ClCG05G014925 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G014925
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein FAR1-RELATED SEQUENCE
Location	CG_Chr05: 25974426 .. 25976178 (+)
RNA-Seq Expression	ClCG05G014925
Synteny	ClCG05G014925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTTGTGTTTATGAAGAATTCAATGAAGTTGAAGGGGAGAGGGTTTTTATTGTTCTGTATAGATTTAACCGTAATGGCAGGGAGGTCATTGTTGTACCGCAGAGAATGACGGAGGTTGGACAGAACTTGACAACGAAAGACTTCGCTAACCACACAGTGGGGAAGTGCGTTTGAAAATTCTGGGTTTTTCTTGGAGGTTGCGATTTCTTGAGAGTTTACAATCCATGCGCCTCTTTGAAAGGTGGGCAACAAACTCCCATTCCCACTCCCACTCTCATGTTTATTATTATTTTTTGAGGGAAACTTAGGTGCTGGCGGGGGGCTGTCTCCATCTTTTGCAGCCCAACCATGTGGCACAAAACTATTTGACAAGATTTTATCATTTTATAATACAAGATTCTTACTCATTTCTAACGTTTGTTAATGTCTCCACTTTCTTTTTTTTTTTCTTCATAAAAATTGGTGAGCCGGGTTGGAGAAGAAATAGAAATAGTATAAGATATTTTTCCTTATTTTTACCTCTTTCAAGCAAAACTTTTCATGTTCTTTTGATTTCTCAAATTAAAAAATTTTTGCCGGCGCAAAACTTCTTGATATGAATGGAGGAACCTCATTCATGCAATATGAACATAAAAAATGAGCCATACATGTTGTCCAAGTTTATACTAAGCAAAGAAGAATTATGTGAAGTCAAGTGGAATTTATGAAGAATTAAGCTTCATTTAATGAACAAAGCCTTCAAGATACTTCAAATGGGATATCATTTACTCTTGGATGGTTACAAATGCATGGAATATGAATGAAAAATACTAATCTCAGATTTATTGTATTTGTTAAATGTATTTTTCAGTTTTGAGTCATTTTATGTGTTTTTATGTTACAATTTGATCATGGTCATTAATTATGAGTGTTACAACATTTTAGATGCCTCATAGAATATCTAAAGTTATATTTTGAGGCCTATATAATGTCATGTAATTGTTCAAACAAGGAGACTGGAAAGAGTAGAAAAAAGAGCCTTTGAGCTTTATTTTAGCCTTTAGTTATGTTTCTTTTGCAATTCTATGGTGTTTAGGTTGCATGTTCAGAATCATTCAAGCTTGACTTGATCGATCTTGCTTGTTGAGTGATTTGAAGATCAAGGTTCGATGGGAGTTGCAAGCTTTGTCTGATTCATGGTTTTGTCGATTGTCTAAGTAATCAGTCGTCTAGCCATTCTTAGGGGCTGAGATTATCTTGGTTTGGGGTGTTTGAGTTTGAGATCTAAAGGTCTTGTTTGTCAATATGGTTGTTAAATCCAAATCCCCGAATGCTACTTATCATTTCTTTAGTTAGGTTGATTTCTCAAATTAAAAACTTCTTGTCGATGCCTTTCTTAGGTGTTTTATCAGCATTTAAATGGCGTACTTCATCCCATTTCCATGTGACTTCATTTTGGTTTCTCATTCCTGAACTAAAACAGATTATCTTCTCGTCGATTCGTTGTTGATGGCCATATTTTTTCTCTTTTAGCGGATCATCATCGCCATCTATTTCAGTATCAAGAACAGGATGTAAAGCTAATATAGCATGCTTGCTTGGAAAGAATGGTAAGTACAAAATAGTGTCATTTAATGGATATCACAATCACGACCTTGTTAGAACACCAATGAAGCACATTTTAAGAGTCAATAGAAGCATATCTCGTGCCCAAAAGGCTCTAGCTTATGATGCAGACAGATCAGGAATTTCAACAAAGCAACCTTGA

mRNA sequence

ATGGAGTTTTGTGTTTATGAAGAATTCAATGAAGTTGAAGGGGAGAGGGTTTTTATTGTTCTGTATAGATTTAACCGTAATGGCAGGGAGGTCATTGTTGTACCGCAGAGAATGACGGAGGTTGGACAGAACTTGACAACGAAAGACTTCGCTAACCACACAGTGGGGAACGGATCATCATCGCCATCTATTTCAGTATCAAGAACAGGATGTAAAGCTAATATAGCATGCTTGCTTGGAAAGAATGGTAAGTACAAAATAGTGTCATTTAATGGATATCACAATCACGACCTTGTTAGAACACCAATGAAGCACATTTTAAGAGTCAATAGAAGCATATCTCGTGCCCAAAAGGCTCTAGCTTATGATGCAGACAGATCAGGAATTTCAACAAAGCAACCTTGA

Coding sequence (CDS)

ATGGAGTTTTGTGTTTATGAAGAATTCAATGAAGTTGAAGGGGAGAGGGTTTTTATTGTTCTGTATAGATTTAACCGTAATGGCAGGGAGGTCATTGTTGTACCGCAGAGAATGACGGAGGTTGGACAGAACTTGACAACGAAAGACTTCGCTAACCACACAGTGGGGAACGGATCATCATCGCCATCTATTTCAGTATCAAGAACAGGATGTAAAGCTAATATAGCATGCTTGCTTGGAAAGAATGGTAAGTACAAAATAGTGTCATTTAATGGATATCACAATCACGACCTTGTTAGAACACCAATGAAGCACATTTTAAGAGTCAATAGAAGCATATCTCGTGCCCAAAAGGCTCTAGCTTATGATGCAGACAGATCAGGAATTTCAACAAAGCAACCTTGA

Protein sequence

MEFCVYEEFNEVEGERVFIVLYRFNRNGREVIVVPQRMTEVGQNLTTKDFANHTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADRSGISTKQP

Homology

[Close]

BLAST of ClCG05G014925 vs. NCBI nr
Match: XP_021818770.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Prunus avium])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 59  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQK 118
           S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQK
Sbjct: 93  SPSYSLPISRVGCEAHMICQLQKNGKFKIVSFNASHNHDLIKAPMKHLLRVNRCISRAQK 152

Query: 119 ALAYDADRS 128
           A    AD+S
Sbjct: 153 AYVVGADKS 161

[Close]

BLAST of ClCG05G014925 vs. NCBI nr
Match: XP_021818769.1 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Prunus avium])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 59  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQK 118
           S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQK
Sbjct: 117 SPSYSLPISRVGCEAHMICQLQKNGKFKIVSFNASHNHDLIKAPMKHLLRVNRCISRAQK 176

Query: 119 ALAYDADRS 128
           A    AD+S
Sbjct: 177 AYVVGADKS 185

[Close]

BLAST of ClCG05G014925 vs. NCBI nr
Match: XP_010418903.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Camelina sativa])

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 61  SPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKAL 120
           S S  V+R GC A++AC L +N KYKIVSF   HNH+LVRTPMKH+L+VNR IS +QK  
Sbjct: 135 SYSHPVTRCGCNAHMACYLQENEKYKIVSFEPNHNHNLVRTPMKHLLKVNREISDSQKQH 194

Query: 121 AYDADRSGISTKQ 134
           A+DAD SGIS KQ
Sbjct: 195 AHDADMSGISAKQ 207

[Close]

BLAST of ClCG05G014925 vs. NCBI nr
Match: EOA14722.1 (hypothetical protein CARUB_v10028009mg [Capsella rubella])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-15
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 53  HTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRS 112
           HTV    S P   ++R GC A++ C L K+GKYKIVSF   HNHDLVRTPMKH+L+ NR 
Sbjct: 145 HTVKKSYSQP---ITRCGCNAHMTCYLQKSGKYKIVSFEPNHNHDLVRTPMKHLLKGNRE 204

Query: 113 ISRAQKALAYDADRSGISTK 133
           IS +QK  A DAD SGIS K
Sbjct: 205 ISVSQKQHASDADMSGISAK 221

[Close]

BLAST of ClCG05G014925 vs. NCBI nr
Match: XP_024178689.1 (protein FAR1-RELATED SEQUENCE 5-like [Rosa chinensis])

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-15
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 47  TKDFANHTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHI 106
           +K+    T   G +S S+ V+R GCKA+++C    NGK KIVSF   HNH+L++TPMKH+
Sbjct: 158 SKEGFRKTKTKGETSYSVPVTRVGCKAHMSCYRQNNGKLKIVSFERNHNHELIKTPMKHM 217

Query: 107 LRVNRSISRAQKALAYDADRSGISTK 133
           L++NRS S+AQK  A DA+ SGIS K
Sbjct: 218 LKINRSFSKAQKEHADDAEMSGISAK 243

[Close]

BLAST of ClCG05G014925 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.7e-04
Identity = 22/69 (31.88%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 65  SVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDA 124
           +++R GCKA+++  +  +GK+ +  F   HNH+LV     H LR +R IS   K L    
Sbjct: 144 TITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTL 203

Query: 125 DRSGISTKQ 134
             +G+  ++
Sbjct: 204 QAAGMGPRR 212

[Close]

BLAST of ClCG05G014925 vs. ExPASy TrEMBL
Match: A0A6P5SRI4 (Protein FAR1-RELATED SEQUENCE OS=Prunus avium OX=42229 GN=LOC110760758 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.2e-16
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 59  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQK 118
           S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQK
Sbjct: 117 SPSYSLPISRVGCEAHMICQLQKNGKFKIVSFNASHNHDLIKAPMKHLLRVNRCISRAQK 176

Query: 119 ALAYDADRS 128
           A    AD+S
Sbjct: 177 AYVVGADKS 185

[Close]

