ClCG05G014660 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G014660
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
LocationCG_Chr05: 25014051 .. 25014550 (+)
RNA-Seq ExpressionClCG05G014660
SyntenyClCG05G014660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAACGCCATGTCTACCGGAAGCACCAATGGTCCTGAATCTACGAAATTTAACAATCCACCACTGAATCAACTTCTTTATCAAATTACAAATACAAAGCTCGAGCAAGGAAATTATCTACTATGGAAGACGTTTGCCCTACCCATACTTCAAAGCTACAAACTCGAAGGTCATCTCTCTGATAAGAACCCCTGCCCTCCAATGTTTCTTCCCATCCTTGGTGATAGCTCGACACTAGTAGCAACCAATGCTGAAGGAGCTTCAAGTTCCCAAATGATTTCTAAAGTTGTTGTTAGTACCTCTATTGAAATAAGCTTAAATCCACATTTGAGGCATGGATTTTTGAAGATTAGCTTCTCTTAGGCTGGTTGTACAACTCAATGATGCTAGAAGTGGCTATACAACTCATGGGTTTTAATAATATGAAAGAACTTTGGGAAGCTATTCAGGAACTTTTTGGCATTCAATTGAGGGCTGAGGAAGATTATCTACGATAG

mRNA sequence

ATGACCAACGCCATGTCTACCGGAAGCACCAATGGTCCTGAATCTACGAAATTTAACAATCCACCACTGAATCAACTTCTTTATCAAATTACAAATACAAAGCTCGAGCAAGGAAATTATCTACTATGGAAGACGTTTGCCCTACCCATACTTCAAAGCTACAAACTCGAAGGTCATCTCTCTGATAAGAACCCCTGCCCTCCAATGTTTCTTCCCATCCTTGGTGATAGCTCGACACTAGTAGCAACCAATGCTGAAGGAGCTTCAAGTTCCCAAATGATTTCTAAAGTTGTTGTTAGCTGGTTGTACAACTCAATGATGCTAGAAGTGGCTATACAACTCATGGGTTTTAATAATATGAAAGAACTTTGGGAAGCTATTCAGGAACTTTTTGGCATTCAATTGAGGGCTGAGGAAGATTATCTACGATAG

Coding sequence (CDS)

ATGACCAACGCCATGTCTACCGGAAGCACCAATGGTCCTGAATCTACGAAATTTAACAATCCACCACTGAATCAACTTCTTTATCAAATTACAAATACAAAGCTCGAGCAAGGAAATTATCTACTATGGAAGACGTTTGCCCTACCCATACTTCAAAGCTACAAACTCGAAGGTCATCTCTCTGATAAGAACCCCTGCCCTCCAATGTTTCTTCCCATCCTTGGTGATAGCTCGACACTAGTAGCAACCAATGCTGAAGGAGCTTCAAGTTCCCAAATGATTTCTAAAGTTGTTGTTAGCTGGTTGTACAACTCAATGATGCTAGAAGTGGCTATACAACTCATGGGTTTTAATAATATGAAAGAACTTTGGGAAGCTATTCAGGAACTTTTTGGCATTCAATTGAGGGCTGAGGAAGATTATCTACGATAG

Protein sequence

MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHLSDKNPCPPMFLPILGDSSTLVATNAEGASSSQMISKVVVSWLYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR
Homology
[Close]
BLAST of ClCG05G014660 vs. NCBI nr
Match: XP_031745012.1 (uncharacterized protein LOC116405217 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-35
Identity = 80/147 (54.42%), Postives = 106/147 (72.11%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           MTN +   S  G  +T F+NPPLNQ+L Q+ + KL++GNYLLW+T ALPIL+SYKL+GHL
Sbjct: 1   MTNGV---SLIGSSTTNFSNPPLNQILNQLASVKLDRGNYLLWQTLALPILKSYKLQGHL 60

Query: 61  SDKNPCPPMFL--PILGDSSTLVATNAEGASSSQMIS--KVVVSWLYNSMMLEVAIQLMG 120
           +++N CPP F+  P  G SS    T        Q ++   +++ W+YNSM  EVA+QLMG
Sbjct: 61  TEENQCPPKFIINPTCGASSRSTTTKTVNPKFDQWVTFDLLLLGWMYNSMTPEVALQLMG 120

Query: 121 FNNMKELWEAIQELFGIQLRAEEDYLR 144
           FN  K+LWEAIQ+LFG+QLRAEED+LR
Sbjct: 121 FNTAKDLWEAIQDLFGVQLRAEEDFLR 144

[Close]
BLAST of ClCG05G014660 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 81/159 (50.94%), Postives = 105/159 (66.04%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA++TGS+ G ESTKF+ PPLNQLL QITNTKLE+G ++LWKT ALPIL+ YKLE HL
Sbjct: 1   MANAIATGSSIG-ESTKFSTPPLNQLLNQITNTKLERGYFMLWKTLALPILRGYKLERHL 60

Query: 61  SDKNPCPPMF----LPIL--GDSSTLVATNAEGASSSQMIS----------KVVVSWLYN 120
           S    C PMF    +P +  GD  +  +  A  A+  +  +          ++++ W YN
Sbjct: 61  SGTKICSPMFTVSTIPSIETGDFGSQASGGASSATGERTFNPLYEVWVTADQLLLGWPYN 120

Query: 121 SMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           SM  EVA+QLMG  + K LW+AI  LFG+Q RAE+DYLR
Sbjct: 121 SMTPEVAVQLMGHESAKSLWDAIHSLFGVQSRAEKDYLR 158

[Close]
BLAST of ClCG05G014660 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-30
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+T  KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TAETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]
BLAST of ClCG05G014660 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-30
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+T  KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TAETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]
BLAST of ClCG05G014660 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-30
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+T  KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TAETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]
BLAST of ClCG05G014660 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+T  KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TAETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]
BLAST of ClCG05G014660 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+T  KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TAETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]
BLAST of ClCG05G014660 vs. ExPASy TrEMBL
Match: A0A1S4E1V2 (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+T  KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TAETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]
BLAST of ClCG05G014660 vs. ExPASy TrEMBL
Match: A0A1S4E2K3 (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+T  KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TAETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]
BLAST of ClCG05G014660 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.0e-30
Identity = 77/162 (47.53%), Postives = 101/162 (62.35%), Query Frame = 0 

Query: 1   MTNAMSTGSTNGPESTKFNNPPLNQLLYQITNTKLEQGNYLLWKTFALPILQSYKLEGHL 60
           M NA  T +     S  F+NPPLNQ+L Q+   KL++ NYLLWKT ALPIL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHL 60

Query: 61  SDKNPCPPMFLPILGDSSTLVATNAEGA-----SSSQMISKVV--------------VSW 120
           + + PCP  F  +L  SS+      EGA     +SS +  ++V              + W
Sbjct: 61  TGETPCPSHF--VLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGW 120

Query: 121 LYNSMMLEVAIQLMGFNNMKELWEAIQELFGIQLRAEEDYLR 144
           LYNSM  +VAIQLMGF N+++LW+A Q+ FG+Q RAEED+LR
Sbjct: 121 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

The following BLAST results are available for this feature:
BLAST of ClCG05G014660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031745012.14.9e-3554.42uncharacterized protein LOC116405217 [Cucumis sativus][more]
XP_038887015.11.3e-3050.94uncharacterized protein LOC120077182 [Benincasa hispida][more]
XP_016902203.12.1e-3048.15PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902205.12.1e-3048.15PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo][more]
XP_016902197.12.1e-3048.15PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
BLAST of ClCG05G014660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG05G014660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E1U91.0e-3048.15uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1U61.0e-3048.15uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1V21.0e-3048.15uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E2K31.0e-3048.15uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7SIT73.0e-3047.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of ClCG05G014660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G014660.1ClCG05G014660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process