ClCG05G021190 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G021190
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr05: 33203386 .. 33206138 (+)
RNA-Seq Expression	ClCG05G021190
Synteny	ClCG05G021190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCACGTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGTATTCTGCTCCCAGTGATCGTAGGAACAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGAAAACCTAAATTTACAAGTCTTATATATACTTATTAAATACTACTTAGTTTCTCTTTGTACTTATATGTCAACTCTTAAAGTGTTTATACTGTACAATGCGAAGTCCAGTTACTATAGAAACCTAATTTGATTAAATTACTTTCGTGGTTAAAGAATTATAGGAGGTCCTGATTGATTTTTATTTATTTAATTTCCAAGAAAAAAAGGCTTCAAAGTTACTTTCAGTGAAGACGATCATTAGTTAGGAGATACCATACCCACTTTTAATTACTATTTTAATTGAATACTCAATAAATTATGAGAAATTAGTAGAAAAGTGGAAATAGAGACAAGCTGAAAGAGAAATTAAAACAAAAAAGAATTGGTCGAAAAGTGGAAATAGAATCGATTAGTGGACTAAAATAATAATCGTTTAGTGGAGTATTGGGCCAACAAGACACAGCCTGTGCTCATTCCACCGACAGGAGAAGGAGGTCACACTGATCTGTGAAACCCAAACTCACGCGATGGCCCAATGAATCCTTCCCTTTGAACCGAACCAATCTTCAACCAACAAAATACCCCCGTTCAGTATACAATCTTGCACAACCAAGCCCAGCATAAGTTTAGACTCCTGCAATTGGATTCCATTTTTTAATAAATTTCTTCTTAAAAACATCTTTTACTCCATGTAATTCGATTTTCTAGGATTTTCAAATTTTCTAATCGATTCTAAGAAGTTGCGCAACTTATGGCTTAGATTATGAGTCCTTTATTATAGAGTAAAATTTGTATATAATATTAGAATTACCAACGGTGTCCAATATGTGGTAAGAAAGATCCCAAATGATCCCAAATTTAAGTTAATAAAATGTGAACTTTCGAGGGAGAGAAATGTTGGTTGGCAAATTGACAAAATGCCCTCCTCTCACTTTATTTTTTTTAAAAAAAAACTTAATTACTTTTCTACCCTTTCCAACTTATTACATACCATTACCACAATTACTAATAAATTAACCAAACTATTTCCATAATTTCTAATAAATTAACCAACTTAAAAAAAAGTACTCTACATAGTCGTGATTTGTCAATACATTACGTAAAAAGTATTGAATATCTAGATCATTTCTTTTCATCTTTTCGAATTAGCTATGTTGACAACATCTTCATCATTCTCAAATTCCAAATAACGATACTTAGCATCTAGTTCATACCTCTTCATACCCTCTACGTCATTCAAATATTTTCTTCTTAGTCTGACATGGGTAGCATCCTATCTAGTGTTTCAACTCCGTAACCAGATCAAACTCTCTCCACCCAAATGACATTTTCGTGTCCAGTAAACTAAAACTAATAGTATCTCTCCTAGTCTCCCTAACCTCCCTAAGGAGAATATAATGAATTAAGGGTCCATTGAACATAATGTTCGCATCTAATATGGCCCAAAACAAGTTTGCCTAAACATAGCTAATTGGGTAGGAGTTAATTTTTTCCTAAGGCTAGTTTGATCTTTTCCTAAGTGGGCACAGTAAGTTAGGGCAGTAGAAAAAATGGTCATTATGAGAGATTTTGGTAACCAAATCCATCATACCTACATTATTAATGCAAATAATATACATTAATAAATAAAATATTTAGCCAACAAAAAAAAAATCTAAAATAAAAGAATAAAGGAAATCCTGGTGAATACCTAACTCAGGTAGTGACCGGGCCAAAAAATAGAGAGCTATTATCGATTGAGCCCAGTTAGAACCTGGCCTGGGTAGTGATTGGGCCAAAAAACAGAGAGCATTTACCGACTAGCCTAATCACTACCTGACCAGGGTAAAGATTGAGCCAAATCCCACCCCTTGGTTTACTATTATATTAGACTCGCCCAAGGTAAAGACCGGGCCAAACCTACTCTGGGTCCCCACCTATGTCGCCCGGCTAATACTCGACCAGGGTAAAGATCAGGTCAATATCCTCCTATTGTGTTAGGCTTGGTCAAGACCCGTCCAGAGTAAGACCAGGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCAAGACTGGCTCAAGGTAAGATCGGGCCAAAAAACAGAGAGACCCCCACCTACCTCGCTCGGTCAATACCCACCTAGGGCAAGACCAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGGGTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA

mRNA sequence

ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCACGTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGCTTGGTCAAGACCCGTCCAGAGTAAGACCAGGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCAAGACTGGCTCAAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGGGTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA

Coding sequence (CDS)

ATGGCTCTACGACATGTTCCTCTTCTCTTCTTCCTTTTAACTTTGGATTCTTCTTCTACAATTATGGCAACGTCAAGAGCCATGCTTGGCATAACACCTACTCCAACCACGTCTGCTGAAGTACCTACTCCCACAATTGATGCAAAACCTTCACCACCAGAGTCATCTGAAGCTACGTTCATTGCAAGATCTGACTCGTCAATTTCCATGCCTCCAAGTTTTGGTGACTTTGTTGCTTTTGAGGTTCCTAGTGAAATAGGAGCAAATCCACCAATGCCTAATTGGGTCATTCGAAGTTGTAAGCCTAAAGGTCGAATGAGGCTTGGTCAAGACCCGTCCAGAGTAAGACCAGGCCAAACTTACTCCGAGGCGCCCACCAATCTCACCCCGACCAAGGCAAAGACCAGGCCAACATCCTCCTATAGTGTTAGGCCCGGTCAAGACTGGCTCAAGGCCAAAAAACAGAGAGTTCCCCAACTATCTCACCTGGTCTGTACCCGACCAGGGAAAGGACTAGGCGTACGCTTCCCCCAGTCTATACCCGATGAGGGTTGGGACCGGGAGCCACTTTCGTCTTCCCCAAAGTTACACCCGACCAATATCCGGTTGTCTTCTGATGAAGCCCGATCAAGTATTCATCGATTTTCATAA

Protein sequence

MALRHVPLLFFLLTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKPSPPESSEATFIARSDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSRVRPGQTYSEAPTNLTPTKAKTRPTSSYSVRPGQDWLKAKKQRVPQLSHLVCTRPGKGLGVRFPQSIPDEGWDREPLSSSPKLHPTNIRLSSDEARSSIHRFS

Homology

[Close]

BLAST of ClCG05G021190 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-26
Identity = 79/120 (65.83%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPES 60
           MAL   PLLFFL   L L SSST MATSRAML I PTPT S + PT  +DAKP  S P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSR 115
           SEAT +A    SS SMPPSFGDFVAFEVPSE+ ANPP P+W+IRSCKPKGRMR      R
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

[Close]

BLAST of ClCG05G021190 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-25
Identity = 79/118 (66.95%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 1   MALRHVPLLFF---LLTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-S 60
           MALRH PLLFF   +L L SSST MATSRAML I          PTPTIDAKPSPP + S
Sbjct: 1   MALRHAPLLFFFLLVLALASSSTTMATSRAMLFIE---------PTPTIDAKPSPPPTVS 60

Query: 61  EATFIARSDSSI--SMPPSFGDFVAFEVPSEIG-ANPPMPNWVIRSCKPKGRMRLGQD 112
           EAT +A   SS+  SMPPSFGDFVAFEVPSE+  ANPPMP+W+IRSCKPKGRMR  ++
Sbjct: 61  EATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVSTANPPMPDWMIRSCKPKGRMRSSEN 109

[Close]

BLAST of ClCG05G021190 vs. NCBI nr
Match: KAG6573847.1 (hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-09
Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 22  MATSRAMLGI-----------TPTPTTSAEVPTP-----TIDAKPSPPESSEATFIARSD 81
           MATSRAML +           +P+  +   +PTP     T D + S P + EAT +  S 
Sbjct: 1   MATSRAMLNVVSSDLAMISNSSPSTVSFPVIPTPSTSTTTFDGE-STPSTYEATTVVGSG 60

Query: 82  SSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSR 115
           S+I M P+  DFVAFEVP+ + A PPM N VIRSCKPKGRMR      R
Sbjct: 61  SAIFMSPTSNDFVAFEVPNGMDAKPPMSNRVIRSCKPKGRMRYSAPSDR 108

[Close]

BLAST of ClCG05G021190 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.2e-27
Identity = 79/120 (65.83%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MALRHVPLLFFL---LTLDSSSTIMATSRAMLGITPTPTTSAEVPTPTIDAKP--SPPES 60
           MAL   PLLFFL   L L SSST MATSRAML I PTPT S + PT  +DAKP  S P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SEATFIAR-SDSSISMPPSFGDFVAFEVPSEIGANPPMPNWVIRSCKPKGRMRLGQDPSR 115
           SEAT +A    SS SMPPSFGDFVAFEVPSE+ ANPP P+W+IRSCKPKGRMR      R
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

[Close]

BLAST of ClCG05G021190 vs. ExPASy TrEMBL
Match: A0A0A0KRI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 64/97 (65.98%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 22  MATSRAMLGITPTPTTSAEVPTPTIDAKPSPPES-SEATFIARSDSSI--SMPPSFGDFV 81
           MATSRAML I          PTPTIDAKPSPP + SEAT +A   SS+  SMPPSFGDFV
Sbjct: 1   MATSRAMLFIE---------PTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFV 60

Query: 82  AFEVPSEIG-ANPPMPNWVIRSCKPKGRMRLGQDPSR 115
           AFEVPSE+  ANPPMP+W+IRSCKPKGRMR      R
Sbjct: 61  AFEVPSEVSTANPPMPDWMIRSCKPKGRMRYSAPSDR 88

The following BLAST results are available for this feature:

BLAST of ClCG05G021190 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09256.1	1.3e-26	65.83	hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa]	[more]
KAE8648853.1	1.8e-25	66.95	hypothetical protein Csa_008932 [Cucumis sativus]	[more]
KAG6573847.1	4.1e-09	45.87	hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG05G021190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G021190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFX3	6.2e-27	65.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KRI3	2.8e-19	65.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1	[more]

BLAST of ClCG05G021190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G021190.2	ClCG05G021190.2	mRNA