BLAST of ClCG05G014925 vs. ExPASy TrEMBL
Match: A0A6P5SPE9 (Protein FAR1-RELATED SEQUENCE OS=Prunus avium OX=42229 GN=LOC110760758 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.2e-16
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 59  SSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQK 118
           S S S+ +SR GC+A++ C L KNGK+KIVSFN  HNHDL++ PMKH+LRVNR ISRAQK
Sbjct: 93  SPSYSLPISRVGCEAHMICQLQKNGKFKIVSFNASHNHDLIKAPMKHLLRVNRCISRAQK 152

Query: 119 ALAYDADRS 128
           A    AD+S
Sbjct: 153 AYVVGADKS 161

[Close]

BLAST of ClCG05G014925 vs. ExPASy TrEMBL
Match: R0EZH3 (Protein FAR1-RELATED SEQUENCE OS=Capsella rubella OX=81985 GN=CARUB_v10028009mg PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 53  HTVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRS 112
           HTV    S P   ++R GC A++ C L K+GKYKIVSF   HNHDLVRTPMKH+L+ NR 
Sbjct: 145 HTVKKSYSQP---ITRCGCNAHMTCYLQKSGKYKIVSFEPNHNHDLVRTPMKHLLKGNRE 204

Query: 113 ISRAQKALAYDADRSGISTK 133
           IS +QK  A DAD SGIS K
Sbjct: 205 ISVSQKQHASDADMSGISAK 221

[Close]

BLAST of ClCG05G014925 vs. ExPASy TrEMBL
Match: A0A3P6BDE8 (FAR1 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC3T20435H PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 67  SRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDADR 126
           +R GCKA ++C L  NG+YKI++F   HNHDLVRTPMKH+++ NR+IS +QK  A DAD 
Sbjct: 154 TRCGCKARMSCYLQSNGRYKIMTFEPNHNHDLVRTPMKHLMKSNRAISISQKEHADDADM 213

Query: 127 SGISTKQP 135
           SGI  KQP
Sbjct: 214 SGIQQKQP 221

[Close]

BLAST of ClCG05G014925 vs. ExPASy TrEMBL
Match: V4KG79 (Protein FAR1-RELATED SEQUENCE (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10019760mg PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 54  TVGNGSSSPSISVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSI 113
           TV N  S P   ++R GCKA++ C L K G+YKIVSF+  HNHDLV+TPMKH+L+ N+++
Sbjct: 27  TVKNSYSQP---ITRCGCKAHMTCYLQKTGRYKIVSFDPNHNHDLVKTPMKHLLKGNQTV 86

Query: 114 SRAQKALAYDADRSGISTK 133
           S AQK  A DA+ SGIS K
Sbjct: 87  SFAQKQHADDAEMSGISAK 102

[Close]

BLAST of ClCG05G014925 vs. TAIR 10
Match: AT4G38180.1 (FAR1-related sequence 5 )

HSP 1 Score: 45.4 bits (106), Expect = 4.1e-05
Identity = 22/69 (31.88%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 65  SVSRTGCKANIACLLGKNGKYKIVSFNGYHNHDLVRTPMKHILRVNRSISRAQKALAYDA 124
           +++R GCKA+++  +  +GK+ +  F   HNH+LV     H LR +R IS   K L    
Sbjct: 144 TITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTL 203

Query: 125 DRSGISTKQ 134
             +G+  ++
Sbjct: 204 QAAGMGPRR 212

The following BLAST results are available for this feature:

BLAST of ClCG05G014925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021818770.1	1.1e-15	63.77	protein FAR1-RELATED SEQUENCE 5-like isoform X2 [Prunus avium]	[more]
XP_021818769.1	1.1e-15	63.77	protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Prunus avium]	[more]
XP_010418903.1	1.8e-15	64.38	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Camelina sativa]	[more]
EOA14722.1	3.1e-15	60.00	hypothetical protein CARUB_v10028009mg [Capsella rubella]	[more]
XP_024178689.1	3.1e-15	52.33	protein FAR1-RELATED SEQUENCE 5-like [Rosa chinensis]	[more]

BLAST of ClCG05G014925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL8	5.7e-04	31.88	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]

BLAST of ClCG05G014925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5SRI4	5.2e-16	63.77	Protein FAR1-RELATED SEQUENCE OS=Prunus avium OX=42229 GN=LOC110760758 PE=3 SV=1	[more]
A0A6P5SPE9	5.2e-16	63.77	Protein FAR1-RELATED SEQUENCE OS=Prunus avium OX=42229 GN=LOC110760758 PE=3 SV=1	[more]
R0EZH3	1.5e-15	60.00	Protein FAR1-RELATED SEQUENCE OS=Capsella rubella OX=81985 GN=CARUB_v10028009mg ...	[more]
A0A3P6BDE8	1.7e-14	60.29	FAR1 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC3T20435H PE=4...	[more]
V4KG79	1.7e-14	56.96	Protein FAR1-RELATED SEQUENCE (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTS...	[more]

BLAST of ClCG05G014925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38180.1	4.1e-05	31.88	FAR1-related sequence 5	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 59..99 e-value: 4.3E-7 score: 30.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G014925.1	ClCG05G014925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding