ClCG05G014820 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G014820
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	photosynthetic NDH subunit of lumenal location 3, chloroplastic
Location	CG_Chr05: 25733535 .. 25734410 (+)
RNA-Seq Expression	ClCG05G014820
Synteny	ClCG05G014820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCCGCCATTCCCAACCTCCCGAAGCTTCAAAACACTCATAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCAACGGCCCTTTGCCTGTGCCTTCTGTTTACAACAGTAAGCTTTTTGATTGAACGAGTTTGCAACTTTCTATTTCTGTTTTTGTTTTCCTTATCCGGGTGCAAGTTGAAATTGGAAAATCTGAGTTGCTTTGGTTAGTTCTATGGTAAGTACTATGGAATTTGTGATGAATTCTTTGTAACAGACATCGCGAACGAGAACACGGGGACTCGGTCATTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAGAAGGAAGAAAATACAGATTGAAGAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTTAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGACTTCGACAACGTTATCTCGGCAGCAGCAGAGGGTGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGGTAAAAGGAAGAGAAGATGCAAAATTTCAGCAAATGTATGCAAAATTTCAAGCTGAAGTACCTTCTTTTGTGTTTTGCAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACACCAATACTTCAAGAAGTCATGGATAGAATGGCATAA

mRNA sequence

ATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCCGCCATTCCCAACCTCCCGAAGCTTCAAAACACTCATAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCAACGGCCCTTTGCCTGTGCCTTCTGTTTACAACAACATCGCGAACGAGAACACGGGGACTCGGTCATTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAGAAGGAAGAAAATACAGATTGAAGAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTTAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGACTTCGACAACGTTATCTCGGCAGCAGCAGAGGGTGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACACCAATACTTCAAGAAGTCATGGATAGAATGGCATAA

Coding sequence (CDS)

ATGGCTCGTCTTGCAAATTTAAACGAGAAATTCTCCGCCATTCCCAACCTCCCGAAGCTTCAAAACACTCATAAGAGACTCAAAATTACTGGGTTTCTCAAGAAACAAACAGATGTCTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATCGCTTCTGCTAACGAGTACTGGCTCAACGGCCCTTTGCCTGTGCCTTCTGTTTACAACAACATCGCGAACGAGAACACGGGGACTCGGTCATTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAGAAGGAAGAAAATACAGATTGAAGAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTTAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTACGACTTCGACAACGTTATCTCGGCAGCAGCAGAGGGTGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAACTTCGAAAAGCTTGAAGATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTATCAACAGACAACACCAATACTTCAAGAAGTCATGGATAGAATGGCATAA

Protein sequence

MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA

Homology

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BLAST of ClCG05G014820 vs. NCBI nr
Match: XP_038899633.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 399.8 bits (1026), Expect = 1.5e-107
Identity = 203/215 (94.42%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLN+KF+AIPNLPKLQNT KRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNQKFTAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNAS EIASANEYWL+GPLPVPSVYNNIANE TGTRSFLKTGIYIANIGTEGRKYRLKK
Sbjct: 61  FGNASLEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISA  EG KQPL+DLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISATEEGAKQPLIDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETE+YYQQTTP+LQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETEAYYQQTTPLLQEVMDRMA 215

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BLAST of ClCG05G014820 vs. NCBI nr
Match: XP_004151964.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus] >KGN57960.1 hypothetical protein Csa_009832 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 2.5e-107
Identity = 205/215 (95.35%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN HKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWL+GPLPVPSV NNI NE TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAA+ EKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

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BLAST of ClCG05G014820 vs. NCBI nr
Match: XP_008454569.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis melo] >KAA0046447.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa] >TYJ97766.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 7.3e-107
Identity = 204/215 (94.88%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN HK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWL+GPLPVPSV NNIANE TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAA+ EKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of ClCG05G014820 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia])

