLPDRNFNDNESSSSEEEENECGDQ-----KQSL 120
           DFMALVQRLTG                +  RN +++ SS   EE N   D       Q  
Sbjct: 61  DFMALVQRLTGLD-------------EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDR 120

Query: 121 VQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL 146
            QRQ    +  ++      F SP  L  +SP+  +  + L
Sbjct: 121 TQRQKLTDMPLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of ClCG05G022640 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTH 64
          +  +I GPRPSPL +HKDS  I+KP                  R+PV+IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

[Close]

BLAST of ClCG05G022640 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-10
Identity = 43/100 (43.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 4   PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYT 63
           P+S  I GPRP PL +  DS ++I+KP L                         PVIIYT
Sbjct: 6   PRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYT 65

Query: 64  HSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP 80
            SP+IIHTHP +FM LVQRLTG T     S     S S P
Sbjct: 66  VSPRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAP 105

[Close]

BLAST of ClCG05G022640 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-08
Identity = 39/100 (39.00%), Postives = 49/100 (49.00%), Query Frame = 0


Query: 4   PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYT 63
           P+S    GP+P+PL +  DS ++I+KP L                         PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLPLSLSLP 80
            +P+IIHTHP +FM LVQRLTG T     S     S S P
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEP 105

The following BLAST results are available for this feature:

BLAST of ClCG05G022640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893302.1	7.8e-60	82.69	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
XP_008466850.1	2.7e-44	68.87	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
XP_022150646.1	6.4e-38	62.35	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
KGN52621.2	3.2e-29	77.45	hypothetical protein Csa_008052 [Cucumis sativus]	[more]
KAG7013019.1	2.1e-25	51.97	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of ClCG05G022640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	2.4e-11	56.45	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	5.9e-10	35.63	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	2.9e-09	42.67	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	1.0e-06	39.00	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of ClCG05G022640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFH5	1.3e-44	68.87	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	1.3e-44	68.87	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KT78	2.1e-42	70.39	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A6J1DC48	3.1e-38	62.35	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6P6V8N0	3.0e-17	39.27	VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=...	[more]

BLAST of ClCG05G022640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	1.7e-12	56.45	VQ motif-containing protein	[more]
AT1G68450.1	4.2e-11	35.63	VQ motif-containing protein	[more]
AT3G18690.1	2.1e-10	42.67	MAP kinase substrate 1	[more]
AT1G21326.1	4.6e-10	43.00	VQ motif-containing protein	[more]
AT1G21320.1	7.4e-08	39.00	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 39..66 e-value: 5.3E-12 score: 45.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..119
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 7..147
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 7..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G022640.1	ClCG05G022640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007276	gamete generation
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding