ClCG05G020120 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G020120
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr05: 32349576 .. 32350436 (-)
RNA-Seq Expression	ClCG05G020120
Synteny	ClCG05G020120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGAAAAGAATTTTCAGAAAGAAGAAGAGATGCAGGCAGTGAAGATTATGTACGTCAGAGTCTAGCAGTGAAAGATCAATTTTTTTTGGAAAACCGTTCGCATTGTCTGAAAATGGCGGAGGAGGGTAGGATCAGAAAGTGATACAGCAACCACTAGAGCCCAAAAGAAGCTATAAAAAAAAAAAAATGAAAAATGAAAAAAGAAAAAAAAAATCCAGAGGTTCGAACAATGTAAGGGGAAAAAGATGGAAGAAAGAAAGTGAAATAGTTTAAAGGGGAAGGGAAGGGAAGGGAAGGTAAGAGGTGAGAGGAGAAGGGGTAGTTGAGGAATTAGAAGGATATGTGTTATAACTGTAGAGAGTTAACTGCTAGGACAACAACCACTATCATTTTCCTTAGTCTTCACTACACACCAGCACAGGCGGTTGCGTCTGTGAAACTTTTATTGTCGTCTTTCCCGAAATGCCCTTCTTCCCTTCCTGTCCTCACTGTGGTGTGCTTTGGGGAGATATTACCATAGTACCCCTGTAGGGGGCATAATACACGTAGAGTTGTTTTCTTGAATACCACGGTATCCGTATTATGGAATCATGGAGTAGCGTATCGCGATAATATCACATCCAAGAACGAGAATATACAGCAAAGGAAGCACGTGATGTGGAATCGAATCGGGTTCGTGTTGGTGTACGCTTATGATACACACGGATGAGTGGATGATTGAGAATGCATGAAAGCCAAGGTTAATGATGGAATGGCAAGGTTTGTTTTTTCAAAAGAAGTGGTATATGGTAGCGTGGTAAGGAATGCACGTGAGGGAAGGAGGCAAGTGGCGGAAGTTGGGAAAGGGATTATTTGA

mRNA sequence

ATGTTGGGAAAAGAATTTTCAGAAAGAAGAAGAGATGCAGGCAGTGAAGATTATGTACGTCAGAGTCTAGCAGTGAAAGATCAATTTTTTTTGGAAAACCGTTCGCATTGTCTGAAAATGGCGGAGGAGGGTAGGATCAGAAAAGAGTTAACTGCTAGGACAACAACCACTATCATTTTCCTTAGTCTTCACTACACACCAGCACAGGCGGTTGCGTCTGTGAAACTTTTATTGTCGTCTTTCCCGAAATGCCCTTCTTCCCTTCCTGTCCTCACTGTGTACCCCTGTAGGGGGCATAATACACGTAGAGTTGTTTTCTTGAATACCACGGTATCCGTATTATGGAATCATGGAGTAGCGTATCGCGATAATATCACATCCAAGAACGAGAATATACAGCAAAGGAAGCACGTGATGTGGAATCGAATCGGCGTGGTAAGGAATGCACGTGAGGGAAGGAGGCAAGTGGCGGAAGTTGGGAAAGGGATTATTTGA

Coding sequence (CDS)

ATGTTGGGAAAAGAATTTTCAGAAAGAAGAAGAGATGCAGGCAGTGAAGATTATGTACGTCAGAGTCTAGCAGTGAAAGATCAATTTTTTTTGGAAAACCGTTCGCATTGTCTGAAAATGGCGGAGGAGGGTAGGATCAGAAAAGAGTTAACTGCTAGGACAACAACCACTATCATTTTCCTTAGTCTTCACTACACACCAGCACAGGCGGTTGCGTCTGTGAAACTTTTATTGTCGTCTTTCCCGAAATGCCCTTCTTCCCTTCCTGTCCTCACTGTGTACCCCTGTAGGGGGCATAATACACGTAGAGTTGTTTTCTTGAATACCACGGTATCCGTATTATGGAATCATGGAGTAGCGTATCGCGATAATATCACATCCAAGAACGAGAATATACAGCAAAGGAAGCACGTGATGTGGAATCGAATCGGCGTGGTAAGGAATGCACGTGAGGGAAGGAGGCAAGTGGCGGAAGTTGGGAAAGGGATTATTTGA

Protein sequence

MLGKEFSERRRDAGSEDYVRQSLAVKDQFFLENRSHCLKMAEEGRIRKELTARTTTTIIFLSLHYTPAQAVASVKLLLSSFPKCPSSLPVLTVYPCRGHNTRRVVFLNTTVSVLWNHGVAYRDNITSKNENIQQRKHVMWNRIGVVRNAREGRRQVAEVGKGII

Homology

[Close]

BLAST of ClCG05G020120 vs. NCBI nr
Match: KGN55222.1 (hypothetical protein Csa_012177 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-36
Identity = 92/118 (77.97%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 2   LGKEFSE---RRRDAGSEDYVRQSLAVKDQFFLENRSHCLKMAEEGRIRKELTARTTTTI 61
           +GKEF E   RRRDAGS DYVRQSLAVKDQFFLENRSHCLKM EEGRIRKELTARTTTTI
Sbjct: 1   MGKEFPEERRRRRDAGSVDYVRQSLAVKDQFFLENRSHCLKMVEEGRIRKELTARTTTTI 60

Query: 62  IFLSLHYTPAQAVASVKLLLSSFPKCPSSLPVLTVYPCRGHNTRRVVFLNTTVSVLWN 117
           IFLSLHYTPAQ VASVKLLLSSFPK PS  P               VFLNTTVSVLWN
Sbjct: 61  IFLSLHYTPAQTVASVKLLLSSFPKYPS--PDRRFREYYESTPVEFVFLNTTVSVLWN 116

[Close]

BLAST of ClCG05G020120 vs. ExPASy TrEMBL
Match: A0A0A0L3N2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641560 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36
Identity = 92/118 (77.97%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 2   LGKEFSE---RRRDAGSEDYVRQSLAVKDQFFLENRSHCLKMAEEGRIRKELTARTTTTI 61
           +GKEF E   RRRDAGS DYVRQSLAVKDQFFLENRSHCLKM EEGRIRKELTARTTTTI
Sbjct: 1   MGKEFPEERRRRRDAGSVDYVRQSLAVKDQFFLENRSHCLKMVEEGRIRKELTARTTTTI 60

Query: 62  IFLSLHYTPAQAVASVKLLLSSFPKCPSSLPVLTVYPCRGHNTRRVVFLNTTVSVLWN 117
           IFLSLHYTPAQ VASVKLLLSSFPK PS  P               VFLNTTVSVLWN
Sbjct: 61  IFLSLHYTPAQTVASVKLLLSSFPKYPS--PDRRFREYYESTPVEFVFLNTTVSVLWN 116

The following BLAST results are available for this feature:

BLAST of ClCG05G020120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55222.1	5.1e-36	77.97	hypothetical protein Csa_012177 [Cucumis sativus]	[more]

BLAST of ClCG05G020120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG05G020120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3N2	2.5e-36	77.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641560 PE=4 SV=1	[more]

BLAST of ClCG05G020120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G020120.1	ClCG05G020120.1	mRNA