HSP 1 Score: 380.9 bits (977), Expect = 7.0e-102
Identity = 197/218 (90.37%), Postives = 204/218 (93.58%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLN   +KFSAIP LPKLQN  KRLKI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWL+GPLPVPSVYNNIANE TGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAA+GEKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of ClCG05G014820 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.9 bits (964), Expect = 2.3e-100
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLN   EKFSAIP L KLQ T KR KITG L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNA  EIASANEYWL+GPLP+PSVYNNIANE TGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA +GEKQPL DLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of ClCG05G014820 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-66
Identity = 129/220 (58.64%), Postives = 164/220 (74.55%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTD--VSSHQISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL  + K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRK 120
            L    G  +  +A  N +W++GPLP+P +YNNI NE TGTR+F+K G+Y+A+IGT+GR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA  +KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of ClCG05G014820 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 8.9e-15
Identity = 56/181 (30.94%), Postives = 93/181 (51.38%), Query Frame = 0


Query: 39  VSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLN-GPLPVPSVYNNIANENTG-T 98
           V + Q   T R ++  LV+  L G +  +   A+   +  GP P PS       +N+   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 99  RSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 158
           R F   LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 159 DFDNVISAAAEGEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 215
           D + +IS+  + EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of ClCG05G014820 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-11
Identity = 56/187 (29.95%), Postives = 91/187 (48.66%), Query Frame = 0


Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNA--SPEIASANEYWLNGPLPVPSVYNNIA 92
           ++ Q +VS  + S   R ++  LV+  L G +      A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NENTGTRSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           + +   R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDNVISAAAEGEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA  + EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]

BLAST of ClCG05G014820 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 60/221 (27.15%), Postives = 104/221 (47.06%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MA +  L++    +P  P+      RL +      + D ++  +   RR A+  LV+  +
Sbjct: 5   MASMTGLSQGVQ-LPAGPRRAGGRSRLAVV-----RADAAAADVQTGRR-AVLGLVATGI 64

Query: 61  FGNASPEIA---SANEYWLNGPLP----VPSVYNNIANENTGTRSFLKTGIYIANIGTEG 120
            G A  + A   +A    L  P P    +P   N  +++   T   L+   Y+  +    
Sbjct: 65  AGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLN--SDQARDTDLPLRERFYLQPLPPAE 124

Query: 121 RKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDL 180
              R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++  + EK+ L DL
Sbjct: 125 AAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDL 184

Query: 181 ANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
             +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 185 TGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of ClCG05G014820 vs. ExPASy Swiss-Prot
Match: Q0D5P8 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 60/221 (27.15%), Postives = 104/221 (47.06%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MA +  L++    +P  P+      RL +      + D ++  +   RR A+  LV+  +
Sbjct: 5   MASMTGLSQGVQ-LPAGPRRAGGRSRLAVV-----RADAAAADVQTGRR-AVLGLVATGI 64

Query: 61  FGNASPEIA---SANEYWLNGPLP----VPSVYNNIANENTGTRSFLKTGIYIANIGTEG 120
            G A  + A   +A    L  P P    +P   N  +++   T   L+   Y+  +    
Sbjct: 65  AGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLN--SDQARDTDLPLRERFYLQPLPPAE 124

Query: 121 RKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDL 180
              R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++  + EK+ L DL
Sbjct: 125 AAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDL 184

Query: 181 ANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
             +LF   + L+ AAK K+  E E YY  T   L +V+ ++
Sbjct: 185 TGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of ClCG05G014820 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 205/215 (95.35%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN HKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWL+GPLPVPSV NNI NE TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAA+ EKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of ClCG05G014820 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.5e-107
Identity = 204/215 (94.88%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN HK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWL+GPLPVPSV NNIANE TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAA+ EKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of ClCG05G014820 vs. ExPASy TrEMBL
Match: A0A1S3BZP3 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494958 PE=3 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.5e-107
Identity = 204/215 (94.88%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLN KFSAIPNLPKLQN HK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYRLKK 120
           FGNASPEIASANEYWL+GPLPVPSV NNIANE TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAA+ EKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of ClCG05G014820 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.4e-102
Identity = 197/218 (90.37%), Postives = 204/218 (93.58%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLN   +KFSAIP LPKLQN  KRLKI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWL+GPLPVPSVYNNIANE TGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAA+GEKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of ClCG05G014820 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.9e-100
Identity = 193/218 (88.53%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MARLANLN---EKFSAIPNLPKLQNTHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLN   EKFSAIP L KLQ T KR KI G L+KQ +VSSH++SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRKYR 120
           VALFGNAS EIASANEYWL+GPLP+PSVYNNIANE TGTRSFLKTGIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA +GEKQPL DLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of ClCG05G014820 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-67
Identity = 129/220 (58.64%), Postives = 164/220 (74.55%), Query Frame = 0


