ClCG05G018950 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G018950
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein RADIALIS-like 3
LocationCG_Chr05: 31229761 .. 31233107 (-)
RNA-Seq ExpressionClCG05G018950
SyntenyClCG05G018950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCACTGATCTGAAATTGATAGTGTTATAGAGACGAGAAGTTGATATTGCGATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGTAATTGAAACGCCCCCACCTTTTTGTTTATTTTTTCCTTTTCCAATTATTATTTTTTGGGTAATGTATTTTTAAAATCCACCTTTGATTATCGTTTGTTTTCTTGATTGAAACAACAAAATTAGCAGTTTAGCACCCAAAATTTTGTTCTCTGTTTTCTAAATGTAGCCAAAGTTTTCCGGAGTATTTCAAGGAAAAACTAATAAAGAAAGTATATAAACTTGTTTATATTGTTTTTTAGTCTAAAAAACACAAATGAAATCAATGCTAGGATTACGGTATTAAATTCAATTGACCTGTCCGTATTTTCAACCATGTTTTCATGAAATTCAATCGACATTTTCATAATATTTTGAGAAAATCCGATGCGAAAAAGTATAAAACAAAATGTCATCAATTTGAGTATATTATAAATGCTTAAAAAACCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTTTTCAAAATTATCTATTCACTCCACCATTTTATTGATATTTTTATCTCCTGGTCTATAAAATTGAGACATTGACATCTTAAATTTTGACTATTATTTACAAATCTTCATTCATAATGGTTGATTTTCTAAACTGCTTAAGAGATGATTATTTTCTAACCTCCAACTTTTTTAGAAAGTTAAATAGTGTAAATATCACGTAGAACTACATATATTTTGGTAAATTTGGAGCAAAAGTTAGTGGATTAAGCATTAGGTTAATTAAAATCCATGGATTATTTATTTAAATTGTAAATTATAATATAATTTAATCTGAGTAGTTTTAACAAGAATCTGTTGTGATTAATGCAGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACAAAAGTTCTATCTTTCCATTAACTATTTTCAACTAAAACTTTCAAGGTCCAACCACCAAGTGTTAATGAAATATGAAGG

mRNA sequence

AACCACTGATCTGAAATTGATAGTGTTATAGAGACGAGAAGTTGATATTGCGATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGTCTAAAAAACACAAATGAAATCAATGCTAGGATTACGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACAAAAGTTCTATCTTTCCATTAACTATTTTCAACTAAAACTTTCAAGGTCCAACCACCAAGTGTTAATGAAATATGAAGG

Coding sequence (CDS)

ATGGGGTCTGGATCGAATTGGACGGCAAAGCAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGTGGAGGAAGTCAAACGCCACTACGAAAGGCTCGTTGAAGATGTCAACAAGATCGAGACCGGCCAAGTTCCTTTCCCTAATTACAGAAGATCCGGACCTGCCGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGTCTAAAAAACACAAATGAAATCAATGCTAGGATTACGGATGAGGAGTCTACAATTGCACTGAAGTACGAATGTAGGAAGACAAAAGTTCTATCTTTCCATTAA

Protein sequence

MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQVPFPNYRRSGPAGRGFCFVDEEQRLKNTNEINARITDEESTIALKYECRKTKVLSFH
Homology
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BLAST of ClCG05G018950 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-42
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGS+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSHWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
          TGQVPFPNYRRSGPA RGFCFVDEEQR+++
Sbjct: 61 TGQVPFPNYRRSGPAVRGFCFVDEEQRMRS 90

[Close]
BLAST of ClCG05G018950 vs. NCBI nr
Match: XP_008465612.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK19652.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 7.8e-42
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQR 88
          TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of ClCG05G018950 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 3.6e-39
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
          TGQVPFPNYRRS PA RGF F+D+EQR+++
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRS 90

[Close]
BLAST of ClCG05G018950 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 0 

Query: 1   MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKI 60
           MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
           ETGQVPFPNYR+S    RGFCF+DEE+R+++
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRS 116

[Close]
BLAST of ClCG05G018950 vs. NCBI nr
Match: XP_022941099.1 (protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo] >KAG6608538.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037861.1 Protein RADIALIS-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 7.1e-35
Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
          +GQVPFP Y +S PAG GF FVDEEQR+++
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRS 90

[Close]
BLAST of ClCG05G018950 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
           VPFPNYR SG    G     EE+R++N
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRN 96

[Close]
BLAST of ClCG05G018950 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M S ++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+ EEV+RHYE L+ DVN IE
Sbjct: 6  MSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIE 65

Query: 61 TGQVPFPNYRRSG 74
          +G+ P PNYR +G
Sbjct: 66 SGRYPHPNYRSNG 78

[Close]
BLAST of ClCG05G018950 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 2  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIET 61
          GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 62 GQVPFPNYRRSG 74
          G+VPFPNYR +G
Sbjct: 66 GKVPFPNYRTTG 77

[Close]
BLAST of ClCG05G018950 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-24
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 0 

Query: 2  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIET 61
          GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10 GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62 GQVPFPNYR-RSGPAGRGFCFVDEEQRLKN 91
          G VPFP+Y+  +G + RG    DEE+R+++
Sbjct: 70 GHVPFPDYKTTTGNSNRG-RLRDEEKRMRS 97

[Close]
BLAST of ClCG05G018950 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.8e-24
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 5  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYR 71
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of ClCG05G018950 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.8e-42
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQR 88
          TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of ClCG05G018950 vs. ExPASy TrEMBL
Match: A0A1S3CPA0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.8e-42
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQR 88
          TGQVPFPNYRRSGPA RGFCF+D+EQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of ClCG05G018950 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-39
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKT EEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
          TGQVPFPNYRRS PA RGF F+D+EQR+++
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRS 90

[Close]
BLAST of ClCG05G018950 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.4e-38
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 0 

Query: 1   MGS-GSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKI 60
           MGS GSNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKT EEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
           ETGQVPFPNYR+S    RGFCF+DEE+R+++
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRS 116

[Close]
BLAST of ClCG05G018950 vs. ExPASy TrEMBL
Match: A0A6J1FM85 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.4e-35
Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKT EEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
          +GQVPFP Y +S PAG GF FVDEEQR+++
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRS 90

[Close]
BLAST of ClCG05G018950 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-28
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSGPAGRGFCFVDEEQRLKN 91
           VPFPNYR SG    G     EE+R++N
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRN 96

[Close]
BLAST of ClCG05G018950 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 0 

Query: 2  GSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIET 61
          GSGS WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10 GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62 GQVPFPNYR-RSGPAGRGFCFVDEEQRLKN 91
          G VPFP+Y+  +G + RG    DEE+R+++
Sbjct: 70 GHVPFPDYKTTTGNSNRG-RLRDEEKRMRS 97

[Close]
BLAST of ClCG05G018950 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-25
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 5  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYR 71
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of ClCG05G018950 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-25
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 5  SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKTVEEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYR 71
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of ClCG05G018950 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-22
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTVEEVKRHYERLVEDVNKIE 60
          M S S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+ EEVKRHY+ LVED+  IE
Sbjct: 6  MSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

Query: 61 TGQVPFPNYR 71
             VP P Y+
Sbjct: 66 QDLVPLPKYK 75

The following BLAST results are available for this feature:
BLAST of ClCG05G018950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905673.13.5e-4293.33protein RADIALIS-like 3 [Benincasa hispida][more]
XP_008465612.17.8e-4295.40PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS... [more]
XP_004147867.13.6e-3988.89protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_0... [more]
XP_022138113.11.5e-3783.52protein RADIALIS-like 3 [Momordica charantia][more]
XP_022941099.17.1e-3581.11protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-li... [more]
BLAST of ClCG05G018950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JVB81.3e-2663.64Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
Q6NNN02.0e-2465.75Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
Q58FS32.0e-2469.44Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
Q9SIJ52.6e-2461.11Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
Q1A1735.8e-2474.24Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
BLAST of ClCG05G018950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D7Z03.8e-4295.40Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CPA03.8e-4295.40protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1[more]
A0A0A0LGK81.8e-3988.89SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 S... [more]
A0A6J1CC557.4e-3883.52protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1[more]
A0A6J1FM853.4e-3581.11protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1[more]
BLAST of ClCG05G018950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G39250.18.9e-2863.64RAD-like 1 [more]
AT2G21650.11.9e-2561.11Homeodomain-like superfamily protein [more]
AT1G75250.14.1e-2574.24RAD-like 6 [more]
AT1G75250.24.1e-2574.24RAD-like 6 [more]
AT1G19510.11.9e-2264.29RAD-like 5 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 3..55
e-value: 4.5E-7
score: 39.5
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 5..53
score: 6.016631
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 6..53
e-value: 6.26922E-6
score: 38.7106
NoneNo IPR availableGENE3D1.10.10.60coord: 1..66
e-value: 1.3E-23
score: 84.6
NoneNo IPR availablePANTHERPTHR43952:SF52MYB FAMILY TRANSCRIPTION FACTORcoord: 1..90
IPR044636Transcription factor RADIALIS-likePANTHERPTHR43952MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 1..90
IPR017884SANT domainPROSITEPS51293SANTcoord: 2..57
score: 10.746236
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 6..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G018950.1ClCG05G018950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003700 DNA-binding transcription factor activity