Query: 1   MARLANLNEKFSAIPNLPKLQNTHKRLKITGFLKKQTD--VSSHQISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL  + K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLNGPLPVPSVYNNIANENTGTRSFLKTGIYIANIGTEGRK 120
            L    G  +  +A  N +W++GPLP+P +YNNI NE TGTR+F+K G+Y+A+IGT+GR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAAEGEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAAA  +KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLEDAAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of ClCG05G014820 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 82.0 bits (201), Expect = 6.3e-16
Identity = 55/180 (30.56%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 39  VSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLN-GPLPVPSVYNNIANENTGTR 98
           V + Q   T R ++  LV+  L G +  +   A+   +  GP P PS      + +   R
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQAR 102

Query: 99  SF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYD 158
            F   LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++ YD
Sbjct: 103 DFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYD 162

Query: 159 FDNVISAAAEGEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRM 215
            + +IS+  + EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 163 LNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of ClCG05G014820 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 82.0 bits (201), Expect = 6.3e-16
Identity = 56/181 (30.94%), Postives = 93/181 (51.38%), Query Frame = 0


Query: 39  VSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLN-GPLPVPSVYNNIANENTG-T 98
           V + Q   T R ++  LV+  L G +  +   A+   +  GP P PS       +N+   
Sbjct: 43  VRAQQSEETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQA 102

Query: 99  RSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYY 158
           R F   LK   Y+  +       R K+ A D++ +  LI +    YV+  LR K++++ Y
Sbjct: 103 RDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRY 162

Query: 159 DFDNVISAAAEGEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDR 215
           D + +IS+  + EK+ L DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ +
Sbjct: 163 DLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAK 222

[Close]

BLAST of ClCG05G014820 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 56/187 (29.95%), Postives = 91/187 (48.66%), Query Frame = 0


Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNA--SPEIASANEYWLNGPLPVPSVYNNIA 92
           ++ Q +VS  + S   R ++  LV+  L G +      A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NENTGTRSF---LKTGIYIANIGTEGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           + +   R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDNVISAAAEGEKQPLVDLANRLFDNFEKLEDAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA  + EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

The following BLAST results are available for this feature:

BLAST of ClCG05G014820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899633.1	1.5e-107	94.42	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Benincasa hispi...	[more]
XP_004151964.1	2.5e-107	95.35	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus...	[more]
XP_008454569.1	7.3e-107	94.88	PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucu...	[more]
XP_022139520.1	7.0e-102	90.37	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica chara...	[more]
KAG7015220.1	2.3e-100	88.99	Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyr...	[more]

BLAST of ClCG05G014820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH4	2.2e-66	58.64	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
Q9XFT3	8.9e-15	30.94	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41932	1.6e-11	29.95	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	2.3e-10	27.15	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]
Q0D5P8	2.3e-10	27.15	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of ClCG05G014820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7N1	1.2e-107	95.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1	[more]
A0A5A7TX10	3.5e-107	94.88	Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BZP3	3.5e-107	94.88	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo ...	[more]
A0A6J1CCI9	3.4e-102	90.37	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica cha...	[more]
A0A6J1FHS2	1.9e-100	88.53	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita mos...	[more]

BLAST of ClCG05G014820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01440.1	1.6e-67	58.64	PsbQ-like 1	[more]
AT4G21280.1	6.3e-16	30.56	photosystem II subunit QA	[more]
AT4G21280.2	6.3e-16	30.94	photosystem II subunit QA	[more]
AT4G05180.1	1.1e-12	29.95	photosystem II subunit Q-2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 76..215 e-value: 3.8E-45 score: 155.5
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 105..215
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 23..215 e-value: 1.1E-55 score: 188.6
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..215
None	No IPR available	PANTHER	PTHR33399:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G014820.1	ClCG05G014820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity